[Distr-commits] r1088 - in pkg: SweaveListingUtils SweaveListingUtils/man SweaveListingUtils/tests/Examples startupmsg startupmsg/tests/Examples utils
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Sat Apr 23 12:24:20 CEST 2016
Author: ruckdeschel
Date: 2016-04-23 12:24:20 +0200 (Sat, 23 Apr 2016)
New Revision: 1088
Modified:
pkg/SweaveListingUtils/DESCRIPTION
pkg/SweaveListingUtils/man/0SweaveListingUtils-package.Rd
pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save
pkg/startupmsg/DESCRIPTION
pkg/startupmsg/tests/Examples/startupmsg-Ex.Rout.save
pkg/utils/DESCRIPTIONutils.R
pkg/utils/showsvnlog.R
Log:
first round for CRAN submissions:
updated utils/DESCRIPTIONutils.R utils/showsvnlog.R
updated DESCRIPTION and .Rout.save files
Modified: pkg/SweaveListingUtils/DESCRIPTION
===================================================================
--- pkg/SweaveListingUtils/DESCRIPTION 2016-03-07 15:00:28 UTC (rev 1087)
+++ pkg/SweaveListingUtils/DESCRIPTION 2016-04-23 10:24:20 UTC (rev 1088)
@@ -1,11 +1,12 @@
Package: SweaveListingUtils
Title: Utilities for Sweave Together with TeX 'listings' Package
-Description: Provides utilities for defining R / Rd as Tex-package-listings "language" and
- including R / Rd source file (sniplets) copied from R-forge in its most recent version
- (or another url) thereby avoiding inconsistencies between vignette and documented
- source code.
+Description: Package SweaveListingUtils provides utilities for defining R / Rd as "language"
+ for Tex-package-listings and for including R / Rd source file (sniplets) copied from
+ R-forge in its most recent version (or another url) thereby avoiding inconsistencies
+ between vignette and documented source code.
+Version: 0.7
Encoding: latin1
-Version: 0.7
+Date: 2016-04-23
Depends: R(>= 2.14.0), startupmsg
Suggests: distr, MASS, survival, distrEx, Matrix, splines
Imports: methods
@@ -13,7 +14,6 @@
Authors at R: person("Peter", "Ruckdeschel", role=c("cre", "cph"),
email="peter.ruckdeschel at uni-oldenburg.de")
License: LGPL-3
-Date: 2015-11-07
LastChangedDate: {$LastChangedDate$}
LastChangedRevision: {$LastChangedRevision$}
-SVNRevision: 1080
+SVNRevision: 1087
Modified: pkg/SweaveListingUtils/man/0SweaveListingUtils-package.Rd
===================================================================
--- pkg/SweaveListingUtils/man/0SweaveListingUtils-package.Rd 2016-03-07 15:00:28 UTC (rev 1087)
+++ pkg/SweaveListingUtils/man/0SweaveListingUtils-package.Rd 2016-04-23 10:24:20 UTC (rev 1088)
@@ -16,13 +16,13 @@
\tabular{ll}{
Package: \tab SweaveListingUtils \cr
Version: \tab 0.7 \cr
-Date: \tab 2015-11-07 \cr
+Date: \tab 2016-04-23 \cr
Depends: \tab R(>= 2.14.0), startupmsg \cr
Suggests: \tab distr, MASS, survival, distrEx, Matrix, splines \cr
Imports: \tab methods \cr
LazyLoad: \tab yes \cr
License: \tab LGPL-3 \cr
-SVNRevision: \tab 1080 \cr
+SVNRevision: \tab 1087 \cr
}
TeX-package \file{listings}, confer \url{http://www.ctan.org/tex-archive/macros/latex/contrib/listings/},
Modified: pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save
===================================================================
--- pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save 2016-03-07 15:00:28 UTC (rev 1087)
+++ pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save 2016-04-23 10:24:20 UTC (rev 1088)
@@ -1,82 +1,83 @@
-
-R version 3.2.2 Patched (2015-11-06 r69612) -- "Fire Safety"
-Copyright (C) 2015 The R Foundation for Statistical Computing
-Platform: x86_64-pc-linux-gnu (64-bit)
-
-R is free software and comes with ABSOLUTELY NO WARRANTY.
-You are welcome to redistribute it under certain conditions.
-Type 'license()' or 'licence()' for distribution details.
-
- Natural language support but running in an English locale
-
-R is a collaborative project with many contributors.
-Type 'contributors()' for more information and
-'citation()' on how to cite R or R packages in publications.
-
-Type 'demo()' for some demos, 'help()' for on-line help, or
-'help.start()' for an HTML browser interface to help.
-Type 'q()' to quit R.
-
-> pkgname <- "SweaveListingUtils"
-> source(file.path(R.home("share"), "R", "examples-header.R"))
-> options(warn = 1)
-> library('SweaveListingUtils')
-Loading required package: startupmsg
-:startupmsg> Utilities for Start-Up Messages (version 0.9.1)
-:startupmsg>
-:startupmsg> For more information see ?"startupmsg",
-:startupmsg> NEWS("startupmsg")
-
-:SweaveListingUtils> Utilities for Sweave Together with
-:SweaveListingUtils> TeX 'listings' Package (version
-:SweaveListingUtils> 0.7)
-:SweaveListingUtils>
-:SweaveListingUtils> NOTE: Support for this package
-:SweaveListingUtils> will stop soon.
-:SweaveListingUtils>
-:SweaveListingUtils> Package 'knitr' is providing the
-:SweaveListingUtils> same functionality in a better
-:SweaveListingUtils> way.
-:SweaveListingUtils>
-:SweaveListingUtils> Some functions from package 'base'
-:SweaveListingUtils> are intentionally masked ---see
-:SweaveListingUtils> SweaveListingMASK().
-:SweaveListingUtils>
-:SweaveListingUtils> Note that global options are
-:SweaveListingUtils> controlled by
-:SweaveListingUtils> SweaveListingoptions() ---c.f.
-:SweaveListingUtils> ?"SweaveListingoptions".
-:SweaveListingUtils>
-:SweaveListingUtils> For more information see
-:SweaveListingUtils> ?"SweaveListingUtils",
-:SweaveListingUtils> NEWS("SweaveListingUtils")
-:SweaveListingUtils> There is a vignette to this
-:SweaveListingUtils> package; try
-:SweaveListingUtils> vignette("ExampleSweaveListingUtils").
-
-
-Attaching package: ‘SweaveListingUtils’
-
-The following objects are masked from ‘package:base’:
-
- library, require
-
->
-> base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
-> cleanEx()
-> nameEx("SweaveListingMASK")
-> ### * SweaveListingMASK
->
-> flush(stderr()); flush(stdout())
->
-> ### Name: SweaveListingMASK
-> ### Title: Masking of/by other functions in package "SweaveListingUtils"
-> ### Aliases: SweaveListingMASK MASKING
-> ### Keywords: programming documentation
->
-> ### ** Examples
->
-> SweaveListingMASK()
+
+R Under development (unstable) (2016-04-22 r70532) -- "Unsuffered Consequences"
+Copyright (C) 2016 The R Foundation for Statistical Computing
+Platform: i386-w64-mingw32/i386 (32-bit)
+
+R is free software and comes with ABSOLUTELY NO WARRANTY.
+You are welcome to redistribute it under certain conditions.
+Type 'license()' or 'licence()' for distribution details.
+
+ Natural language support but running in an English locale
+
+R is a collaborative project with many contributors.
+Type 'contributors()' for more information and
+'citation()' on how to cite R or R packages in publications.
+
+Type 'demo()' for some demos, 'help()' for on-line help, or
+'help.start()' for an HTML browser interface to help.
+Type 'q()' to quit R.
+
+> pkgname <- "SweaveListingUtils"
+> source(file.path(R.home("share"), "R", "examples-header.R"))
+> options(warn = 1)
+> options(pager = "console")
+> library('SweaveListingUtils')
+Loading required package: startupmsg
+:startupmsg> Utilities for Start-Up Messages (version 0.9.2)
+:startupmsg>
+:startupmsg> For more information see ?"startupmsg",
+:startupmsg> NEWS("startupmsg")
+
+:SweaveListingUtils> Utilities for Sweave Together with
+:SweaveListingUtils> TeX 'listings' Package (version
+:SweaveListingUtils> 0.7)
+:SweaveListingUtils>
+:SweaveListingUtils> NOTE: Support for this package
+:SweaveListingUtils> will stop soon.
+:SweaveListingUtils>
+:SweaveListingUtils> Package 'knitr' is providing the
+:SweaveListingUtils> same functionality in a better
+:SweaveListingUtils> way.
+:SweaveListingUtils>
+:SweaveListingUtils> Some functions from package 'base'
+:SweaveListingUtils> are intentionally masked ---see
+:SweaveListingUtils> SweaveListingMASK().
+:SweaveListingUtils>
+:SweaveListingUtils> Note that global options are
+:SweaveListingUtils> controlled by
+:SweaveListingUtils> SweaveListingoptions() ---c.f.
+:SweaveListingUtils> ?"SweaveListingoptions".
+:SweaveListingUtils>
+:SweaveListingUtils> For more information see
+:SweaveListingUtils> ?"SweaveListingUtils",
+:SweaveListingUtils> NEWS("SweaveListingUtils")
+:SweaveListingUtils> There is a vignette to this
+:SweaveListingUtils> package; try
+:SweaveListingUtils> vignette("ExampleSweaveListingUtils").
+
+
+Attaching package: 'SweaveListingUtils'
+
+The following objects are masked from 'package:base':
+
+ library, require
+
+>
+> base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
+> cleanEx()
+> nameEx("SweaveListingMASK")
+> ### * SweaveListingMASK
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: SweaveListingMASK
+> ### Title: Masking of/by other functions in package "SweaveListingUtils"
+> ### Aliases: SweaveListingMASK MASKING
+> ### Keywords: programming documentation
+>
+> ### ** Examples
+>
+> SweaveListingMASK()
######################################################################
# On masking of and by other functions in package "SweaveListingUtils"
######################################################################
@@ -105,3230 +106,3241 @@
*** non-intentional masking: ***
-... nothing discovered so far ...
->
->
->
-> cleanEx()
-> nameEx("SweaveListingOptions")
-> ### * SweaveListingOptions
->
-> flush(stderr()); flush(stdout())
->
-> ### Name: SweaveListingOptions
-> ### Title: Function to change the global options of the package
-> ### 'SweaveListingUtils'
-> ### Aliases: SweaveListingOptions SweaveListingoptions
-> ### getSweaveListingOption Rset Rdset Rin Rout Rcode Rcolor Rbcolor
-> ### Routcolor RRecomdcolor Rcommentcolor pkg pkv Keywordstyle
-> ### Recomd.Keywordstyle interm.Keywordstyle intermediate overwrite
-> ### inSweave fromRForge base.url addRset addRdset fileCommand pkgCommand
-> ### Keywords: misc utilities
->
-> ### ** Examples
->
-> SweaveListingOptions()
-$Rset
-$Rset$fancyvrb
-[1] "true"
-
-$Rset$escapechar
-[1] "`"
-
-$Rset$extendedchars
-[1] "false"
-
-$Rset$language
-[1] "R"
-
-$Rset$basicstyle
-[1] "{\\color{Rcolor}\\small}"
-
-$Rset$keywordstyle
-[1] "{\\bf\\color{Rcolor}}"
-
-$Rset$commentstyle
-[1] "{\\color{Rcommentcolor}\\ttfamily\\itshape}"
-
-$Rset$literate
-[1] "{\"}{\\texttt{\"}}1{<-}{{$\\leftarrow$}}2{<<-}{{$\\twoheadleftarrow$}}2{~}{{$\\sim$}}1{<=}{{$\\leq$}}2{>=}{{$\\geq$}}2{^}{{$\\scriptstyle\\wedge$}}1"
-
-$Rset$alsoother
-[1] "{$}"
-
-$Rset$alsoletter
-[1] "{.<-}"
-
-$Rset$otherkeywords
-[1] "{!,!=,~,$,*,\\&,\\%/\\%,\\%*\\%,\\%\\%,<-,<<-,/}"
-
-$Rset$escapeinside
-[1] "{(*}{*)}"
-
-
-$Rdset
-$Rdset$fancyvrb
-[1] "true"
-
-$Rdset$language
-[1] "Rd"
-
-$Rdset$keywordstyle
-[1] "{\\bf}"
-
-$Rdset$basicstyle
-[1] "{\\color{black}\\footnotesize}"
-
-$Rdset$commentstyle
-[1] "{\\ttfamily\\itshape}"
-
-$Rdset$alsolanguage
-[1] "R"
-
-
-$Rin
-$Rin$style
-[1] "Rstyle"
-
-$Rin$fancyvrb
-[1] "true"
-
-$Rin$basicstyle
-[1] "\\color{Rcolor}\\small"
-
-
-$Rout
-$Rout$fancyvrb
-[1] "false"
-
-$Rout$basicstyle
-[1] "\\color{Routcolor}\\small"
-
-
-$Rcode
-$Rcode$style
-[1] "Rstyle"
-
-$Rcode$fancyvrb
-[1] "true"
-
-$Rcode$fontshape
-[1] "sl"
-
-$Rcode$basicstyle
-[1] "\\color{Rcolor}"
-
-
-$Rcolor
-[1] 0.0 0.5 0.5
-
-$RRecomdcolor
-[1] 0.0 0.6 0.4
-
-$Rbcolor
-[1] 0.0 0.6 0.6
-
-$Routcolor
-[1] 0.461 0.039 0.102
-
-$Rcommentcolor
-[1] 0.101 0.043 0.432
-
-$pkv
-[1] "2.5"
-
-$pkg
-[1] "distr"
-
-$Keywordstyle
-[1] "{\\bf}"
-
-$Recomd.Keywordstyle
-[1] "{\\bf\\color{RRecomdcolor}}"
-
-$interm.Keywordstyle
-[1] "{\\bf\\color{Rbcolor}}"
-
-$overwrite
-[1] FALSE
-
-$intermediate
-[1] TRUE
-
-$inSweave
-[1] FALSE
-
-$fromRForge
-[1] TRUE
-
-$base.url
-[1] "http://r-forge.r-project.org/scm/viewvc.php/*checkout*/pkg/"
-
-$addRset
-[1] TRUE
-
-$addRdset
-[1] TRUE
-
-$addRinset
-[1] TRUE
-
-$addRoutset
-[1] TRUE
-
-$addRcodeset
-[1] TRUE
-
-$fileCommand
-[1] "\\def\\file#1{{\\tt #1}}"
-
-$pkgCommand
-[1] "\\def\\pkg#1{{\\tt \"#1\"}}"
-
-> SweaveListingOptions("Rout")
-$Rout
-$Rout$fancyvrb
-[1] "false"
-
-$Rout$basicstyle
-[1] "\\color{Routcolor}\\small"
-
-
-> SweaveListingOptions("Rout" = c(0,0,0))
-> # or
-> SweaveListingOptions(Rout = c(0,1,0))
-> getSweaveListingOption("Rout")
-[1] 0 1 0
->
->
->
-> cleanEx()
-> nameEx("SweaveListingPreparations")
-> ### * SweaveListingPreparations
->
-> flush(stderr()); flush(stdout())
->
-> ### Name: SweaveListingPreparations
-> ### Title: SweaveListingPreparations
-> ### Aliases: SweaveListingPreparations
-> ### Keywords: utilities
->
-> ### ** Examples
->
-> SweaveListingPreparations()
-%------------------------------------------------------------------------------%
-%Preparations for Sweave and Listings
-%------------------------------------------------------------------------------%
-%
-\RequirePackage{color}
-\definecolor{Rcolor}{rgb}{0, 0.5, 0.5}
-\definecolor{RRecomdcolor}{rgb}{0, 0.6, 0.4}
-\definecolor{Rbcolor}{rgb}{0, 0.6, 0.6}
-\definecolor{Routcolor}{rgb}{0.461, 0.039, 0.102}
-\definecolor{Rcommentcolor}{rgb}{0.101, 0.043, 0.432}
-%------------------------------------------------------------------------------%
-\lstdefinelanguage{Rd}[common]{TeX}%
-{moretexcs={acronym,alias,arguments,author,bold,cite,%
- code,command,concept,cr,deqn,describe,%
- description,details,dfn,doctype,dots,%
- dontrun,dontshow,donttest,dQuote,%
- email,emph,enc,encoding,enumerate,env,eqn,%
- examples,file,format,if,ifelse,item,itemize,kbd,keyword,%
- ldots,link,linkS4class,method,name,note,%
- option,out,pkg,preformatted,R,Rdopts,Rdversion,%
- references,S3method,S4method,Sexpr,samp,section,%
- seealso,source,sp,special,sQuote,strong,%
- subsection,synopsis,tab,tabular,testonly,%
- title,url,usage,value,var,verb},
- sensitive=true,%
- morecomment=[l]\%% 2008/9 Peter Ruckdeschel
-}[keywords,comments]%%
-%------------------------------------------------------------------------------%
-
-%----------------
-\lstdefinestyle{RstyleO1}{fancyvrb=true,escapechar=`,extendedchars=false,%
- language=R,%
- basicstyle={\color{Rcolor}\small},%
- keywordstyle={\bf\color{Rcolor}},%Warning in print.taglist(taglist, LineLength = LineLength, offset.start = nchar(startS), :
- Some elements of taglist are too long
-
- commentstyle={\color{Rcommentcolor}\ttfamily\itshape},%
- literate={"}{\texttt{"}}1{<-}{{$\leftarrow$}}2{<<-}{{$\twoheadleftarrow$}}2{~}{{$\sim$}}1{<=}{{$\leq$}}2{>=}{{$\geq$}}2{^}{{$\scriptstyle\wedge$}}1,%
- alsoother={$},%
- alsoletter={.<-},%
- otherkeywords={!,!=,~,$,*,\&,\%/\%,\%*\%,\%\%,<-,<<-,/},%
- escapeinside={(*}{*)}}%
-%----------------
-\lstdefinestyle{Rstyle}{style=RstyleO1}
-
-%----------------
-\lstdefinestyle{Rdstyle}{fancyvrb=true,language=Rd,keywordstyle={\bf},%
- basicstyle={\color{black}\footnotesize},%
- commentstyle={\ttfamily\itshape},%
- alsolanguage=R}%
-%----------------
-%------------------------------------------------------------------------------%
-\global\def\Rlstset{\lstset{style=Rstyle}}%
-\global\def\Rdlstset{\lstset{style=Rdstyle}}%
-%------------------------------------------------------------------------------%
-\global\def\Rinlstset{\lstset{style=Rinstyle}}%
-\global\def\Routlstset{\lstset{style=Routstyle}}%
-\global\def\Rcodelstset{\lstset{style=Rcodestyle}}%
-%------------------------------------------------------------------------------%
-\Rlstset
-%------------------------------------------------------------------------------%
-%copying relevant parts of Sweave.sty
-%------------------------------------------------------------------------------%
-%
-\RequirePackage{graphicx,fancyvrb}%
-\IfFileExists{upquote.sty}{\RequirePackage{upquote}}{}%
-
-\RequirePackage{ifthen}%
-\newboolean{Sweave at gin}%
-\setboolean{Sweave at gin}{true}%
-\setkeys{Gin}{width=0.8\textwidth}%
-\newboolean{Sweave at ae}
-\setboolean{Sweave at ae}{true}%
-\RequirePackage[T1]{fontenc}
-\RequirePackage{ae}
-%
-\newenvironment{Schunk}{}{}
-
-\newcommand{\Sconcordance}[1]{%
-\ifx\pdfoutput\undefined%
-\csname newcount\endcsname\pdfoutput\fi%
-\ifcase\pdfoutput\special{#1}%
-\else\immediate\pdfobj{#1}\fi}
-
-%------------------------------------------------------------------------------%
-% ---- end of parts of Sweave.sty
-%------------------------------------------------------------------------------%
-%
-% ---- input
-\lstdefinestyle{RinstyleO}{style=Rstyle,fancyvrb=true,%
- basicstyle=\color{Rcolor}\small}%
-\lstdefinestyle{Rinstyle}{style=RinstyleO}
-\lstnewenvironment{Sinput}{\Rinlstset}{\Rlstset}
-%
-% ---- output
-\lstdefinestyle{RoutstyleO}{
-V1=0,V2=1,V3=0}%
-\lstdefinestyle{Routstyle}{style=RoutstyleO}
-\lstnewenvironment{Soutput}{\Routlstset}{\Rlstset}
-%
-% ---- code
-\lstdefinestyle{RcodestyleO}{style=Rstyle,fancyvrb=true,fontshape=sl,%
- basicstyle=\color{Rcolor}}%
-\lstdefinestyle{Rcodestyle}{style=RcodestyleO}
-\lstnewenvironment{Scode}{\Rcodelstset}{\Rlstset}
-%
-%------------------------------------------------------------------------------%
-\let\code\lstinline
-\def\Code#1{{\tt\color{Rcolor} #1}}
-\def\file#1{{\tt #1}}
-\def\pkg#1{{\tt "#1"}}
-\newcommand{\pkgversion}{{\tt 2.6}}
-%------------------------------------------------------------------------------%
-Warning in setBaseOrRecommended(pkgs = pkgs) :
- number of items to replace is not a multiple of replacement length
-
-\lstdefinestyle{RstyleO2}{style=RstyleO1,%
-% --------------------------
-% Registration of package SweaveListingUtils
-% --------------------------
-morekeywords={[2]taglist,setToBeDefinedPkgs,setBaseOrRecommended,readSourceFromRForge,readPkgVersion,%
-lstsetRout,lstsetRin,lstsetRd,lstsetRcode,lstsetRall,%
-lstsetR,lstsetLanguage,lstset,lstinputSourceFromRForge,lstdefRstyle,%
-isBaseOrRecommended,getSweaveListingOption,copySourceFromRForge,changeKeywordstyles,SweaveListingoptions,%
-SweaveListingPreparations,SweaveListingOptions,SweaveListingMASK%
-},%
-keywordstyle={[2]{\bf}},%
-%
-% --------------------------
-% Registration of package startupmsg
-% --------------------------
-morekeywords={[3]suppressStartupMessages,startupType,startupPackage,startupMessage,startupEndline,%
-readVersionInformation,readURLInformation,pointertoNEWS,onlytypeStartupMessages,mystartupMessage,%
-mySMHandler,infoShow,buildStartupMessage,TOBEDONE,StartupMessage,%
-NEWS%
-},%
-keywordstyle={[3]{\bf}},%
-%
-% --------------------------
-% Registration of package stats [recommended or base]
-% --------------------------
-morekeywords={[4]xtabs,write.ftable,window<-,wilcox.test,weighted.residuals,%
-weighted.mean,vcov,varimax,variable.names,var.test,%
-update.formula,update.default,tsp<-,tsdiag,tsSmooth,%
-ts.union,ts.plot,ts.intersect,toeplitz,terms.formula,%
-termplot,t.test,supsmu,summary.stepfun,summary.manova,%
-summary.lm,summary.glm,summary.aov,stl,stepfun,%
-stat.anova,splinefunH,spectrum,spec.taper,spec.pgram,%
-spec.ar,sortedXyData,smoothEnds,smooth.spline,smooth,%
-simulate,shapiro.test,setNames,selfStart,se.contrast,%
-screeplot,scatter.smooth,runmed,rmultinom,residuals.lm,%
-residuals.glm,reshape,reorder,rect.hclust,read.ftable,%
-rWishart,r2dtable,quasipoisson,quasibinomial,quade.test,%
-qbirthday,prop.trend.test,prop.test,promax,printCoefmat,%
-princomp,predict.lm,predict.glm,prcomp,ppr,%
-power.t.test,power.prop.test,power.anova.test,polym,poisson.test,%
-plot.ts,plot.stepfun,plot.spec.phase,plot.spec.coherency,plot.ecdf,%
-plclust,pbirthday,pairwise.wilcox.test,pairwise.table,pairwise.t.test,%
-pairwise.prop.test,pacf,p.adjust.methods,p.adjust,order.dendrogram,%
-optimHess,oneway.test,numericDeriv,nobs,nls.control,%
-nls,nlminb,naresid,naprint,napredict,%
-na.pass,na.omit,na.fail,na.exclude,na.contiguous,%
-na.action,mood.test,monthplot,model.weights,model.tables,%
-model.response,model.offset,model.matrix.lm,model.matrix.default,model.matrix,%
-model.frame.default,model.frame,model.extract,medpolish,median.default,%
-mcnemar.test,mauchly.test,mantelhaen.test,manova,makepredictcall,%
-makeARIMA,make.link,ls.print,ls.diag,logLik,%
-loess.smooth,loess.control,loess,loadings,lm.wfit,%
-lm.influence,lm.fit,line,lag.plot,lag,%
-ksmooth,ks.test,kruskal.test,knots,kmeans,%
-kernel,kernapply,isoreg,is.tskernel,is.ts,%
-is.stepfun,is.mts,is.leaf,is.empty.model,inverse.gaussian,%
-interaction.plot,integrate,influence.measures,heatmap,hclust,%
-hatvalues,glm.fit,glm.control,get_all_vars,getInitial,%
-getCall,friedman.test,fligner.test,fitted.values,fisher.test,%
-filter,factor.scope,factanal,expand.model.frame,estVar,%
-embed,eff.aovlist,ecdf,dummy.coef.lm,dummy.coef,%
-drop.terms,drop.scope,dmultinom,dist,diffinv,%
-dfbeta,df.residual,df.kernel,deriv3,density.default,%
-dendrapply,delete.response,decompose,cutree,cpgram,%
-cov2cor,cov.wt,cor.test,cophenetic,cooks.distance,%
-contrasts<-,contr.treatment,contr.sum,contr.poly,contr.helmert,%
-contr.SAS,constrOptim,confint.lm,confint.default,confint,%
-complete.cases,cmdscale,chisq.test,ccf,case.names,%
-cancor,bw.ucv,bw.nrd0,bw.nrd,bw.bcv,%
-bw.SJ,biplot,binom.test,bartlett.test,bandwidth.kernel,%
-asOneSidedFormula,as.ts,as.stepfun,as.hclust,as.formula,%
-as.dist,as.dendrogram,arima0.diag,arima0,arima.sim,%
-arima,ar.yw,ar.ols,ar.mle,ar.burg,%
-ar,ansari.test,aggregate.ts,aggregate.data.frame,addmargins,%
-add.scope,acf2AR,acf,TukeyHSD,StructTS,%
-SSweibull,SSmicmen,SSlogis,SSgompertz,SSfpl,%
-SSfol,SSbiexp,SSasympOrig,SSasympOff,SSasymp,%
-SSD,PP.test,NLSstRtAsymptote,NLSstLfAsymptote,NLSstClosestX,%
-NLSstAsymptotic,KalmanSmooth,KalmanRun,KalmanLike,KalmanForecast,%
-HoltWinters,Box.test,BIC,ARMAtoMA,ARMAacf,%
-AIC%
-},%
-keywordstyle={[4]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package graphics [recommended or base]
-% --------------------------
-morekeywords={[5]xspline,text.default,stripchart,strheight,split.screen,%
-spineplot,smoothScatter,rasterImage,polypath,points.default,%
-plot.xy,plot.window,plot.new,plot.function,plot.design,%
-plot.default,pie,panel.smooth,pairs.default,lines.default,%
-layout.show,image.default,hist.default,grconvertY,grconvertX,%
-fourfoldplot,filled.contour,erase.screen,dotchart,contour.default,%
-co.intervals,close.screen,clip,cdplot,boxplot.matrix,%
-boxplot.default,barplot.default,axis.POSIXct,axis.Date,axTicks,%
-assocplot,Axis%
-},%
-keywordstyle={[5]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package grDevices [recommended or base]
-% --------------------------
-morekeywords={[6]xyz.coords,xyTable,xy.coords,xfig,trans3d,%
-topo.colors,tiff,terrain.colors,svg,setPS,%
-setGraphicsEventHandlers,setGraphicsEventEnv,setEPS,savePlot,rgb2hsv,%
-replayPlot,recordPlot,recordGraphics,quartzFonts,quartzFont,%
-quartz.save,quartz.options,quartz,ps.options,postscriptFonts,%
-png,pdfFonts,pdf.options,pdf,nclass.scott,%
-nclass.Sturges,nclass.FD,n2mfrow,make.rgb,jpeg,%
-is.raster,heat.colors,hcl,grey.colors,gray.colors,%
-graphics.off,grSoftVersion,getGraphicsEventEnv,getGraphicsEvent,extendrange,%
-embedFonts,deviceIsInteractive,devAskNewPage,dev.size,dev.set,%
-dev.print,dev.prev,dev.off,dev.next,dev.new,%
-dev.list,dev.interactive,dev.hold,dev.flush,dev.cur,%
-dev.copy2pdf,dev.copy2eps,dev.copy,dev.control,dev.capture,%
-dev.capabilities,densCols,convertColor,contourLines,colorspaces,%
-colorRampPalette,colorRamp,colorConverter,col2rgb,cm.colors,%
-check.options,cairo_ps,cairo_pdf,boxplot.stats,bmp,%
-blues9,bitmap,axisTicks,as.raster,as.graphicsAnnot,%
-adjustcolor,X11Fonts,X11Font,X11.options,Type1Font,%
-Hershey,CIDFont%
-},%
-keywordstyle={[6]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package utils [recommended or base]
-% --------------------------
-morekeywords={[7]write.table,write.socket,write.csv2,write.csv,vignette,%
-url.show,upgrade,update.packages,update.packageStatus,unzip,%
-untar,unstack,type.convert,txtProgressBar,toLatex,%
-toBibtex,timestamp,tar,tail.matrix,tail,%
-suppressForeignCheck,summaryRprof,strOptions,str,stack,%
-setTxtProgressBar,setRepositories,setBreakpoint,sessionInfo,select.list,%
-savehistory,rtags,removeSource,remove.packages,relist,%
-recover,readCitationFile,read.table,read.socket,read.fwf,%
-read.fortran,read.delim2,read.delim,read.csv2,read.csv,%
-read.DIF,rc.status,rc.settings,rc.options,rc.getOption,%
-promptPackage,promptImport,promptData,process.events,personList,%
-person,packageVersion,packageStatus,packageName,packageDescription,%
-package.skeleton,old.packages,object.size,nsl,news,%
-new.packages,modifyList,mirror2html,memory.size,memory.limit,%
-makeRweaveLatexCodeRunner,make.socket,make.packages.html,maintainer,lsf.str,%
-ls.str,localeToCharset,loadhistory,limitedLabels,is.relistable,%
-installed.packages,install.packages,hsearch_db_keywords,hsearch_db_concepts,hsearch_db,%
-history,help.start,help.search,help.request,head.matrix,%
-head,globalVariables,glob2rx,getTxtProgressBar,getSrcref,%
-getSrcLocation,getSrcFilename,getSrcDirectory,getS3method,getParseText,%
-getParseData,getFromNamespace,getCRANmirrors,getAnywhere,formatUL,%
-formatOL,flush.console,fixInNamespace,findLineNum,file_test,%
-fileSnapshot,file.edit,dump.frames,download.packages,download.file,%
-de.setup,de.restore,de.ncols,data.entry,create.post,%
-count.fields,contrib.url,compareVersion,combn,close.socket,%
-citeNatbib,cite,citation,citHeader,citFooter,%
-citEntry,chooseCRANmirror,chooseBioCmirror,checkCRAN,changedFiles,%
-capture.output,bug.report,browseVignettes,browseURL,browseEnv,%
-bibentry,available.packages,assignInNamespace,assignInMyNamespace,aspell_write_personal_dictionary_file,%
-aspell_package_vignettes,aspell_package_Rd_files,aspell_package_R_files,aspell_package_C_files,aspell,%
-as.roman,as.relistable,as.personList,as.person,argsAnywhere,%
-aregexec,alarm,adist,View,URLencode,%
-URLdecode,SweaveSyntaxNoweb,SweaveSyntaxLatex,SweaveSyntConv,SweaveHooks,%
-Sweave,Stangle,RweaveTryStop,RweaveLatexWritedoc,RweaveLatexSetup,%
-RweaveLatexOptions,RweaveLatexFinish,RweaveLatex,RweaveEvalWithOpt,RweaveChunkPrefix,%
-RtangleWritedoc,RtangleSetup,Rtangle,Rprofmem,Rprof,%
-RSiteSearch,RShowDoc,CRAN.packages%
-},%
-keywordstyle={[7]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package datasets [recommended or base]
-% --------------------------
-morekeywords={[8]women,warpbreaks,volcano,uspop,trees,%
-treering,swiss,sunspots,sunspot.year,sunspot.month,%
-state.x77,state.region,state.name,state.division,state.center,%
-state.area,state.abb,stackloss,stack.x,stack.loss,%
-sleep,rock,rivers,randu,quakes,%
-pressure,presidents,precip,occupationalStatus,npk,%
-nottem,nhtemp,mtcars,morley,mdeaths,%
-lynx,longley,lh,ldeaths,islands,%
-iris3,iris,infert,freeny.y,freeny.x,%
-freeny,fdeaths,faithful,eurodist,euro.cross,%
-euro,esoph,discoveries,crimtab,co2,%
-chickwts,cars,beaver2,beaver1,austres,%
-attitude,attenu,anscombe,airquality,airmiles,%
-ability.cov,WorldPhones,WWWusage,VADeaths,UScitiesD,%
-USPersonalExpenditure,USJudgeRatings,USArrests,USAccDeaths,UKgas,%
-UKDriverDeaths,UCBAdmissions,ToothGrowth,Titanic,Theoph,%
-Seatbelts,Puromycin,PlantGrowth,OrchardSprays,Orange,%
-Nile,Loblolly,LifeCycleSavings,LakeHuron,JohnsonJohnson,%
-InsectSprays,Indometh,Harman74.cor,Harman23.cor,HairEyeColor,%
-Formaldehyde,EuStockMarkets,DNase,ChickWeight,CO2,%
-BOD,BJsales.lead,BJsales,AirPassengers%
-},%
-keywordstyle={[8]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package methods [recommended or base]
-% --------------------------
-morekeywords={[9]validSlotNames,validObject,unRematchDefinition,tryNew,traceOn,%
-traceOff,testVirtual,testInheritedMethods,superClassDepth,substituteFunctionArgs,%
-substituteDirect,slotsFromS3,slotNames,slot<-,slot,%
-signature,sigToEnv,showMlist,showMethods,showExtends,%
-showDefault,showClass,setValidity,setReplaceMethod,setRefClass,%
-setPrimitiveMethods,setPackageName,setOldClass,setMethod,setLoadActions,%
-setLoadAction,setIs,setGroupGeneric,setGenericImplicit,setGeneric,%
-setDataPart,setClassUnion,setClass,setAs,selectSuperClasses,%
-selectMethod,seemsS4Object,sealClass,resetGeneric,resetClass,%
-requireMethods,representation,removeMethodsObject,removeMethods,removeMethod,%
-removeGeneric,removeClass,rematchDefinition,registerImplicitGenerics,reconcilePropertiesAndPrototype,%
-rbind2,prototype,promptMethods,promptClass,prohibitGeneric,%
-possibleExtends,packageSlot<-,packageSlot,newEmptyObject,newClassRepresentation,%
-newBasic,multipleClasses,mlistMetaName,missingArg,methodsPackageMetaName,%
-methodSignatureMatrix,method.skeleton,metaNameUndo,mergeMethods,matchSignature,%
-makeStandardGeneric,makePrototypeFromClassDef,makeMethodsList,makeGeneric,makeExtends,%
-makeClassRepresentation,loadMethod,listFromMlist,listFromMethods,linearizeMlist,%
-languageEl<-,languageEl,isXS3Class,isVirtualClass,isSealedMethod,%
-isSealedClass,isGroup,isGrammarSymbol,isGeneric,isClassUnion,%
-isClassDef,isClass,insertSource,insertMethod,insertClassMethods,%
-initialize,initRefFields,initFieldArgs,inheritedSlotNames,implicitGeneric,%
-hasMethods,hasMethod,hasLoadAction,hasArg,getVirtual,%
-getValidity,getSubclasses,getSlots,getRefClass,getPrototype,%
-getProperties,getPackageName,getMethodsMetaData,getMethodsForDispatch,getMethods,%
-getMethod,getLoadActions,getGroupMembers,getGroup,getGenerics,%
-getGeneric,getFunction,getExtends,getDataPart,getClasses,%
-getClassPackage,getClassName,getClassDef,getClass,getAllSuperClasses,%
-getAllMethods,getAccess,generic.skeleton,functionBody<-,functionBody,%
-formalArgs,fixPre1.8,findUnique,findMethods,findMethodSignatures,%
-findMethod,findFunction,findClass,finalDefaultMethod,extends,%
-existsMethod,existsFunction,evalqOnLoad,evalSource,evalOnLoad,%
-emptyMethodsList,empty.dump,elNamed<-,elNamed,el<-,%
-el,dumpMethods,dumpMethod,doPrimitiveMethod,defaultPrototype,%
-defaultDumpName,conformMethod,completeSubclasses,completeExtends,completeClassDefinition,%
-coerce<-,coerce,classesToAM,className,classMetaName,%
-classLabel,checkSlotAssignment,checkAtAssignment,cbind2,canCoerce,%
-callNextMethod,callGeneric,cacheMethod,cacheMetaData,cacheGenericsMetaData,%
-body<-,balanceMethodsList,assignMethodsMetaData,assignClassDef,asMethodDefinition,%
-as<-,allNames,allGenerics,addNextMethod,Summary,%
-SignatureMethod,S3Part<-,S3Part,S3Class<-,S3Class,%
-Quote,MethodsListSelect,MethodsList,MethodAddCoerce,Math2,%
-Logic,Complex,Compare,Arith%
-},%
-keywordstyle={[9]{\bf\color{RRecomdcolor}}},%
-%
-% --------------------------
-% Registration of package base [recommended or base]
-% --------------------------
-morekeywords={[10]xzfile,xtfrm.numeric_version,xtfrm.factor,xtfrm.difftime,xtfrm.default,%
-xtfrm.Surv,xtfrm.POSIXlt,xtfrm.POSIXct,xtfrm.Date,xtfrm.AsIs,%
-xtfrm,xpdrows.data.frame,xor.octmode,xor.hexmode,writeLines,%
-writeChar,writeBin,write.dcf,within.list,within.data.frame,%
-within,withVisible,withRestarts,withCallingHandlers,with.default,%
-with,which.min,which.max,weekdays.POSIXt,weekdays.Date,%
-weekdays,version,vapply,utf8ToInt,upper.tri,%
-unz,untracemem,unsplit,unserialize,unlockBinding,%
-unloadNamespace,unix.time,units<-.difftime,units<-,units.difftime,%
-units,unique.warnings,unique.numeric_version,unique.matrix,unique.default,%
-unique.data.frame,unique.array,unique.POSIXlt,tryCatch,truncate.connection,%
-truncate,trunc.POSIXt,trunc.Date,trimws,transform.default,%
-transform.data.frame,tracingState,tracemem,toupper,topenv,%
-tolower,toString.default,toString,textConnectionValue,textConnection,%
-testPlatformEquivalence,tempdir,tcrossprod,taskCallbackManager,tanpi,%
-t.default,t.data.frame,system2,system.time,system.file,%
-sys.status,sys.source,sys.save.image,sys.parents,sys.parent,%
-sys.on.exit,sys.nframe,sys.load.image,sys.function,sys.frames,%
-sys.frame,sys.calls,sys.call,suppressWarnings,suppressPackageStartupMessages,%
-suppressMessages,summary.table,summary.srcref,summary.srcfile,summary.proc_time,%
-summary.matrix,summary.factor,summary.default,summary.data.frame,summary.connection,%
-summary.POSIXlt,summary.POSIXct,summary.Date,substring<-,substr<-,%
-subset.matrix,subset.default,subset.data.frame,strwrap,strtrim,%
-strtoi,strptime,strftime,storage.mode<-,storage.mode,%
-stopifnot,stdout,stdin,stderr,standardGeneric,%
-srcref,srcfilecopy,srcfilealias,srcfile,sprintf,%
-split<-.default,split<-.data.frame,split<-,split.default,split.data.frame,%
-split.POSIXct,split.Date,sort.list,sort.int,sort.default,%
-sort.POSIXlt,solve.qr,solve.default,socketSelect,socketConnection,%
-slice.index,sinpi,sink.number,simplify2array,simpleWarning,%
-simpleMessage,simpleError,simpleCondition,signalCondition,showConnections,%
-shQuote,setTimeLimit,setSessionTimeLimit,setNamespaceInfo,setHook,%
-set.seed,serialize,seq_len,seq_along,seq.int,%
-seq.default,seq.POSIXt,seq.Date,seek.connection,seek,%
-scale.default,saveRDS,save.image,sample.int,sQuote,%
-rowsum.default,rowsum.data.frame,rownames<-,rowSums,rowMeans,%
-row.names<-.default,row.names<-.data.frame,row.names<-,row.names.default,row.names.data.frame,%
-row.names,round.POSIXt,round.Date,rev.default,returnValue,%
-retracemem,restartFormals,restartDescription,requireNamespace,replicate,%
-rep_len,rep.numeric_version,rep.int,rep.factor,rep.POSIXlt,%
-rep.POSIXct,rep.Date,removeTaskCallback,regmatches<-,regmatches,%
-registerS3methods,registerS3method,regexec,reg.finalizer,readRenviron,%
-readRDS,readLines,readChar,readBin,read.dcf,%
-rcond,rbind.data.frame,rawToChar,rawToBits,rawShift,%
-rawConnectionValue,rawConnection,raw,rapply,range.default,%
-quarters.POSIXt,quarters.Date,quarters,qr.solve,qr.resid,%
-qr.qy,qr.qty,qr.fitted,qr.default,qr.coef,%
-qr.X,qr.R,qr.Q,pushBackLength,pushBack,%
-psigamma,provideDimnames,prop.table,proc.time,print.warnings,%
-print.table,print.summaryDefault,print.summary.table,print.srcref,print.srcfile,%
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/distr -r 1088
More information about the Distr-commits
mailing list