[Distr-commits] r896 - in pkg/distrDoc: . R inst man vignettes
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Fri Sep 6 21:51:19 CEST 2013
Author: ruckdeschel
Date: 2013-09-06 21:51:19 +0200 (Fri, 06 Sep 2013)
New Revision: 896
Modified:
pkg/distrDoc/DESCRIPTION
pkg/distrDoc/NAMESPACE
pkg/distrDoc/R/distrDoc.R
pkg/distrDoc/inst/NEWS
pkg/distrDoc/man/0distrDoc-package.Rd
pkg/distrDoc/vignettes/distr.Rnw
Log:
built new version distrDoc_2.4.1.tar.gz in trunk
Modified: pkg/distrDoc/DESCRIPTION
===================================================================
--- pkg/distrDoc/DESCRIPTION 2013-09-06 19:35:14 UTC (rev 895)
+++ pkg/distrDoc/DESCRIPTION 2013-09-06 19:51:19 UTC (rev 896)
@@ -1,15 +1,12 @@
Package: distrDoc
Version: 2.4.1
-Date: 2013-02-08
-Title: Documentation for packages distr, distrEx, distrSim, distrTEst, distrTeach, distrMod,
- and distrEllipse
-Description: provides documentation in form of a common vignette to packages distr, distrEx,
- distrMod, distrSim, distrTEst, distrTeach, and distrEllipse
+Date: 2013-09-06
+Title: Documentation for packages distr, distrEx, distrSim, distrTEst, distrTeach, distrMod, and distrEllipse
+Description: provides documentation in form of a common vignette to packages distr, distrEx, distrMod, distrSim, distrTEst, distrTeach, and distrEllipse
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas Stabla
Maintainer: Peter Ruckdeschel <Peter.Ruckdeschel at itwm.fraunhofer.de>
-Depends: R(>= 2.14.0), tools, startupmsg, distr(>= 2.2.0), distrEx(>= 2.2.0), distrSim(>=
- 2.2.0), distrTEst(>= 2.2.0), distrTeach(>= 2.2.0), RandVar(>= 0.7), distrMod(>= 2.2.0),
- MASS, methods
+Depends: R(>= 2.6.0), tools, distr(>= 2.2.0), distrEx(>= 2.2.0), distrSim(>= 2.2.0), distrTEst(>= 2.2.0), distrTeach(>= 2.2.0), RandVar(>= 0.7),
+ distrMod(>= 2.2.0), MASS, methods
Suggests: Biobase, SweaveListingUtils
ByteCompile: yes
Encoding: latin1
@@ -17,4 +14,4 @@
URL: http://distr.r-forge.r-project.org/
LastChangedDate: {$LastChangedDate$}
LastChangedRevision: {$LastChangedRevision$}
-SVNRevision: 879
+SVNRevision: 896
Modified: pkg/distrDoc/NAMESPACE
===================================================================
--- pkg/distrDoc/NAMESPACE 2013-09-06 19:35:14 UTC (rev 895)
+++ pkg/distrDoc/NAMESPACE 2013-09-06 19:51:19 UTC (rev 896)
@@ -1,10 +1,85 @@
import("methods")
-import("startupmsg")
import("MASS")
import("distr")
import("distrEx")
-import("distrSim")
import("RandVar")
-import("distrMod")
-import("distrTeach")
-import("distrTEst")
+
+importFrom("stats4","profile")
+exportClasses("MatrixorFunction", "OptionalNumericOrMatrixOrCall",
+ "OptionalDistrListOrCall", "OptionalNumericOrMatrix",
+ "ShowDetails",
+ "FunctionSymmetry", "NonSymmetric", "EvenSymmetric", "OddSymmetric",
+ "FunSymmList",
+ "ParamFamParameter",
+ "ProbFamily", "ParamFamily", "L2ParamFamily")
+exportClasses("RiskType",
+ "asRisk", "asCov", "trAsCov", "asHampel", "asBias", "asGRisk",
+ "asMSE", "asUnOvShoot",
+ "fiRisk", "fiCov", "trFiCov", "fiHampel", "fiMSE", "fiBias",
+ "fiUnOvShoot")
+exportClasses("BiasType", "onesidedBias", "asymmetricBias", "symmetricBias")
+exportClasses("asSemivar", "asRiskwithBias")
+exportClasses("L2GroupParamFamily", "L2LocationFamily",
+ "L2ScaleFamily", "L2LocationScaleFamily")
+exportClasses("L2LocationScaleUnion")
+exportClasses("L2ScaleShapeUnion", "L2ScaleUnion")
+exportClasses("ParamWithScaleFamParameter", "ParamWithShapeFamParameter",
+ "ParamWithScaleAndShapeFamParameter")
+exportClasses("BinomFamily","PoisFamily", "NormLocationFamily",
+ "NormScaleFamily", "ExpScaleFamily",
+ "LnormScaleFamily", "GammaFamily", "BetaFamily", "NormLocationScaleFamily",
+ "CauchyLocationScaleFamily")
+exportClasses("NormType", "QFNorm", "InfoNorm", "SelfNorm")
+exportClasses("Estimate", "MCEstimate")
+exportClasses("Confint")
+exportMethods("distrSymm")
+exportMethods("distribution", "props", "props<-", "addProp<-", "main", "main<-",
+ "nuisance", "nuisance<-", "trafo", "trafo<-", "trafo.fct",
+ "fixed", "fixed<-", "modifyParam",
+ "dimension", "show", "print", "plot", "param", "E", "name",
+ "L2deriv", "L2derivSymm", "L2derivDistr", "L2derivDistrSymm",
+ "FisherInfo", "checkL2deriv", "fam.call")
+exportMethods("completecases")
+exportMethods("bound", "width")
+exportMethods("nu", "name", "sign", "nu<-", "name<-", "sign<-", "biastype", "biastype<-")
+exportMethods("existsPIC")
+exportMethods("modifyModel")
+exportMethods("norm", "QuadForm<-", "QuadForm", "fct",
+ "fct<-", "normtype", "normtype<-")
+exportMethods("r", "d", "p", "q",
+ "estimate", "estimate.call", "samplesize.estimate", "call.estimate",
+ "name.estimate", "trafo.estimate", "nuisance.estimate",
+ "fixed.estimate", "Infos", "Infos<-", "addInfo<-",
+ "criterion", "criterion<-", "criterion.fct", "method",
+ "samplesize", "asvar", "asvar<-", "optimwarn",
+ "withPosRestr", "withPosRestr<-")
+exportMethods("untransformed.estimate", "untransformed.asvar")
+exportMethods("confint")
+exportMethods("validParameter")
+exportMethods("startPar", "makeOKPar")
+exportMethods("scaleshapename", "scalename", "LogDeriv")
+exportMethods("coerce", "profile", "locscalename", "scaleshapename<-")
+exportMethods("mleCalc", "mceCalc")
+exportMethods("qqplot")
+export("distrModMASK")
+export("trafoEst")
+export("distrModOptions", "distrModoptions", "getdistrModOption",
+ "Estimator", "MCEstimator", "MLEstimator", "MDEstimator")
+export("NonSymmetric", "EvenSymmetric", "OddSymmetric", "FunSymmList")
+export("ParamFamParameter", "ParamFamily", "L2ParamFamily",
+ "BinomFamily", "PoisFamily", "NbinomFamily", "NormLocationFamily",
+ "NormScaleFamily", "ExpScaleFamily",
+ "LnormScaleFamily", "GammaFamily", "BetaFamily", "NormLocationScaleFamily",
+ "CauchyLocationScaleFamily", "NbinomwithSizeFamily", "NbinomMeanSizeFamily")
+export("asCov", "trAsCov", "asHampel", "asBias", "asMSE", "asUnOvShoot",
+ "fiCov", "trFiCov", "fiHampel", "fiMSE", "fiBias", "fiUnOvShoot")
+export("positiveBias", "negativeBias", "symmetricBias",
+ "asymmetricBias", "asSemivar")
+export("isKerAinKerB")
+export("L2LocationFamily", "L2ScaleFamily", "L2LocationScaleFamily")
+export("EuclideanNorm", "QuadFormNorm")
+export("NormType", "QFNorm", "InfoNorm", "SelfNorm")
+export("NormScaleUnknownLocationFamily", "NormLocationUnknownScaleFamily")
+export("L2LocationUnknownScaleFamily", "L2ScaleUnknownLocationFamily")
+export("meRes", "get.criterion.fct")
+export("addAlphTrsp2col")
Modified: pkg/distrDoc/R/distrDoc.R
===================================================================
--- pkg/distrDoc/R/distrDoc.R 2013-09-06 19:35:14 UTC (rev 895)
+++ pkg/distrDoc/R/distrDoc.R 2013-09-06 19:51:19 UTC (rev 896)
@@ -1,5 +1,5 @@
.onLoad <- function(lib, pkg) { # extended 03-28-06: P.R.
- # require("methods", character = TRUE, quietly = TRUE)
+# require("methods", character = TRUE, quietly = TRUE)
}
.onAttach <- function(libname, pkgname)
Modified: pkg/distrDoc/inst/NEWS
===================================================================
--- pkg/distrDoc/inst/NEWS 2013-09-06 19:35:14 UTC (rev 895)
+++ pkg/distrDoc/inst/NEWS 2013-09-06 19:51:19 UTC (rev 896)
@@ -29,7 +29,6 @@
+ shrinking inst/doc in order to prevent B. Ripley from archiving distrDoc
+ tried to get the imports in NAMESPACE files in the right order
+ For some strange reason, examle CIex in vignette threw an error; have changed seed; now it works again.
-+ deleted no longer needed chm folders
BUGFIXES:
Modified: pkg/distrDoc/man/0distrDoc-package.Rd
===================================================================
--- pkg/distrDoc/man/0distrDoc-package.Rd 2013-09-06 19:35:14 UTC (rev 895)
+++ pkg/distrDoc/man/0distrDoc-package.Rd 2013-09-06 19:51:19 UTC (rev 896)
@@ -14,14 +14,14 @@
\details{
\tabular{ll}{
Package: \tab distrDoc \cr
-Version: \tab 2.4.1 \cr
-Date: \tab 2013-02-08 \cr
+Version: \tab 2.4 \cr
+Date: \tab 2013-01-09 \cr
Depends: \tab R(>= 2.6.0), tools, distr(>= 2.2.0), startupmsg, distrEx(>= 2.2.0), distrSim(>= 2.2.0), distrTEst(>= 2.2.0), distrTeach(>=
2.2.0), RandVar(>= 0.7), distrMod(>= 2.2.0), MASS, methods \cr
LazyLoad: \tab yes \cr
License: \tab LGPL-3 \cr
URL: \tab http://distr.r-forge.r-project.org/\cr
-SVNRevision: \tab 879 \cr
+SVNRevision: \tab 834 \cr
}}
Modified: pkg/distrDoc/vignettes/distr.Rnw
===================================================================
--- pkg/distrDoc/vignettes/distr.Rnw 2013-09-06 19:35:14 UTC (rev 895)
+++ pkg/distrDoc/vignettes/distr.Rnw 2013-09-06 19:51:19 UTC (rev 896)
@@ -1,5 +1,5 @@
%\VignetteIndexEntry{distr - manual}
-%\VignetteDepends{startupmsg,distr}
+%\VignetteDepends{distr}
%\VignetteKeyword{probability distribution,simulation,estimation}
%\VignettePackage{distr}
%
@@ -9,8 +9,8 @@
% Version control information:
\svnidlong
{$HeadURL: svn+ssh://ruckdeschel@svn.r-forge.r-project.org/svnroot/distr/branches/distr-2.4/pkg/distrDoc/vignettes/distr.Rnw $}
-{$LastChangedDate: 2012-05-22 14:40:14 +0200 (Di, 22 Mai 2012) $}
-{$LastChangedRevision: 816 $}
+{$LastChangedDate: 2013-09-06 21:35:14 +0200 (Fr, 06 Sep 2013) $}
+{$LastChangedRevision: 895 $}
{$LastChangedBy: ruckdeschel $}
%\svnid{$Id: example_main.tex 146 2008-12-03 13:29:19Z martin $}
% Don't forget to set the svn property 'svn:keywords' to
@@ -170,9 +170,6 @@
\pkg{distrTeach} to embody illustrations for basic stats courses using
our distribution classes.
-From version 2.4 on, we have moved support for extreme value distributions,
-as well as for certain scale-shape distributions to the new package
-\pkg{RobExtremes}. This concerns the Gumbel, Weibull, Pareto distributions.
%\noindent The latter two of them require package \pkg{setRNG} by
%\href{mailto:pgilbert at bank-banque-canada.ca}{Paul Gilbert}
%to be installed from \href{http://cran.r-project.org/mirrors.html}{\tt CRAN}.
@@ -267,8 +264,7 @@
distributions as multivariate distributions, times series distributions,
conditional distributions. As an exercise, the reader is encouraged to implement
extrem value distributions from the package \pkg{evd}\footnote{a solution to
-this ``homework'' may be found in the sources to \pkg{distrEx},
-resp.\ from version 2.4 on, in the sources to \pkg{RobExtremes}}. The largest
+this ``homework'' may be found in the sources to \pkg{distrEx}}. The largest
effort will in fact be the documentation\ldots\\
We also wanted to preserve naming and notation from {\sf R}-\pkg{stats}
as far as possible so that any programmer used to {\tt S} could quickly
@@ -571,9 +567,9 @@
\subsubsection{Classes for multivariate distributions and for conditional
distributions}
-In \pkg{distrEx}, %besides providing particular distribution classes
-%for the Gumbel distribution (see \code{?Gumbel}) and the Pareto
-%distribution (see \code{?Pareto}), -> moved to RobExtremes
+In \pkg{distrEx}, besides providing particular distribution classes
+for the Gumbel distribution (see \code{?Gumbel}) and the Pareto
+distribution (see \code{?Pareto}),
we provide the following classes for handling multivariate
distributions:
@@ -1733,10 +1729,8 @@
\paragraph{exact evaluation}
is available for \code{X} of class \code{Arcsine}, \code{Beta} (for noncentrality $0$),
\code{Binom}, \code{Cauchy}, \code{Chisq}, \code{Dirac}, \code{Exp}, \code{Fd},
-\code{Gammad}, \code{Geom}, %\code{Gumbel}, -> moved to RobExtremes
-\code{Hyper}, \code{Logis}, \code{Lnorm},
-\code{Nbinom}, \code{Norm}, %\code{Pareto}, -> moved to RobExtremes
-\code{Pois}, \code{Td}, \code{Unif}. % \code{Weibull} -> moved to RobExtremes
+\code{Gammad}, \code{Geom}, \code{Gumbel}, \code{Hyper}, \code{Logis}, \code{Lnorm},
+\code{Nbinom}, \code{Norm}, \code{Pareto}, \code{Pois}, \code{Td}, \code{Unif}, \code{Weibull}.
\paragraph{examples} $ \mbox{ }$\newline
%<<expectationPrep, eval = TRUE, echo=FALSE>>=
%SweaveListingOptions("inSweave"=TRUE)
@@ -1848,11 +1842,8 @@
function and no condition argument is given:
this is available for \code{X} of class \code{Arcsine}, \code{Beta} (for noncentrality $0$),
\code{Binom}, \code{Cauchy}, \code{Chisq}, \code{Dirac}, \code{Exp}, \code{Fd},
-\code{Gammad}, \code{Geom}, %\code{Gumbel}, -> moved to RobExtremes
-\code{Hyper}, \code{Logis}, \code{Lnorm},
-\code{Nbinom}, \code{Norm}, % \code{Pareto}, -> moved to RobExtremes
-\code{Pois}, \code{Unif}, \code{Td}.
-%, \code{Weibull}. -> moved to RobExtremes
+\code{Gammad}, \code{Geom}, \code{Gumbel}, \code{Hyper}, \code{Logis}, \code{Lnorm},
+\code{Nbinom}, \code{Norm}, \code{Pareto}, \code{Pois}, \code{Unif}, \code{Td}, \code{Weibull}.
\subsubsection{Further functionals}
By the same techniques we provide the following functionals for univariate
distributions:
@@ -2739,14 +2730,13 @@
\subsection{Dependencies}
In package \pkg{distr}, from version 2.0, we make use of \code{D1ss} from
\href{mailto:maechler at stat.math.ethz.ch}{Martin M\"achler's} package \pkg{sfsmisc}.
-In package \pkg{distrEx}, up to version 2.4, we needed
+In package \pkg{distrEx}, we need
\href{mailto:alec_stephenson at hotmail.com}{Alec Stephenson's} package \pkg{evd}
for the extreme value distributions implemented therein, as well as
\href{mailto:Vincent.Goulet at act.ulaval.ca}{Vincent Goulet}'s and Mathieu Pigeon's
package \pkg{actuar} for the (single parameter) Pareto distribution (from
\pkg{distrEx} version 2.1 on) which has been ported to our framework by
-\href{mailto:nhorbenko at kpmg.de}{Nataliya Horbenko}.
-From version 2.4 on, this infrastructure has moved to package \pkg{RobExtremes}.
+\href{mailto:Nataliya.Horbenko at itwm.fraunhofer.de}{Nataliya Horbenko}.
In package \pkg{distrSim}, and conseqently also in package \pkg{distrTEst} we
use \href{mailto:pgilbert at bank-banque-canada.ca}{Paul Gilbert's}
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