[Dplr-commits] r974 - in pkg/dplR: . man

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Fri Mar 13 11:23:38 CET 2015 

Author: mvkorpel
Date: 2015-03-13 11:23:37 +0100 (Fri, 13 Mar 2015)
New Revision: 974

Modified:
   pkg/dplR/DESCRIPTION
   pkg/dplR/man/latexify.Rd
   pkg/dplR/man/read.fh.Rd
   pkg/dplR/man/read.tridas.Rd
   pkg/dplR/man/skel.plot.Rd
   pkg/dplR/man/tridas.vocabulary.Rd
   pkg/dplR/man/uuid.gen.Rd
   pkg/dplR/man/write.tridas.Rd
Log:
* In .Rd files of TRiDaS functions: Added a reference to article
  by Jansma et al. (2010)

* Small formatting change to reference in uuid.gen.Rd

* Removed URL prefix from URLs in references, because \url{foo}
  is formatted as <URL: foo> when an .Rd file is formatted as
  text.  URL <URL: foo> does not look nice.


Modified: pkg/dplR/DESCRIPTION
===================================================================
--- pkg/dplR/DESCRIPTION	2015-03-12 08:50:48 UTC (rev 973)
+++ pkg/dplR/DESCRIPTION	2015-03-13 10:23:37 UTC (rev 974)
@@ -3,7 +3,7 @@
 Type: Package
 Title: Dendrochronology Program Library in R
 Version: 1.6.3
-Date: 2015-03-12
+Date: 2015-03-13
 Authors at R: c(person("Andy", "Bunn", role = c("aut", "cph",
         "cre", "trl"), email = "andy.bunn at wwu.edu"), person("Mikko",
         "Korpela", role = c("aut", "trl")), person("Franco", "Biondi",

Modified: pkg/dplR/man/latexify.Rd
===================================================================
--- pkg/dplR/man/latexify.Rd	2015-03-12 08:50:48 UTC (rev 973)
+++ pkg/dplR/man/latexify.Rd	2015-03-13 10:23:37 UTC (rev 974)
@@ -104,7 +104,7 @@
 }
 \references{
   INRIA.  Tralics: a LaTeX to XML translator, HTML documentation of all
-  TeX commands.  \acronym{URL} \url{http://www-sop.inria.fr/marelle/tralics/}.
+  TeX commands.  \url{http://www-sop.inria.fr/marelle/tralics/}.
 
   Levitt, N., Persch, C., and Unicode, Inc. (2013) GNOME Character Map,
   application version 3.10.1.
@@ -114,11 +114,10 @@
   second edition.  \acronym{ISBN-13}: 978-0-201-36299-2.
 
   Pakin, S. (2009) The Comprehensive LaTeX Symbol
-  List.  \acronym{URL}
-  \url{http://www.ctan.org/tex-archive/info/symbols/comprehensive}.
+  List.  \url{http://www.ctan.org/tex-archive/info/symbols/comprehensive}.
 
   The Unicode Consortium.  The Unicode Standard.
-  \acronym{URL} \url{http://www.unicode.org/versions/latest/}.
+  \url{http://www.unicode.org/versions/latest/}.
 }
 \author{
   Mikko Korpela

Modified: pkg/dplR/man/read.fh.Rd
===================================================================
--- pkg/dplR/man/read.fh.Rd	2015-03-12 08:50:48 UTC (rev 973)
+++ pkg/dplR/man/read.fh.Rd	2015-03-13 10:23:37 UTC (rev 974)
@@ -35,6 +35,6 @@
 \seealso{ \code{\link{read.rwl}} }
 
 \references{ Rinn, F. (2003) \emph{TSAP-Win User Reference Manual.}
-  Rinntech, Heidelberg.  \acronym{URL} \url{http://www.rinntech.com/}.
+  Rinntech, Heidelberg.  \url{http://www.rinntech.com/}.
 }
 \keyword{ IO }

Modified: pkg/dplR/man/read.tridas.Rd
===================================================================
--- pkg/dplR/man/read.tridas.Rd	2015-03-12 08:50:48 UTC (rev 973)
+++ pkg/dplR/man/read.tridas.Rd	2015-03-13 10:23:37 UTC (rev 974)
@@ -60,13 +60,21 @@
   
 }
 
-\details{ The parameters used for rearranging
-  (\code{\var{ids.from.titles}}, \code{\var{ids.from.identifiers}}) and
-  combining (\code{\var{combine.series}}) measurement series only affect
-  the four lowest levels of document structure: element, sample, radius,
+\details{
+
+  The Tree Ring Data Standard (TRiDaS) is described in Jansma et. al
+  (2010).  Information about the current version of the standard can be
+  found from \href{http://www.tridas.org/}{TRiDaS website}.
+
+  The parameters used for rearranging (\code{\var{ids.from.titles}},
+  \code{\var{ids.from.identifiers}}) and combining
+  (\code{\var{combine.series}}) measurement series only affect the four
+  lowest levels of document structure: element, sample, radius,
   measurementSeries.  Series are not reorganized or combined at the
-  upper structural levels (project, object). }
+  upper structural levels (project, object).
 
+}
+
 \value{
   A list with a variable number of components according to the contents
   of the input file.  The possible list components are:
@@ -541,9 +549,15 @@
   }
 }
 
-\references{ TRiDaS \enc{–}{--} The Tree Ring Data Standard.
-  \acronym{URL} \url{http://www.tridas.org/}. }
+\references{
+  Jansma, E., Brewer, P. W., and Zandhuis, I. (2010) TRiDaS 1.1: The
+  tree-ring data standard.  \emph{Dendrochronologia}, \bold{28}(2),
+  99--130.
 
+  TRiDaS \enc{–}{--} The Tree Ring Data Standard.
+  \url{http://www.tridas.org/}.
+}
+
 \author{ Mikko Korpela }
 
 \note{ This is an early version of the function.  Bugs are likely to

Modified: pkg/dplR/man/skel.plot.Rd
===================================================================
--- pkg/dplR/man/skel.plot.Rd	2015-03-12 08:50:48 UTC (rev 973)
+++ pkg/dplR/man/skel.plot.Rd	2015-03-13 10:23:37 UTC (rev 974)
@@ -66,11 +66,10 @@
   \acronym{ISBN-13}: 978-0-8165-1680-3.
   
   Sheppard, P. R. (2002) Crossdating Tree Rings Using Skeleton Plotting.
-  \acronym{URL}
   \url{http://www.ltrr.arizona.edu/skeletonplot/introcrossdate.htm}.
   
   Meko, D. (2002) Tree-Ring MATLAB Toolbox.
-  \acronym{URL} \url{http://www.mathworks.com/matlabcentral/}.
+  \url{http://www.mathworks.com/matlabcentral/}.
   
 }
 \author{ Andy Bunn.  Patched and improved by Mikko Korpela. }

Modified: pkg/dplR/man/tridas.vocabulary.Rd
===================================================================
--- pkg/dplR/man/tridas.vocabulary.Rd	2015-03-12 08:50:48 UTC (rev 973)
+++ pkg/dplR/man/tridas.vocabulary.Rd	2015-03-13 10:23:37 UTC (rev 974)
@@ -30,6 +30,10 @@
     \code{FALSE}.}
 }
 \details{
+  The Tree Ring Data Standard (TRiDaS) is described in Jansma et. al
+  (2010).  Information about the current version of the standard can be
+  found from \href{http://www.tridas.org/}{TRiDaS website}.
+
   The function has four usage modes:
   \enumerate{
 
@@ -65,8 +69,12 @@
 
 }
 \references{
+  Jansma, E., Brewer, P. W., and Zandhuis, I. (2010) TRiDaS 1.1: The
+  tree-ring data standard.  \emph{Dendrochronologia}, \bold{28}(2),
+  99--130.
+
   TRiDaS \enc{–}{--} The Tree Ring Data Standard.
-  \acronym{URL} \url{http://www.tridas.org/}.
+  \url{http://www.tridas.org/}.
 }
 \author{
   Mikko Korpela

Modified: pkg/dplR/man/uuid.gen.Rd
===================================================================
--- pkg/dplR/man/uuid.gen.Rd	2015-03-12 08:50:48 UTC (rev 973)
+++ pkg/dplR/man/uuid.gen.Rd	2015-03-13 10:23:37 UTC (rev 974)
@@ -71,9 +71,8 @@
 }
 \references{
   Leach, P., Mealling, M., and Salz, R. (2005) A Universally Unique
-  IDentifier (\acronym{UUID}) \acronym{URN} namespace, \acronym{RFC}
-  4122, RFC Editor.
-  \acronym{URL} \url{http://www.rfc-editor.org/rfc/rfc4122.txt}.
+  IDentifier (\acronym{UUID}) \acronym{URN} namespace.  \acronym{RFC}
+  4122, RFC Editor.  \url{http://www.rfc-editor.org/rfc/rfc4122.txt}.
 }
 \author{
   Mikko Korpela

Modified: pkg/dplR/man/write.tridas.Rd
===================================================================
--- pkg/dplR/man/write.tridas.Rd	2015-03-12 08:50:48 UTC (rev 973)
+++ pkg/dplR/man/write.tridas.Rd	2015-03-13 10:23:37 UTC (rev 974)
@@ -342,11 +342,23 @@
 
 }
 
+\details{
+  The Tree Ring Data Standard (TRiDaS) is described in Jansma et. al
+  (2010).  Information about the current version of the standard can be
+  found from \href{http://www.tridas.org/}{TRiDaS website}.
+}
+
 \value{ \code{\var{fname}} }
 
-\references{ TRiDaS \enc{–}{--} The Tree Ring Data Standard.
-  \acronym{URL} \url{http://www.tridas.org/}. }
+\references{
+  Jansma, E., Brewer, P. W., and Zandhuis, I. (2010) TRiDaS 1.1: The
+  tree-ring data standard.  \emph{Dendrochronologia}, \bold{28}(2),
+  99--130.
 
+  TRiDaS \enc{–}{--} The Tree Ring Data Standard.
+  \url{http://www.tridas.org/}.
+}
+
 \author{ Mikko Korpela }
 
 \note{ This is an early version of the function.  Bugs are likely to

More information about the Dplr-commits mailing list