[Dplr-commits] r802 - in pkg/dplR: . R

[noreply at r-forge.r-project.org]

Author: andybunn
Date: 2014-04-10 01:24:28 +0200 (Thu, 10 Apr 2014)
New Revision: 802

Modified:
   pkg/dplR/ChangeLog
   pkg/dplR/R/detrend.series.R
   pkg/dplR/TODO
Log:
cosmetic changes. cleaned up todo list.

Modified: pkg/dplR/ChangeLog
===================================================================
--- pkg/dplR/ChangeLog	2014-04-09 19:24:31 UTC (rev 801)
+++ pkg/dplR/ChangeLog	2014-04-09 23:24:28 UTC (rev 802)
@@ -13,7 +13,7 @@
 
 File: detrend.R and detrend.series.R
 ------------
-- Added an Ar detrend method.
+- Added an Ar detrend method. Revised plotting in detrend.series
 
 File: powt.R
 ------------
@@ -24,8 +24,8 @@
 
 File: rwl.stats
 -------------------------
-- Added an S3 summary method for rwl objects so that summary(an rwl object)
-  calls rwl.stats()
+- Added an S3 summary method for rwl objects so that summary(foo.rwl)
+  calls rwl.stats(foo.rwl)
 
 Folder: vignettes
 -------------------------

Modified: pkg/dplR/R/detrend.series.R
===================================================================
--- pkg/dplR/R/detrend.series.R	2014-04-09 19:24:31 UTC (rev 801)
+++ pkg/dplR/R/detrend.series.R	2014-04-09 23:24:28 UTC (rev 802)
@@ -213,7 +213,7 @@
                xlab=gettext("Age (Yrs)", domain="R-dplR"),
                ylab=gettext("RWI", domain="R-dplR"))
           abline(h=1)
-          mtext(text="Not plotted with raw series",side=3,line=-1)
+          mtext(text="Ar residuals are not plotted with raw series",side=3,line=-1)
         }
     }
 

Modified: pkg/dplR/TODO
===================================================================
--- pkg/dplR/TODO	2014-04-09 19:24:31 UTC (rev 801)
+++ pkg/dplR/TODO	2014-04-09 23:24:28 UTC (rev 802)
@@ -6,27 +6,6 @@
 *  In detrend(method=“ModNegExp”) there should be a verbose option that writes 
    how each series was handled including the parameters of the model.
 
-* Should there be a makefile for vignettes that removes 
-  the temp files that get produced when typesetting the vignette pdf? 
-  (the tex files and intermediate pdfs, etc.) I've been compiling the 
-  vignettes in Rstudio which leaves a lot of junk
-  behind when it's done. I made this makefile for my use. I'm not sure if 
-  this should sit in the pkg directory or just be for my use. Thoughts?
-      output = .output
-      rnwfile = intro-dplR
-      
-      all:
-        R CMD Sweave $(rnwfile).Rnw
-      	-mkdir $(output)
-      	-cp *.sty $(output)
-      	-cp *.bib $(output)
-      	-mv *.tex *.pdf *.pdf $(output)
-      	cd $(output); R CMD texi2pdf $(rnwfile).tex 
-      
-      clean:
-      	-rm $(output)/*
-      	-rmdir $(output)
-
 * Decide when to use class('rwl') in functions dealing with rwl objects.
   Other than the plot and summary S3Method for rwl, are there cases when 
   having that class would be useful. E.g., in error checking?
@@ -34,9 +13,5 @@
 - Consider the benefits and drawbacks of creating classes for chonologies. 
   One benefit would be an S3 plot method for chronologies.
 
-* Continue work on "Ar" as a detrending method.
-  It would be nice to have a prewhitening option to detrend.series
-  (and therefore dentrend) that returns white noise. This has been started but
-  needs more work. The help files have not been worked on beyond adding Ar as
-  a method.
+- Consider the benefits and drawbacks of creating classes for rwi.