[Distr-commits] r1461 - in branches/distr-2.9/pkg/distrEllipse: inst man tests/Examples
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu Aug 29 18:32:08 CEST 2024
Author: ruckdeschel
Date: 2024-08-29 18:32:08 +0200 (Thu, 29 Aug 2024)
New Revision: 1461
Modified:
branches/distr-2.9/pkg/distrEllipse/inst/NEWS
branches/distr-2.9/pkg/distrEllipse/man/0distrEllipse-package.Rd
branches/distr-2.9/pkg/distrEllipse/man/distrEllipseMASK.Rd
branches/distr-2.9/pkg/distrEllipse/tests/Examples/distrEllipse-Ex.Rout.save
Log:
[distrEllipse] ported changes from trunk to devel branch distr-2.9
Modified: branches/distr-2.9/pkg/distrEllipse/inst/NEWS
===================================================================
--- branches/distr-2.9/pkg/distrEllipse/inst/NEWS 2024-08-29 16:29:14 UTC (rev 1460)
+++ branches/distr-2.9/pkg/distrEllipse/inst/NEWS 2024-08-29 16:32:08 UTC (rev 1461)
@@ -18,6 +18,16 @@
##############
+v 2.8.3
+##############
+
+under the hood:
+with the help of K. Hornik identified spurious, platform dependent LF/CR issue
+and capsulated calls to infoShow() in Rd files by
+## IGNORE_RDIFF_BEGIN
+## IGNORE_RDIFF_END
+
+##############
v 2.8
##############
Modified: branches/distr-2.9/pkg/distrEllipse/man/0distrEllipse-package.Rd
===================================================================
--- branches/distr-2.9/pkg/distrEllipse/man/0distrEllipse-package.Rd 2024-08-29 16:29:14 UTC (rev 1460)
+++ branches/distr-2.9/pkg/distrEllipse/man/0distrEllipse-package.Rd 2024-08-29 16:32:08 UTC (rev 1461)
@@ -13,7 +13,7 @@
\tabular{ll}{
Package: \tab distrEllipse \cr
Version: \tab 2.9.0 \cr
-Date: \tab 2019-03-13 \cr
+Date: \tab 2024-08-29 \cr
Depends: \tab R(>= 3.4), methods, graphics, mvtnorm, setRNG(>= 2006.2-1),
distr(>= 2.8.0),distrEx(>= 2.8.0), distrSim(>= 2.2) \cr
Suggests: \tab distrMod(>= 2.8.0), distrTEst(>= 2.2) \cr
@@ -21,7 +21,7 @@
ByteCompile: \tab yes \cr
License: \tab LGPL-3 \cr
URL: \tab https://r-forge.r-project.org/projects/distr/\cr
-VCS/SVNRevision: \tab 1324 \cr
+VCS/SVNRevision: \tab 1454 \cr
}
}
\section{Classes}{
Modified: branches/distr-2.9/pkg/distrEllipse/man/distrEllipseMASK.Rd
===================================================================
--- branches/distr-2.9/pkg/distrEllipse/man/distrEllipseMASK.Rd 2024-08-29 16:29:14 UTC (rev 1460)
+++ branches/distr-2.9/pkg/distrEllipse/man/distrEllipseMASK.Rd 2024-08-29 16:32:08 UTC (rev 1461)
@@ -18,7 +18,9 @@
\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
\examples{
+## IGNORE_RDIFF_BEGIN
distrEllipseMASK()
+## IGNORE_RDIFF_END
}
\keyword{programming}
\keyword{distribution}
Modified: branches/distr-2.9/pkg/distrEllipse/tests/Examples/distrEllipse-Ex.Rout.save
===================================================================
--- branches/distr-2.9/pkg/distrEllipse/tests/Examples/distrEllipse-Ex.Rout.save 2024-08-29 16:29:14 UTC (rev 1460)
+++ branches/distr-2.9/pkg/distrEllipse/tests/Examples/distrEllipse-Ex.Rout.save 2024-08-29 16:32:08 UTC (rev 1461)
@@ -1,7 +1,7 @@
-R version 3.5.1 RC (2018-06-24 r74935) -- "Feather Spray"
-Copyright (C) 2018 The R Foundation for Statistical Computing
-Platform: i386-w64-mingw32/i386 (32-bit)
+R Under development (unstable) (2024-08-17 r87027 ucrt) -- "Unsuffered Consequences"
+Copyright (C) 2024 The R Foundation for Statistical Computing
+Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
@@ -21,24 +21,12 @@
> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> options(pager = "console")
-> base::assign(".ExTimings", "distrEllipse-Ex.timings", pos = 'CheckExEnv')
-> base::cat("name\tuser\tsystem\telapsed\n", file=base::get(".ExTimings", pos = 'CheckExEnv'))
-> base::assign(".format_ptime",
-+ function(x) {
-+ if(!is.na(x[4L])) x[1L] <- x[1L] + x[4L]
-+ if(!is.na(x[5L])) x[2L] <- x[2L] + x[5L]
-+ options(OutDec = '.')
-+ format(x[1L:3L], digits = 7L)
-+ },
-+ pos = 'CheckExEnv')
->
-> ### * </HEADER>
> library('distrEllipse')
Loading required package: mvtnorm
Loading required package: setRNG
Loading required package: distr
Loading required package: startupmsg
-:startupmsg> Utilities for Start-Up Messages (version 0.9.5)
+:startupmsg> Utilities for Start-Up Messages (version 0.9.7)
:startupmsg>
:startupmsg> For more information see ?"startupmsg",
:startupmsg> NEWS("startupmsg")
@@ -45,7 +33,7 @@
Loading required package: sfsmisc
:distr> Object Oriented Implementation of Distributions (version
-:distr> 2.8.0)
+:distr> 2.9.4)
:distr>
:distr> Attention: Arithmetics on distribution objects are
:distr> understood as operations on corresponding random variables
@@ -71,7 +59,7 @@
df, qqplot, sd
Loading required package: distrEx
-:distrEx> Extensions of Package 'distr' (version 2.7.0)
+:distrEx> Extensions of Package 'distr' (version 2.9.2)
:distrEx>
:distrEx> Note: Packages "e1071", "moments", "fBasics" should be
:distrEx> attached /before/ package "distrEx". See
@@ -96,7 +84,7 @@
Loading required package: distrSim
:distrSim> Simulation Classes Based on Package 'distr' (version
-:distrSim> 2.7.0)
+:distrSim> 2.8.2)
:distrSim>
:distrSim> Some functions from package 'stats' are intentionally
:distrSim> masked ---see distrSimMASK().
@@ -121,7 +109,7 @@
rbind
:distrEllipse> S4 Classes for Elliptically Contoured
-:distrEllipse> Distributions (version 2.7.0)
+:distrEllipse> Distributions (version 2.8.1)
:distrEllipse>
:distrEllipse> Some functions from package 'stats' are
:distrEllipse> intentionally masked ---see
@@ -144,7 +132,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: EllipticalDistribution-class
> ### Title: Elliptical distribution class
> ### Aliases: EllipticalDistribution-class
@@ -177,8 +164,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("EllipticalDistribution-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("EllipticalDistribution")
> ### * EllipticalDistribution
@@ -185,7 +170,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: EllipticalDistribution
> ### Title: Generating function for EllipticalDistribution-class
> ### Aliases: EllipticalDistribution
@@ -206,8 +190,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("EllipticalDistribution", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("EllipticalParameter-class")
> ### * EllipticalParameter-class
@@ -214,7 +196,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: EllipticalParameter-class
> ### Title: Paramter of an Elliptical distributions
> ### Aliases: EllipticalParameter-class location
@@ -242,8 +223,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("EllipticalParameter-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("MVnormDistribution-class")
> ### * MVnormDistribution-class
@@ -250,7 +229,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MVNormDistribution-class
> ### Title: MVNorm distribution class
> ### Aliases: MVNormDistribution-class sigma,MVNormDistribution-method
@@ -272,8 +250,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("MVnormDistribution-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("MVnormDistribution")
> ### * MVnormDistribution
@@ -280,7 +256,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MVNormDistribution
> ### Title: Generating function for MVNormDistribution-class
> ### Aliases: MVNormDistribution MVNorm
@@ -301,8 +276,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("MVnormDistribution", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("MVnormParameter-class")
> ### * MVnormParameter-class
@@ -309,7 +282,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MVNormParameter-class
> ### Title: Paramter of a multivariate normal distribution
> ### Aliases: MVNormParameter-class mean mean,MVNormParameter-method sigma
@@ -334,8 +306,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("MVnormParameter-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("MVtDistribution-class")
> ### * MVtDistribution-class
@@ -342,7 +312,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MVtDistribution-class
> ### Title: MVt distribution class
> ### Aliases: MVtDistribution-class sigma,MVtDistribution-method
@@ -366,8 +335,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("MVtDistribution-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("MVtDistribution")
> ### * MVtDistribution
@@ -374,7 +341,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MVtDistribution
> ### Title: Generating function for MvtDistribution-class
> ### Aliases: MVtDistribution MVt
@@ -402,8 +368,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("MVtDistribution", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("MVtParameter-class")
> ### * MVtParameter-class
@@ -410,7 +374,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MVtParameter-class
> ### Title: Paramter of a multivariate t distribution
> ### Aliases: MVtParameter-class sigma,MVtParameter-method
@@ -441,8 +404,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("MVtParameter-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("MultivarDistrList-class")
> ### * MultivarDistrList-class
@@ -449,7 +410,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MultivarDistrList-class
> ### Title: List of multivariate distributions
> ### Aliases: MultivarDistrList-class MVDistrList-class
@@ -508,8 +468,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("MultivarDistrList-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("MultivarDistrList")
> ### * MultivarDistrList
@@ -516,7 +474,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MultivarDistrList
> ### Title: Generating function for MultivarDistrList-class
> ### Aliases: MultivarDistrList
@@ -573,8 +530,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("MultivarDistrList", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("MultivarMixingDistribution-class")
> ### * MultivarMixingDistribution-class
@@ -581,7 +536,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MultivarMixingDistribution-class
> ### Title: Class "MultivarMixingDistribution"
> ### Aliases: MultivarMixingDistribution-class mixCoeff mixDistr mixCoeff<-
@@ -621,7 +575,7 @@
Its absolutely continuous part (with weight 0.385000) is a
Distribution Object of Class: AbscontDistribution
This part is accessible with 'acPart(<obj>)'.
-Warning in new("standardGeneric", .Data = function (object) :
+Warning in (new("standardGeneric", .Data = function (object) :
arithmetics on distributions are understood as operations on r.v.'s
see 'distrARITH()'; for switching off this warning see '?distroptions'
> p(mylist)(0.3)
@@ -630,7 +584,7 @@
An object of class "UnivarDistrList"
[[1]] Distribution Object of Class: AbscontDistribution
[[2]] Distribution Object of Class: DiscreteDistribution
-Warning in new("standardGeneric", .Data = function (object) :
+Warning in (new("standardGeneric", .Data = function (object) :
arithmetics on distributions are understood as operations on r.v.'s
see 'distrARITH()'; for switching off this warning see '?distroptions'
> E(mylist)
@@ -768,13 +722,11 @@
Warning in log(x) : NaNs produced
Warning in log(x) : NaNs produced
[,1] [,2]
-[1,] 9.556681 -0.68320
+[1,] 9.556678 -0.68320
[2,] -0.683200 12.31188
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("MultivarMixingDistribution-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("MultivarMixingDistribution")
> ### * MultivarMixingDistribution
@@ -781,7 +733,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: MultivarMixingDistribution
> ### Title: Generating function for Class "MultivarMixingDistribution"
> ### Aliases: MultivarMixingDistribution
@@ -794,8 +745,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("MultivarMixingDistribution", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("SphericalDistribution-class")
> ### * SphericalDistribution-class
@@ -802,7 +751,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: SphericalDistribution-class
> ### Title: Spherical distribution class
> ### Aliases: SphericalDistribution-class scale,SphericalDistribution-method
@@ -839,8 +787,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("SphericalDistribution-class", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("SphericalDistribution")
> ### * SphericalDistribution
@@ -847,7 +793,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: SphericalDistribution
> ### Title: Generating function for SphericalDistribution-class
> ### Aliases: SphericalDistribution
@@ -868,8 +813,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("SphericalDistribution", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("distrEllipseMASK")
> ### * distrEllipseMASK
@@ -876,7 +819,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: distrEllipseMASK
> ### Title: Masking of/by other functions in package "distrEllipse"
> ### Aliases: distrEllipseMASK MASKING
@@ -884,6 +826,7 @@
>
> ### ** Examples
>
+> ## IGNORE_RDIFF_BEGIN
> distrEllipseMASK()
######################################################################
# On masking of and by other functions in package "distrEllipse"
@@ -893,11 +836,10 @@
*** intentional masking: ***
+> ## IGNORE_RDIFF_END
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("distrEllipseMASK", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("distrEllipseoptions")
> ### * distrEllipseoptions
@@ -904,7 +846,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: distrEllipseoptions
> ### Title: functions to change the global variables of the package
> ### 'distrEllipse'
@@ -936,8 +877,6 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("distrEllipseoptions", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("plot-methods")
> ### * plot-methods
@@ -944,7 +883,6 @@
>
> flush(stderr()); flush(stdout())
>
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot-methods
> ### Title: Methods for Function plot in Package 'distrEllipse'
> ### Aliases: plot plot-methods plot,SphericalDistribution,missing-method
@@ -962,14 +900,12 @@
>
>
>
-> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
-> base::cat("plot-methods", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed: 6.74 0.31 7.07 NA NA
+Time elapsed: 7.63 0.33 8.46 NA NA
> grDevices::dev.off()
null device
1
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