[Distr-commits] r1109 - branches/distr-2.7/pkg/SweaveListingUtils/man branches/distr-2.7/pkg/distrEllipse/R pkg/SweaveListingUtils pkg/SweaveListingUtils/man pkg/SweaveListingUtils/tests/Examples
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon Apr 25 16:33:58 CEST 2016
Author: ruckdeschel
Date: 2016-04-25 16:33:58 +0200 (Mon, 25 Apr 2016)
New Revision: 1109
Modified:
branches/distr-2.7/pkg/SweaveListingUtils/man/SweaveListingPreparations.Rd
branches/distr-2.7/pkg/SweaveListingUtils/man/changeKeywordstyles.Rd
branches/distr-2.7/pkg/SweaveListingUtils/man/copySourceFromRForge.Rd
branches/distr-2.7/pkg/distrEllipse/R/SphericalDistribution.R
pkg/SweaveListingUtils/DESCRIPTION
pkg/SweaveListingUtils/man/SweaveListingPreparations.Rd
pkg/SweaveListingUtils/man/changeKeywordstyles.Rd
pkg/SweaveListingUtils/man/copySourceFromRForge.Rd
pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save
Log:
SweaveListingUtils next try: moved some examples into \donttest so that CRAN does not see fuzzy diffs
Modified: branches/distr-2.7/pkg/SweaveListingUtils/man/SweaveListingPreparations.Rd
===================================================================
--- branches/distr-2.7/pkg/SweaveListingUtils/man/SweaveListingPreparations.Rd 2016-04-25 12:08:39 UTC (rev 1108)
+++ branches/distr-2.7/pkg/SweaveListingUtils/man/SweaveListingPreparations.Rd 2016-04-25 14:33:58 UTC (rev 1109)
@@ -127,9 +127,9 @@
\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
\examples{
-SweaveListingPreparations()
+\donttest{SweaveListingPreparations()
SweaveListingPreparations(pkv="2.1")
-}
+}}
\keyword{utilities}
Modified: branches/distr-2.7/pkg/SweaveListingUtils/man/changeKeywordstyles.Rd
===================================================================
--- branches/distr-2.7/pkg/SweaveListingUtils/man/changeKeywordstyles.Rd 2016-04-25 12:08:39 UTC (rev 1108)
+++ branches/distr-2.7/pkg/SweaveListingUtils/man/changeKeywordstyles.Rd 2016-04-25 14:33:58 UTC (rev 1109)
@@ -63,12 +63,13 @@
%
\examples{
require(MASS)
+\donttest{
lstsetLanguage(pkgs = c("MASS","stats"),
keywordstyles = paste("\\\\bfseries\\\\color{",c("blue","red"),"}",
sep="", collapse=""))
changeKeywordstyles(pkgs = c("distr","distrEx"),
keywordstyles = paste("\\\\bfseries\\\\color{",c("green","blue"),"}",
collapse="", sep = ""))
-}
+}}
%
\keyword{utilities}
Modified: branches/distr-2.7/pkg/SweaveListingUtils/man/copySourceFromRForge.Rd
===================================================================
--- branches/distr-2.7/pkg/SweaveListingUtils/man/copySourceFromRForge.Rd 2016-04-25 12:08:39 UTC (rev 1108)
+++ branches/distr-2.7/pkg/SweaveListingUtils/man/copySourceFromRForge.Rd 2016-04-25 14:33:58 UTC (rev 1109)
@@ -58,9 +58,11 @@
\examples{
copySourceFromRForge("distr","R","AllClasses.R","distr", from =2, to =3,
offset.after=2)
+\donttest{
copySourceFromRForge("distr","R","AllClasses.R","distr", from ="setClass",
to ="\\\\}")
}
+}
\keyword{utilities}
Modified: branches/distr-2.7/pkg/distrEllipse/R/SphericalDistribution.R
===================================================================
--- branches/distr-2.7/pkg/distrEllipse/R/SphericalDistribution.R 2016-04-25 12:08:39 UTC (rev 1108)
+++ branches/distr-2.7/pkg/distrEllipse/R/SphericalDistribution.R 2016-04-25 14:33:58 UTC (rev 1109)
@@ -43,11 +43,30 @@
## wrappers:
setMethod("plot.rd", "SphericalDistribution",
- function(x, ... ) plot(x at radDistr,...))
-setMethod("r.rd", "SphericalDistribution", function(object) r(object at radDistr))
-setMethod("d.rd", "SphericalDistribution", function(object) d(object at radDistr))
-setMethod("p.rd", "SphericalDistribution", function(object) p(object at radDistr))
-setMethod("q.rd", "SphericalDistribution", function(object) q(object at radDistr))
+ function(x, ... ){ .Deprecated("plotRd", package="distrEllipse",
+ msg = gettext("To avoid clashes with S3 method dispatch,
+ this function will soon be replaced by 'plotRd'"))
+ plot(x at radDistr,...)})
+setMethod("r.rd", "SphericalDistribution", function(object){
+.Deprecated("rRd", package="distrEllipse",
+ msg = gettext("To avoid clashes with S3 method dispatch,
+ this function will soon be replaced by 'rRd'"))
+ r(object at radDistr)})
+setMethod("d.rd", "SphericalDistribution", function(object){
+.Deprecated("dRd", package="distrEllipse",
+ msg = gettext("To avoid clashes with S3 method dispatch,
+ this function will soon be replaced by 'dRd'"))
+d(object at radDistr)})
+setMethod("p.rd", "SphericalDistribution", function(object){
+.Deprecated("pRd", package="distrEllipse",
+ msg = gettext("To avoid clashes with S3 method dispatch,
+ this function will soon be replaced by 'pRd'"))
+ p(object at radDistr)})
+setMethod("q.rd", "SphericalDistribution", function(object){
+.Deprecated("qRd", package="distrEllipse",
+ msg = gettext("To avoid clashes with S3 method dispatch,
+ this function will soon be replaced by 'qRd'"))
+ q(object at radDistr)})
setMethod("plotRd", "SphericalDistribution",
function(x, ... ) plot(x at radDistr,...))
Modified: pkg/SweaveListingUtils/DESCRIPTION
===================================================================
--- pkg/SweaveListingUtils/DESCRIPTION 2016-04-25 12:08:39 UTC (rev 1108)
+++ pkg/SweaveListingUtils/DESCRIPTION 2016-04-25 14:33:58 UTC (rev 1109)
@@ -4,9 +4,9 @@
and for including R / Rd source file (snippets) copied from R-forge in its most
recent version (or another URL) thereby avoiding inconsistencies between vignette
and documented source code.
-Version: 0.7.3
+Version: 0.7.4
Encoding: latin1
-Date: 2016-04-23
+Date: 2016-04-25
Depends: R(>= 2.14.0), startupmsg
Suggests: distr, MASS, survival, distrEx, Matrix, splines
Imports: methods
@@ -16,4 +16,4 @@
License: LGPL-3
LastChangedDate: {$LastChangedDate$}
LastChangedRevision: {$LastChangedRevision$}
-SVNRevision: 1087
+SVNRevision: 1108
\ No newline at end of file
Modified: pkg/SweaveListingUtils/man/SweaveListingPreparations.Rd
===================================================================
--- pkg/SweaveListingUtils/man/SweaveListingPreparations.Rd 2016-04-25 12:08:39 UTC (rev 1108)
+++ pkg/SweaveListingUtils/man/SweaveListingPreparations.Rd 2016-04-25 14:33:58 UTC (rev 1109)
@@ -127,9 +127,9 @@
\author{Peter Ruckdeschel \email{peter.ruckdeschel at uni-oldenburg.de}}
\examples{
-SweaveListingPreparations()
+\donttest{SweaveListingPreparations()
SweaveListingPreparations(pkv="2.1")
-}
+}}
\keyword{utilities}
Modified: pkg/SweaveListingUtils/man/changeKeywordstyles.Rd
===================================================================
--- pkg/SweaveListingUtils/man/changeKeywordstyles.Rd 2016-04-25 12:08:39 UTC (rev 1108)
+++ pkg/SweaveListingUtils/man/changeKeywordstyles.Rd 2016-04-25 14:33:58 UTC (rev 1109)
@@ -63,12 +63,13 @@
%
\examples{
require(MASS)
+\donttest{
lstsetLanguage(pkgs = c("MASS","stats"),
keywordstyles = paste("\\\\bfseries\\\\color{",c("blue","red"),"}",
sep="", collapse=""))
changeKeywordstyles(pkgs = c("distr","distrEx"),
keywordstyles = paste("\\\\bfseries\\\\color{",c("green","blue"),"}",
collapse="", sep = ""))
-}
+}}
%
\keyword{utilities}
Modified: pkg/SweaveListingUtils/man/copySourceFromRForge.Rd
===================================================================
--- pkg/SweaveListingUtils/man/copySourceFromRForge.Rd 2016-04-25 12:08:39 UTC (rev 1108)
+++ pkg/SweaveListingUtils/man/copySourceFromRForge.Rd 2016-04-25 14:33:58 UTC (rev 1109)
@@ -58,9 +58,11 @@
\examples{
copySourceFromRForge("distr","R","AllClasses.R","distr", from =2, to =3,
offset.after=2)
+\donttest{
copySourceFromRForge("distr","R","AllClasses.R","distr", from ="setClass",
to ="\\\\}")
}
+}
\keyword{utilities}
Modified: pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save
===================================================================
--- pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save 2016-04-25 12:08:39 UTC (rev 1108)
+++ pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save 2016-04-25 14:33:58 UTC (rev 1109)
@@ -30,7 +30,7 @@
:SweaveListingUtils> Utilities for Sweave Together with
:SweaveListingUtils> TeX 'listings' Package (version
-:SweaveListingUtils> 0.7.3)
+:SweaveListingUtils> 0.7.4)
:SweaveListingUtils>
:SweaveListingUtils> NOTE: Support for this package
:SweaveListingUtils> will stop soon.
@@ -315,680 +315,8 @@
>
> ### ** Examples
>
-> SweaveListingPreparations()
-%------------------------------------------------------------------------------%
-%Preparations for Sweave and Listings
-%------------------------------------------------------------------------------%
-%
-\RequirePackage{color}
-\definecolor{Rcolor}{rgb}{0, 0.5, 0.5}
-\definecolor{RRecomdcolor}{rgb}{0, 0.6, 0.4}
-\definecolor{Rbcolor}{rgb}{0, 0.6, 0.6}
-\definecolor{Routcolor}{rgb}{0.461, 0.039, 0.102}
-\definecolor{Rcommentcolor}{rgb}{0.101, 0.043, 0.432}
-%------------------------------------------------------------------------------%
-\lstdefinelanguage{Rd}[common]{TeX}%
-{moretexcs={acronym,alias,arguments,author,bold,cite,%
- code,command,concept,cr,deqn,describe,%
- description,details,dfn,doctype,dots,%
- dontrun,dontshow,donttest,dQuote,%
- email,emph,enc,encoding,enumerate,env,eqn,%
- examples,file,format,if,ifelse,item,itemize,kbd,keyword,%
- ldots,link,linkS4class,method,name,note,%
- option,out,pkg,preformatted,R,Rdopts,Rdversion,%
- references,S3method,S4method,Sexpr,samp,section,%
- seealso,source,sp,special,sQuote,strong,%
- subsection,synopsis,tab,tabular,testonly,%
- title,url,usage,value,var,verb},
- sensitive=true,%
- morecomment=[l]\%% 2008/9 Peter Ruckdeschel
-}[keywords,comments]%%
-%------------------------------------------------------------------------------%
-
-%----------------
-\lstdefinestyle{RstyleO1}{fancyvrb=true,escapechar=`,extendedchars=false,%
- language=R,%
- basicstyle={\color{Rcolor}\small},%
- keywordstyle={\bf\color{Rcolor}},%Warning in print.taglist(taglist, LineLength = LineLength, offset.start = nchar(startS), :
- Some elements of taglist are too long
-
- commentstyle={\color{Rcommentcolor}\ttfamily\itshape},%
- literate={"}{\texttt{"}}1{<-}{{$\leftarrow$}}2{<<-}{{$\twoheadleftarrow$}}2{~}{{$\sim$}}1{<=}{{$\leq$}}2{>=}{{$\geq$}}2{^}{{$\scriptstyle\wedge$}}1,%
- alsoother={$},%
- alsoletter={.<-},%
- otherkeywords={!,!=,~,$,*,\&,\%/\%,\%*\%,\%\%,<-,<<-,/},%
- escapeinside={(*}{*)}}%
-%----------------
-\lstdefinestyle{Rstyle}{style=RstyleO1}
-
-%----------------
-\lstdefinestyle{Rdstyle}{fancyvrb=true,language=Rd,keywordstyle={\bf},%
- basicstyle={\color{black}\footnotesize},%
- commentstyle={\ttfamily\itshape},%
- alsolanguage=R}%
-%----------------
-%------------------------------------------------------------------------------%
-\global\def\Rlstset{\lstset{style=Rstyle}}%
-\global\def\Rdlstset{\lstset{style=Rdstyle}}%
-%------------------------------------------------------------------------------%
-\global\def\Rinlstset{\lstset{style=Rinstyle}}%
-\global\def\Routlstset{\lstset{style=Routstyle}}%
-\global\def\Rcodelstset{\lstset{style=Rcodestyle}}%
-%------------------------------------------------------------------------------%
-\Rlstset
-%------------------------------------------------------------------------------%
-%copying relevant parts of Sweave.sty
-%------------------------------------------------------------------------------%
-%
-\RequirePackage{graphicx,fancyvrb}%
-\IfFileExists{upquote.sty}{\RequirePackage{upquote}}{}%
-
-\RequirePackage{ifthen}%
-\newboolean{Sweave at gin}%
-\setboolean{Sweave at gin}{true}%
-\setkeys{Gin}{width=0.8\textwidth}%
-\newboolean{Sweave at ae}
-\setboolean{Sweave at ae}{true}%
-\RequirePackage[T1]{fontenc}
-\RequirePackage{ae}
-%
-\newenvironment{Schunk}{}{}
-
-\newcommand{\Sconcordance}[1]{%
-\ifx\pdfoutput\undefined%
-\csname newcount\endcsname\pdfoutput\fi%
-\ifcase\pdfoutput\special{#1}%
-\else\immediate\pdfobj{#1}\fi}
-
-%------------------------------------------------------------------------------%
-% ---- end of parts of Sweave.sty
-%------------------------------------------------------------------------------%
-%
-% ---- input
-\lstdefinestyle{RinstyleO}{style=Rstyle,fancyvrb=true,%
- basicstyle=\color{Rcolor}\small}%
-\lstdefinestyle{Rinstyle}{style=RinstyleO}
-\lstnewenvironment{Sinput}{\Rinlstset}{\Rlstset}
-%
-% ---- output
-\lstdefinestyle{RoutstyleO}{
-V1=0,V2=1,V3=0}%
-\lstdefinestyle{Routstyle}{style=RoutstyleO}
-\lstnewenvironment{Soutput}{\Routlstset}{\Rlstset}
-%
-% ---- code
-\lstdefinestyle{RcodestyleO}{style=Rstyle,fancyvrb=true,fontshape=sl,%
- basicstyle=\color{Rcolor}}%
-\lstdefinestyle{Rcodestyle}{style=RcodestyleO}
-\lstnewenvironment{Scode}{\Rcodelstset}{\Rlstset}
-%
-%------------------------------------------------------------------------------%
-\let\code\lstinline
-\def\Code#1{{\tt\color{Rcolor} #1}}
-\def\file#1{{\tt #1}}
-\def\pkg#1{{\tt "#1"}}
-\newcommand{\pkgversion}{{\tt 2.6}}
-%------------------------------------------------------------------------------%
-Warning in setBaseOrRecommended(pkgs = pkgs) :
- number of items to replace is not a multiple of replacement length
-
-\lstdefinestyle{RstyleO2}{style=RstyleO1,%
-% --------------------------
-% Registration of package SweaveListingUtils
-% --------------------------
-morekeywords={[2]taglist,setToBeDefinedPkgs,setBaseOrRecommended,readSourceFromRForge,readPkgVersion,%
-lstsetRout,lstsetRin,lstsetRd,lstsetRcode,lstsetRall,%
-lstsetR,lstsetLanguage,lstset,lstinputSourceFromRForge,lstdefRstyle,%
-isBaseOrRecommended,getSweaveListingOption,copySourceFromRForge,changeKeywordstyles,SweaveListingoptions,%
-SweaveListingPreparations,SweaveListingOptions,SweaveListingMASK%
-},%
-keywordstyle={[2]{\bf}},%
-%
-% --------------------------
-% Registration of package startupmsg
-% --------------------------
-morekeywords={[3]suppressStartupMessages,startupType,startupPackage,startupMessage,startupEndline,%
-readVersionInformation,readURLInformation,pointertoNEWS,onlytypeStartupMessages,mystartupMessage,%
-mySMHandler,infoShow,buildStartupMessage,TOBEDONE,StartupMessage,%
-NEWS%
-},%
-keywordstyle={[3]{\bf}},%
-%
-% --------------------------
-% Registration of package stats [recommended or base]
-% --------------------------
-morekeywords={[4]xtabs,write.ftable,window<-,wilcox.test,weighted.residuals,%
-weighted.mean,vcov,varimax,variable.names,var.test,%
-update.formula,update.default,tsp<-,tsdiag,tsSmooth,%
-ts.union,ts.plot,ts.intersect,toeplitz,terms.formula,%
-termplot,t.test,supsmu,summary.stepfun,summary.manova,%
-summary.lm,summary.glm,summary.aov,stl,stepfun,%
-stat.anova,splinefunH,spectrum,spec.taper,spec.pgram,%
-spec.ar,sortedXyData,smoothEnds,smooth.spline,smooth,%
-simulate,sigma,shapiro.test,setNames,selfStart,%
-se.contrast,screeplot,scatter.smooth,runmed,rmultinom,%
-residuals.lm,residuals.glm,reshape,reorder,rect.hclust,%
-read.ftable,rWishart,r2dtable,quasipoisson,quasibinomial,%
-quade.test,qbirthday,prop.trend.test,prop.test,promax,%
-printCoefmat,princomp,predict.lm,predict.glm,prcomp,%
-ppr,power.t.test,power.prop.test,power.anova.test,polym,%
-poisson.test,plot.ts,plot.stepfun,plot.spec.phase,plot.spec.coherency,%
-plot.ecdf,plclust,pbirthday,pairwise.wilcox.test,pairwise.table,%
-pairwise.t.test,pairwise.prop.test,pacf,p.adjust.methods,p.adjust,%
-order.dendrogram,optimHess,oneway.test,numericDeriv,nobs,%
-nls.control,nls,nlminb,naresid,naprint,%
-napredict,na.pass,na.omit,na.fail,na.exclude,%
-na.contiguous,na.action,mood.test,monthplot,model.weights,%
-model.tables,model.response,model.offset,model.matrix.lm,model.matrix.default,%
-model.matrix,model.frame.default,model.frame,model.extract,medpolish,%
-median.default,mcnemar.test,mauchly.test,mantelhaen.test,manova,%
-makepredictcall,makeARIMA,make.link,ls.print,ls.diag,%
-logLik,loess.smooth,loess.control,loess,loadings,%
-lm.wfit,lm.influence,lm.fit,line,lag.plot,%
-lag,ksmooth,ks.test,kruskal.test,knots,%
-kmeans,kernel,kernapply,isoreg,is.tskernel,%
-is.ts,is.stepfun,is.mts,is.leaf,is.empty.model,%
-inverse.gaussian,interaction.plot,integrate,influence.measures,heatmap,%
-hclust,hatvalues,glm.fit,glm.control,get_all_vars,%
-getInitial,getCall,friedman.test,fligner.test,fitted.values,%
-fisher.test,filter,factor.scope,factanal,expand.model.frame,%
-estVar,embed,eff.aovlist,ecdf,dummy.coef.lm,%
-dummy.coef,drop.terms,drop.scope,dmultinom,dist,%
-diffinv,dfbeta,df.residual,df.kernel,deriv3,%
-density.default,dendrapply,delete.response,decompose,cutree,%
-cpgram,cov2cor,cov.wt,cor.test,cophenetic,%
-cooks.distance,contrasts<-,contr.treatment,contr.sum,contr.poly,%
-contr.helmert,contr.SAS,constrOptim,confint.lm,confint.default,%
-confint,complete.cases,cmdscale,chisq.test,ccf,%
-case.names,cancor,bw.ucv,bw.nrd0,bw.nrd,%
-bw.bcv,bw.SJ,biplot,binom.test,bartlett.test,%
-bandwidth.kernel,asOneSidedFormula,as.ts,as.stepfun,as.hclust,%
-as.formula,as.dist,as.dendrogram,arima0.diag,arima0,%
-arima.sim,arima,ar.yw,ar.ols,ar.mle,%
-ar.burg,ar,ansari.test,aggregate.ts,aggregate.data.frame,%
-addmargins,add.scope,acf2AR,acf,TukeyHSD,%
-StructTS,SSweibull,SSmicmen,SSlogis,SSgompertz,%
-SSfpl,SSfol,SSbiexp,SSasympOrig,SSasympOff,%
-SSasymp,SSD,PP.test,NLSstRtAsymptote,NLSstLfAsymptote,%
-NLSstClosestX,NLSstAsymptotic,KalmanSmooth,KalmanRun,KalmanLike,%
-KalmanForecast,HoltWinters,Box.test,BIC,ARMAtoMA,%
-ARMAacf,AIC%
-},%
-keywordstyle={[4]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package graphics [recommended or base]
-% --------------------------
-morekeywords={[5]xspline,text.default,stripchart,strheight,split.screen,%
-spineplot,smoothScatter,rasterImage,polypath,points.default,%
-plot.xy,plot.window,plot.new,plot.function,plot.design,%
-plot.default,pie,panel.smooth,pairs.default,lines.default,%
-layout.show,image.default,hist.default,grconvertY,grconvertX,%
-fourfoldplot,filled.contour,erase.screen,dotchart,contour.default,%
-co.intervals,close.screen,clip,cdplot,boxplot.matrix,%
-boxplot.default,barplot.default,axis.POSIXct,axis.Date,axTicks,%
-assocplot,Axis%
-},%
-keywordstyle={[5]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package grDevices [recommended or base]
-% --------------------------
-morekeywords={[6]xyz.coords,xyTable,xy.coords,xfig,windowsFonts,%
-windowsFont,windows.options,windows,win.print,win.metafile,%
-win.graph,trans3d,topo.colors,tiff,terrain.colors,%
-svg,setPS,setGraphicsEventHandlers,setGraphicsEventEnv,setEPS,%
-savePlot,rgb2hsv,replayPlot,recordPlot,recordGraphics,%
-ps.options,postscriptFonts,png,pdfFonts,pdf.options,%
-pdf,nclass.scott,nclass.Sturges,nclass.FD,n2mfrow,%
-msgWindow,make.rgb,jpeg,is.raster,heat.colors,%
-hcl,grey.colors,gray.colors,graphics.off,grSoftVersion,%
-getGraphicsEventEnv,getGraphicsEvent,extendrange,embedFonts,deviceIsInteractive,%
-devAskNewPage,dev.size,dev.set,dev.print,dev.prev,%
-dev.off,dev.next,dev.new,dev.list,dev.interactive,%
-dev.hold,dev.flush,dev.cur,dev.copy2pdf,dev.copy2eps,%
-dev.copy,dev.control,dev.capture,dev.capabilities,densCols,%
-convertColor,contourLines,colorspaces,colorRampPalette,colorRamp,%
-colorConverter,col2rgb,cm.colors,check.options,cairo_ps,%
-cairo_pdf,bringToTop,boxplot.stats,bmp,blues9,%
-bitmap,axisTicks,as.raster,as.graphicsAnnot,adjustcolor,%
-Type1Font,Hershey,CIDFont%
-},%
-keywordstyle={[6]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package utils [recommended or base]
-% --------------------------
-morekeywords={[7]zip.unpack,writeClipboard,write.table,write.socket,write.csv2,%
-write.csv,winProgressBar,winMenuNames,winMenuItems,winMenuDelItem,%
-winMenuDel,winMenuAddItem,winMenuAdd,winDialogString,winDialog,%
-win.version,vignette,url.show,upgrade,update.packages,%
-update.packageStatus,unzip,untar,unstack,undebugcall,%
-type.convert,txtProgressBar,toLatex,toBibtex,timestamp,%
-tar,tail.matrix,tail,suppressForeignCheck,summaryRprof,%
-strcapture,strOptions,str,stack,shortPathName,%
-setWindowTitle,setWinProgressBar,setTxtProgressBar,setStatusBar,setRepositories,%
-setInternet2,setBreakpoint,sessionInfo,select.list,savehistory,%
-rtags,removeSource,remove.packages,relist,recover,%
-readRegistry,readClipboard,readCitationFile,read.table,read.socket,%
-read.fwf,read.fortran,read.delim2,read.delim,read.csv2,%
-read.csv,read.DIF,rc.status,rc.settings,rc.options,%
-rc.getOption,promptPackage,promptImport,promptData,process.events,%
-personList,person,packageVersion,packageStatus,packageName,%
-packageDescription,package.skeleton,old.packages,object.size,news,%
-new.packages,modifyList,mirror2html,memory.size,memory.limit,%
-makeRweaveLatexCodeRunner,make.socket,make.packages.html,maintainer,lsf.str,%
-ls.str,localeToCharset,loadhistory,loadRconsole,limitedLabels,%
-isS3stdGeneric,isS3method,is.relistable,installed.packages,install.packages,%
-hsearch_db_keywords,hsearch_db_concepts,hsearch_db,history,help.start,%
-help.search,help.request,head.matrix,head,globalVariables,%
-glob2rx,getWindowsHandles,getWindowsHandle,getWindowTitle,getWinProgressBar,%
-getTxtProgressBar,getSrcref,getSrcLocation,getSrcFilename,getSrcDirectory,%
-getS3method,getParseText,getParseData,getIdentification,getFromNamespace,%
-getClipboardFormats,getCRANmirrors,getAnywhere,formatUL,formatOL,%
-flush.console,fixInNamespace,findLineNum,file_test,fileSnapshot,%
-file.edit,dump.frames,download.packages,download.file,debugcall,%
-de.setup,de.restore,de.ncols,data.entry,create.post,%
-count.fields,contrib.url,compareVersion,combn,close.socket,%
-citeNatbib,cite,citation,citHeader,citFooter,%
-citEntry,chooseCRANmirror,chooseBioCmirror,choose.files,choose.dir,%
-checkCRAN,changedFiles,capture.output,bug.report,browseVignettes,%
-browseURL,browseEnv,bibentry,available.packages,assignInNamespace,%
-assignInMyNamespace,aspell_write_personal_dictionary_file,aspell_package_vignettes,aspell_package_Rd_files,aspell_package_R_files,%
-aspell_package_C_files,aspell,as.roman,as.relistable,as.personList,%
-as.person,arrangeWindows,argsAnywhere,aregexec,alarm,%
-adist,View,URLencode,URLdecode,SweaveSyntaxNoweb,%
-SweaveSyntaxLatex,SweaveSyntConv,SweaveHooks,Sweave,Stangle,%
-RweaveTryStop,RweaveLatexWritedoc,RweaveLatexSetup,RweaveLatexOptions,RweaveLatexFinish,%
-RweaveLatex,RweaveEvalWithOpt,RweaveChunkPrefix,RtangleWritedoc,RtangleSetup,%
-Rtangle,Rprofmem,Rprof,RSiteSearch,RShowDoc,%
-Filters,DLL.version,CRAN.packages%
-},%
-keywordstyle={[7]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package datasets [recommended or base]
-% --------------------------
-morekeywords={[8]women,warpbreaks,volcano,uspop,trees,%
-treering,swiss,sunspots,sunspot.year,sunspot.month,%
-state.x77,state.region,state.name,state.division,state.center,%
-state.area,state.abb,stackloss,stack.x,stack.loss,%
-sleep,rock,rivers,randu,quakes,%
-pressure,presidents,precip,occupationalStatus,npk,%
-nottem,nhtemp,mtcars,morley,mdeaths,%
-lynx,longley,lh,ldeaths,islands,%
-iris3,iris,infert,freeny.y,freeny.x,%
-freeny,fdeaths,faithful,eurodist,euro.cross,%
-euro,esoph,discoveries,crimtab,co2,%
-chickwts,cars,beaver2,beaver1,austres,%
-attitude,attenu,anscombe,airquality,airmiles,%
-ability.cov,WorldPhones,WWWusage,VADeaths,UScitiesD,%
-USPersonalExpenditure,USJudgeRatings,USArrests,USAccDeaths,UKgas,%
-UKDriverDeaths,UCBAdmissions,ToothGrowth,Titanic,Theoph,%
-Seatbelts,Puromycin,PlantGrowth,OrchardSprays,Orange,%
-Nile,Loblolly,LifeCycleSavings,LakeHuron,JohnsonJohnson,%
-InsectSprays,Indometh,Harman74.cor,Harman23.cor,HairEyeColor,%
-Formaldehyde,EuStockMarkets,DNase,ChickWeight,CO2,%
-BOD,BJsales.lead,BJsales,AirPassengers%
-},%
-keywordstyle={[8]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package methods [recommended or base]
-% --------------------------
-morekeywords={[9]validSlotNames,validObject,unRematchDefinition,tryNew,traceOn,%
-traceOff,testVirtual,testInheritedMethods,superClassDepth,substituteFunctionArgs,%
-substituteDirect,slotsFromS3,slotNames,slot<-,slot,%
-signature,sigToEnv,showMlist,showMethods,showExtends,%
-showDefault,showClass,setValidity,setReplaceMethod,setRefClass,%
-setPrimitiveMethods,setPackageName,setOldClass,setMethod,setLoadActions,%
-setLoadAction,setIs,setGroupGeneric,setGenericImplicit,setGeneric,%
-setDataPart,setClassUnion,setClass,setAs,selectSuperClasses,%
-selectMethod,seemsS4Object,sealClass,resetGeneric,resetClass,%
-requireMethods,representation,removeMethodsObject,removeMethods,removeMethod,%
-removeGeneric,removeClass,rematchDefinition,registerImplicitGenerics,reconcilePropertiesAndPrototype,%
-rbind2,prototype,promptMethods,promptClass,prohibitGeneric,%
-possibleExtends,packageSlot<-,packageSlot,newEmptyObject,newClassRepresentation,%
-newBasic,multipleClasses,mlistMetaName,missingArg,methodsPackageMetaName,%
-methodSignatureMatrix,method.skeleton,metaNameUndo,mergeMethods,matchSignature,%
-makeStandardGeneric,makePrototypeFromClassDef,makeMethodsList,makeGeneric,makeExtends,%
-makeClassRepresentation,loadMethod,listFromMlist,listFromMethods,linearizeMlist,%
-languageEl<-,languageEl,isXS3Class,isVirtualClass,isSealedMethod,%
-isSealedClass,isRematched,isGroup,isGrammarSymbol,isGeneric,%
-isClassUnion,isClassDef,isClass,insertSource,insertMethod,%
-insertClassMethods,initialize,initRefFields,initFieldArgs,inheritedSlotNames,%
-implicitGeneric,hasMethods,hasMethod,hasLoadAction,hasArg,%
-getVirtual,getValidity,getSubclasses,getSlots,getRefClass,%
-getPrototype,getProperties,getPackageName,getMethodsMetaData,getMethodsForDispatch,%
-getMethods,getMethod,getLoadActions,getGroupMembers,getGroup,%
-getGenerics,getGeneric,getFunction,getExtends,getDataPart,%
-getClasses,getClassPackage,getClassName,getClassDef,getClass,%
-getAllSuperClasses,getAllMethods,getAccess,generic.skeleton,functionBody<-,%
-functionBody,formalArgs,fixPre1.8,findUnique,findMethods,%
-findMethodSignatures,findMethod,findFunction,findClass,finalDefaultMethod,%
-externalRefMethod,extends,existsMethod,existsFunction,evalqOnLoad,%
-evalSource,evalOnLoad,emptyMethodsList,empty.dump,elNamed<-,%
-elNamed,el<-,el,dumpMethods,dumpMethod,%
-doPrimitiveMethod,defaultPrototype,defaultDumpName,conformMethod,completeSubclasses,%
-completeExtends,completeClassDefinition,coerce<-,coerce,classesToAM,%
-className,classMetaName,classLabel,checkSlotAssignment,checkAtAssignment,%
-cbind2,canCoerce,callNextMethod,callGeneric,cacheMethod,%
-cacheMetaData,cacheGenericsMetaData,body<-,balanceMethodsList,assignMethodsMetaData,%
-assignClassDef,asMethodDefinition,as<-,allNames,allGenerics,%
-addNextMethod,Summary,SignatureMethod,S3Part<-,S3Part,%
-S3Class<-,S3Class,Quote,MethodsListSelect,MethodsList,%
-MethodAddCoerce,Math2,Logic,Complex,Compare,%
-Arith%
-},%
-keywordstyle={[9]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package base [recommended or base]
-% --------------------------
-morekeywords={[10]xzfile,xtfrm.numeric_version,xtfrm.factor,xtfrm.difftime,xtfrm.default,%
-xtfrm.Surv,xtfrm.POSIXlt,xtfrm.POSIXct,xtfrm.Date,xtfrm.AsIs,%
-xtfrm,xpdrows.data.frame,xor.octmode,xor.hexmode,writeLines,%
-writeChar,writeBin,write.dcf,within.list,within.data.frame,%
-within,withVisible,withRestarts,withCallingHandlers,with.default,%
-with,which.min,which.max,weekdays.POSIXt,weekdays.Date,%
-weekdays,version,vapply,validUTF8,validEnc,%
-utf8ToInt,upper.tri,unz,untracemem,unsplit,%
-unserialize,unlockBinding,unloadNamespace,unix.time,units<-.difftime,%
-units<-,units.difftime,units,unique.warnings,unique.numeric_version,%
-unique.matrix,unique.default,unique.data.frame,unique.array,unique.POSIXlt,%
-tryCatch,truncate.connection,truncate,trunc.POSIXt,trunc.Date,%
-trimws,transform.default,transform.data.frame,tracingState,tracemem,%
-toupper,topenv,tolower,toString.default,toString,%
-textConnectionValue,textConnection,testPlatformEquivalence,tempdir,tcrossprod,%
-taskCallbackManager,tanpi,t.default,t.data.frame,system2,%
-system.time,system.file,sys.status,sys.source,sys.save.image,%
-sys.parents,sys.parent,sys.on.exit,sys.nframe,sys.load.image,%
-sys.function,sys.frames,sys.frame,sys.calls,sys.call,%
-suppressWarnings,suppressPackageStartupMessages,suppressMessages,summary.table,summary.srcref,%
-summary.srcfile,summary.proc_time,summary.matrix,summary.factor,summary.default,%
-summary.data.frame,summary.connection,summary.POSIXlt,summary.POSIXct,summary.Date,%
-substring<-,substr<-,subset.matrix,subset.default,subset.data.frame,%
-strwrap,strtrim,strtoi,strrep,strptime,%
-strftime,storage.mode<-,storage.mode,stopifnot,stdout,%
-stdin,stderr,startsWith,standardGeneric,srcref,%
-srcfilecopy,srcfilealias,srcfile,sprintf,split<-.default,%
-split<-.data.frame,split<-,split.default,split.data.frame,split.POSIXct,%
-split.Date,sort.list,sort.int,sort.default,sort.POSIXlt,%
-solve.qr,solve.default,socketSelect,socketConnection,slice.index,%
-sinpi,sink.number,simplify2array,simpleWarning,simpleMessage,%
-simpleError,simpleCondition,signalCondition,showConnections,shell.exec,%
-shell,shQuote,setTimeLimit,setSessionTimeLimit,setNamespaceInfo,%
-setHook,set.seed,serialize,seq_len,seq_along,%
-seq.int,seq.default,seq.POSIXt,seq.Date,seek.connection,%
-seek,scale.default,saveRDS,save.image,sample.int,%
-sQuote,rowsum.default,rowsum.data.frame,rownames<-,rowSums,%
-rowMeans,row.names<-.default,row.names<-.data.frame,row.names<-,row.names.default,%
-row.names.data.frame,row.names,round.POSIXt,round.Date,rev.default,%
-returnValue,retracemem,restartFormals,restartDescription,requireNamespace,%
-replicate,rep_len,rep.numeric_version,rep.int,rep.factor,%
-rep.POSIXlt,rep.POSIXct,rep.Date,removeTaskCallback,regmatches<-,%
-regmatches,registerS3methods,registerS3method,regexec,reg.finalizer,%
-readRenviron,readRDS,readLines,readChar,readBin,%
-read.dcf,rcond,rbind.data.frame,rawToChar,rawToBits,%
-rawShift,rawConnectionValue,rawConnection,raw,rapply,%
-range.default,quarters.POSIXt,quarters.Date,quarters,qr.solve,%
-qr.resid,qr.qy,qr.qty,qr.fitted,qr.default,%
-qr.coef,qr.X,qr.R,qr.Q,pushBackLength,%
-pushBack,psigamma,provideDimnames,prop.table,proc.time,%
-print.warnings,print.table,print.summaryDefault,print.summary.table,print.srcref,%
-print.srcfile,print.simple.list,print.rle,print.restart,print.proc_time,%
-print.packageInfo,print.octmode,print.numeric_version,print.noquote,print.listof,%
-print.libraryIQR,print.hexmode,print.function,print.factor,print.eigen,%
-print.difftime,print.default,print.data.frame,print.connection,print.condition,%
-print.by,print.POSIXlt,print.POSIXct,print.NativeRoutineList,print.Dlist,%
-print.Date,print.DLLRegisteredRoutines,print.DLLInfoList,print.DLLInfo,print.AsIs,%
-prettyNum,pretty.default,pos.to.env,pmin.int,pmax.int,%
-pipe,pi,pcre_config,path.package,path.expand,%
-paste0,parseNamespaceFile,parent.frame,parent.env<-,parent.env,%
-package_version,packageStartupMessage,packageHasNamespace,packageEvent,packBits,%
-open.srcfilecopy,open.srcfilealias,open.srcfile,open.connection,open,%
-on.exit,oldClass<-,oldClass,nzchar,numeric_version,%
-normalizePath,norm,ngettext,new.env,namespaceImportMethods,%
-namespaceImportFrom,namespaceImportClasses,namespaceImport,namespaceExport,names<-.POSIXlt,%
-names<-,names.POSIXlt,mostattributes<-,months.POSIXt,months.Date,%
-months,month.name,month.abb,mode<-,mget,%
-message,merge.default,merge.data.frame,memory.profile,memDecompress,%
-memCompress,mem.limits,mean.difftime,mean.default,mean.POSIXlt,%
-mean.POSIXct,mean.Date,max.col,match.fun,match.call,%
-match.arg,mat.or.vec,margin.table,mapply,makeActiveBinding,%
-make.unique,make.names,lower.tri,logb,lockEnvironment,%
-lockBinding,loadingNamespaceInfo,loadedNamespaces,loadNamespace,list2env,%
-list.files,list.dirs,library.dynam.unload,library.dynam,libcurlVersion,%
-lfactorial,levels<-.factor,levels<-,levels.default,letters,%
-lengths,length<-.factor,length<-,length.POSIXlt,lazyLoadDBfetch,%
-lazyLoadDBexec,lazyLoad,labels.default,l10n_info,kappa.qr,%
-kappa.lm,kappa.default,julian.POSIXt,julian.Date,julian,%
-isdebugged,isatty,isTRUE,isSymmetric.matrix,isSymmetric,%
-isSeekable,isS4,isRestart,isOpen,isNamespaceLoaded,%
-isNamespace,isIncomplete,isBaseNamespace,is.vector,is.unsorted,%
-is.table,is.symbol,is.single,is.recursive,is.raw,%
-is.qr,is.primitive,is.pairlist,is.package_version,is.ordered,%
-is.object,is.numeric_version,is.numeric.difftime,is.numeric.POSIXt,is.numeric.Date,%
-is.numeric,is.null,is.nan,is.name,is.na<-.numeric_version,%
-is.na<-.factor,is.na<-.default,is.na<-,is.na.numeric_version,is.na.data.frame,%
-is.na.POSIXlt,is.na,is.matrix,is.logical,is.loaded,%
-is.list,is.language,is.integer,is.infinite,is.function,%
-is.finite,is.factor,is.expression,is.environment,is.element,%
-is.double,is.data.frame,is.complex,is.character,is.call,%
-is.atomic,is.array,is.R,invokeRestartInteractively,invokeRestart,%
-inverse.rle,intToUtf8,intToBits,importIntoEnv,identity,%
-identical,icuSetCollate,icuGetCollate,iconvlist,iconv,%
-gzfile,gzcon,grouping,grepl,grepRaw,%
-gregexpr,gettextf,gettext,getTaskCallbackNames,getSrcLines,%
-getRversion,getNativeSymbolInfo,getNamespaceVersion,getNamespaceUsers,getNamespaceName,%
-getNamespaceInfo,getNamespaceImports,getNamespaceExports,getNamespace,getLoadedDLLs,%
-getHook,getExportedValue,getElement,getDLLRegisteredRoutines.character,getDLLRegisteredRoutines.DLLInfo,%
-getDLLRegisteredRoutines,getConnection,getCallingDLLe,getCallingDLL,getAllConnections,%
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/distr -r 1109
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