[Dplr-commits] r685 - in branches/redfit: . man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Wed Sep 4 15:41:35 CEST 2013
Author: mvkorpel
Date: 2013-09-04 15:41:34 +0200 (Wed, 04 Sep 2013)
New Revision: 685
Modified:
branches/redfit/DESCRIPTION
branches/redfit/man/bai.in.Rd
branches/redfit/man/bai.out.Rd
branches/redfit/man/cms.Rd
branches/redfit/man/detrend.Rd
branches/redfit/man/detrend.series.Rd
branches/redfit/man/ffcsaps.Rd
branches/redfit/man/fill.internal.NA.Rd
branches/redfit/man/hanning.Rd
branches/redfit/man/redfit.Rd
branches/redfit/man/rwi.stats.running.Rd
branches/redfit/man/sea.Rd
branches/redfit/man/series.rwl.plot.Rd
branches/redfit/man/skel.plot.Rd
Log:
Load necessary packages in Examples. The packages ("graphics",
"grDevices", "stats", "utils") should already be loaded, but that
might not always be the case.
Modified: branches/redfit/DESCRIPTION
===================================================================
--- branches/redfit/DESCRIPTION 2013-09-04 12:08:26 UTC (rev 684)
+++ branches/redfit/DESCRIPTION 2013-09-04 13:41:34 UTC (rev 685)
@@ -3,7 +3,7 @@
Type: Package
Title: Dendrochronology Program Library in R
Version: 1.5.7
-Date: 2013-08-19
+Date: 2013-09-04
Authors at R: c(person(c("Andrew", "G."), "Bunn", role = c("aut", "cph",
"cre", "trl"), email = "andrew.bunn at wwu.edu"), person("Mikko",
"Korpela", role = "aut"), person("Franco", "Biondi",
Modified: branches/redfit/man/bai.in.Rd
===================================================================
--- branches/redfit/man/bai.in.Rd 2013-09-04 12:08:26 UTC (rev 684)
+++ branches/redfit/man/bai.in.Rd 2013-09-04 13:41:34 UTC (rev 685)
@@ -27,6 +27,7 @@
Nevada Reno, \acronym{USA}. Patched and improved by Mikko Korpela. }
\seealso{ \code{\link{bai.out}} }
\examples{
+library(graphics)
## Toy
n <- 100
## Make three fake tree-ring series to show that these funcs work on rwl objects
Modified: branches/redfit/man/bai.out.Rd
===================================================================
--- branches/redfit/man/bai.out.Rd 2013-09-04 12:08:26 UTC (rev 684)
+++ branches/redfit/man/bai.out.Rd 2013-09-04 13:41:34 UTC (rev 685)
@@ -29,6 +29,7 @@
\seealso{ \code{\link{bai.in}} }
\examples{
\dontrun{
+library(graphics)
## Toy
n <- 100
## Make three fake tree-ring series to show that these funcs work on rwl objects
Modified: branches/redfit/man/cms.Rd
===================================================================
--- branches/redfit/man/cms.Rd 2013-09-04 12:08:26 UTC (rev 684)
+++ branches/redfit/man/cms.Rd 2013-09-04 13:41:34 UTC (rev 685)
@@ -37,7 +37,8 @@
dplR by Andy Bunn. Patched and improved by Mikko Korpela.
}
\seealso{ \code{\link{detrend}}, \code{\link{chron}}, \code{\link{rcs}} }
-\examples{data(gp.rwl)
+\examples{library(graphics)
+data(gp.rwl)
data(gp.po)
gp.rwi <- cms(rwl = gp.rwl, po = gp.po)
gp.crn <- chron(gp.rwi)
Modified: branches/redfit/man/detrend.Rd
===================================================================
--- branches/redfit/man/detrend.Rd 2013-09-04 12:08:26 UTC (rev 684)
+++ branches/redfit/man/detrend.Rd 2013-09-04 13:41:34 UTC (rev 685)
@@ -65,6 +65,7 @@
ca533.rwi <- detrend(rwl = ca533, method = "ModNegExp")
\dontrun{
+library(grDevices)
## Detrend using all methods. Returns a list
ca533.rwi <- detrend(rwl = ca533)
## Save a pdf of all series
Modified: branches/redfit/man/detrend.series.Rd
===================================================================
--- branches/redfit/man/detrend.series.Rd 2013-09-04 12:08:26 UTC (rev 684)
+++ branches/redfit/man/detrend.series.Rd 2013-09-04 13:41:34 UTC (rev 685)
@@ -88,7 +88,7 @@
}
\author{ Andy Bunn. Patched and improved by Mikko Korpela. }
\seealso{ \code{\link{detrend}} }
-\examples{
+\examples{library(stats)
## Using a plausible representation of a tree-ring series
gt <- 0.5 * exp (-0.05 * 1:200) + 0.2
noise <- c(arima.sim(model = list(ar = 0.7), n = 200, mean = 1, sd = 0.5))
Modified: branches/redfit/man/ffcsaps.Rd
===================================================================
--- branches/redfit/man/ffcsaps.Rd 2013-09-04 12:08:26 UTC (rev 684)
+++ branches/redfit/man/ffcsaps.Rd 2013-09-04 13:41:34 UTC (rev 685)
@@ -49,6 +49,7 @@
\examples{
\dontrun{
+library(graphics)
## Use series CAM011 from the Campito dataset
data(ca533)
series <- ca533[, "CAM011"]
Modified: branches/redfit/man/fill.internal.NA.Rd
===================================================================
--- branches/redfit/man/fill.internal.NA.Rd 2013-09-04 12:08:26 UTC (rev 684)
+++ branches/redfit/man/fill.internal.NA.Rd 2013-09-04 13:41:34 UTC (rev 685)
@@ -52,6 +52,7 @@
\seealso{ \code{\link{spline}}, \code{\link{approx}}
}
\examples{
+library(graphics)
foo <- data.frame(x1=c(rnorm(5), NA, NA, rnorm(3)),
x2=c(rnorm(10)),
x3=c(NA, NA, rnorm(3), NA, rnorm(4)),
Modified: branches/redfit/man/hanning.Rd
===================================================================
--- branches/redfit/man/hanning.Rd 2013-09-04 12:08:26 UTC (rev 684)
+++ branches/redfit/man/hanning.Rd 2013-09-04 13:41:34 UTC (rev 685)
@@ -26,7 +26,8 @@
\author{ Andy Bunn. Patched and improved by Mikko Korpela. }
\seealso{ \code{\link[stats]{filter} } }
-\examples{data(ca533)
+\examples{library(graphics)
+data(ca533)
yrs <- as.numeric(rownames(ca533))
y <- ca533[, 1]
not.na <- !is.na(y)
Modified: branches/redfit/man/redfit.Rd
===================================================================
--- branches/redfit/man/redfit.Rd 2013-09-04 12:08:26 UTC (rev 684)
+++ branches/redfit/man/redfit.Rd 2013-09-04 13:41:34 UTC (rev 685)
@@ -227,6 +227,8 @@
\examples{
# Create a simulated tree-ring width series that has a red-noise
# background and an embedded signal.
+library(graphics)
+library(stats)
set.seed(123)
nyrs <- 500
yrs <- 1:nyrs
Modified: branches/redfit/man/rwi.stats.running.Rd
===================================================================
--- branches/redfit/man/rwi.stats.running.Rd 2013-09-04 12:08:26 UTC (rev 684)
+++ branches/redfit/man/rwi.stats.running.Rd 2013-09-04 13:41:34 UTC (rev 685)
@@ -203,6 +203,7 @@
rwi.stats(ca533.rwi, ca533.ids) # i.e. running.window = FALSE
rwi.stats.legacy(ca533.rwi, ca533.ids) # rwi.stats prior to dplR 1.5.3
\dontrun{
+library(graphics)
## Plot the chronology showing a potential cutoff year based on eps
ca533.rwi <- detrend(rwl = ca533, method = "Spline") # detrend again
ca533.crn <- chron(ca533.rwi)
Modified: branches/redfit/man/sea.Rd
===================================================================
--- branches/redfit/man/sea.Rd 2013-09-04 12:08:26 UTC (rev 684)
+++ branches/redfit/man/sea.Rd 2013-09-04 13:41:34 UTC (rev 685)
@@ -58,7 +58,8 @@
}
-\examples{data(cana157)
+\examples{library(graphics)
+data(cana157)
event.years <- c(1631, 1742, 1845)
cana157.sea <- sea(cana157, event.years)
foo <- cana157.sea$se.unscaled
Modified: branches/redfit/man/series.rwl.plot.Rd
===================================================================
--- branches/redfit/man/series.rwl.plot.Rd 2013-09-04 12:08:26 UTC (rev 684)
+++ branches/redfit/man/series.rwl.plot.Rd 2013-09-04 13:41:34 UTC (rev 685)
@@ -65,7 +65,8 @@
\code{\link{corr.rwl.seg}}, \code{\link{corr.series.seg}},
\code{\link{ccf.series.rwl}}
}
-\examples{data(co021)
+\examples{library(utils)
+data(co021)
dat <- co021
flagged <- dat$"646244"
names(flagged) <- rownames(dat)
Modified: branches/redfit/man/skel.plot.Rd
===================================================================
--- branches/redfit/man/skel.plot.Rd 2013-09-04 12:08:26 UTC (rev 684)
+++ branches/redfit/man/skel.plot.Rd 2013-09-04 13:41:34 UTC (rev 685)
@@ -74,7 +74,8 @@
\author{ Andy Bunn. Patched and improved by Mikko Korpela. }
\seealso{ \code{\link{Devices}}, \code{\link{hanning}} }
-\examples{data(co021)
+\examples{library(grDevices)
+data(co021)
x <- co021[,33]
x.yrs <- as.numeric(rownames(co021))
x.name <- colnames(co021)[33]
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