[Distr-commits] r734 - in pkg/SweaveListingUtils: . tests/Examples
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon Sep 12 21:16:52 CEST 2011
Author: stamats
Date: 2011-09-12 21:16:51 +0200 (Mon, 12 Sep 2011)
New Revision: 734
Modified:
pkg/SweaveListingUtils/.Rbuildignore
pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save
Log:
update from R 2.12.1 to R 2.13.1, added new line to .Rbuildignore
Modified: pkg/SweaveListingUtils/.Rbuildignore
===================================================================
--- pkg/SweaveListingUtils/.Rbuildignore 2011-09-12 18:55:11 UTC (rev 733)
+++ pkg/SweaveListingUtils/.Rbuildignore 2011-09-12 19:16:51 UTC (rev 734)
@@ -1 +1 @@
-^.*\.svn.+
\ No newline at end of file
+^.*\.svn.+
Modified: pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save
===================================================================
--- pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save 2011-09-12 18:55:11 UTC (rev 733)
+++ pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save 2011-09-12 19:16:51 UTC (rev 734)
@@ -1,5 +1,5 @@
-R version 2.12.1 Patched (2011-01-03 r53910)
+R version 2.13.1 Patched (2011-09-08 r56992)
Copyright (C) 2011 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: x86_64-unknown-linux-gnu (64-bit)
@@ -29,7 +29,8 @@
:startupmsg> NEWS("startupmsg")
:SweaveListingUtils> Utilities for Sweave together with
-:SweaveListingUtils> TeX listings package (version 0.5)
+:SweaveListingUtils> TeX listings package (version
+:SweaveListingUtils> 0.5.2)
:SweaveListingUtils>
:SweaveListingUtils> Some functions from package 'base'
:SweaveListingUtils> are intentionally masked ---see
@@ -420,7 +421,7 @@
\def\Code#1{{\tt\color{Rcolor} #1}}
\def\file#1{{\tt #1}}
\def\pkg#1{{\tt "#1"}}
-\newcommand{\pkgversion}{{\tt 2.3}}
+\newcommand{\pkgversion}{{\tt 2.3.3}}
%------------------------------------------------------------------------------%
Warning in kws[idxRec] <- rep(getSweaveListingOption("Recomd.Keywordstyle"), :
number of items to replace is not a multiple of replacement length
@@ -475,47 +476,47 @@
plot.lm,plot.ecdf,plot.density,plot.TukeyHSD,plclust,%
pbirthday,pairwise.wilcox.test,pairwise.table,pairwise.t.test,pairwise.prop.test,%
pacf,p.adjust.methods,p.adjust,order.dendrogram,oneway.test,%
-numericDeriv,nls.control,nls,nlminb,naresid,%
-naprint,napredict,na.pass,na.omit,na.fail,%
-na.exclude,na.contiguous,na.action,mood.test,monthplot,%
-model.weights,model.tables,model.response,model.offset,model.matrix.lm,%
-model.matrix.default,model.matrix,model.frame.lm,model.frame.glm,model.frame.default,%
-model.frame.aovlist,model.frame,model.extract,medpolish,median.default,%
-mcnemar.test,mauchly.test,mauchley.test,mantelhaen.test,manova,%
-makepredictcall,makeARIMA,make.link,ls.print,ls.diag,%
-logLik,loess.smooth,loess.control,loess,loadings,%
-lm.wfit.null,lm.wfit,lm.influence,lm.fit.null,lm.fit,%
-lines.ts,line,lag.plot,lag,ksmooth,%
-ks.test,kruskal.test,knots,kmeans,kernel,%
-kernapply,isoreg,is.tskernel,is.ts,is.stepfun,%
-is.mts,is.leaf,is.empty.model,inverse.gaussian,interaction.plot,%
-integrate,influence.measures,heatmap,hclust,hatvalues.lm,%
-hatvalues,glm.fit.null,glm.fit,glm.control,get_all_vars,%
-getInitial,friedman.test,fligner.test,fitted.values,fisher.test,%
-filter,factor.scope,factanal,expand.model.frame,estVar,%
-embed,eff.aovlist,ecdf,dummy.coef,drop.terms,%
-drop.scope,dmultinom,dist,diffinv,diff.ts,%
-dfbeta,df.residual,df.kernel,deriv3.formula,deriv3.default,%
-deriv3,deriv.formula,deriv.default,density.default,dendrapply,%
-delete.response,decompose,cutree,cpgram,cov2cor,%
-cov.wt,cor.test,cophenetic,cooks.distance,contrasts<-,%
-contr.treatment,contr.sum,contr.poly,contr.helmert,contr.SAS,%
-constrOptim,confint.default,confint,complete.cases,cmdscale,%
-clearNames,chisq.test,ccf,case.names,cancor,%
-bw.ucv,bw.nrd0,bw.nrd,bw.bcv,bw.SJ,%
-biplot,binom.test,bartlett.test,bandwidth.kernel,asOneSidedFormula,%
-as.ts,as.stepfun,as.hclust,as.formula,as.dist,%
-as.dendrogram,arima0.diag,arima0,arima.sim,arima,%
-ar.yw,ar.ols,ar.mle,ar.burg,ar,%
-ansari.test,anovalist.lm,anova.mlm,anova.lmlist,anova.lm,%
-anova.glmlist,anova.glm,aggregate.ts,aggregate.default,aggregate.data.frame,%
-addmargins,add.scope,acf2AR,acf,TukeyHSD.aov,%
-TukeyHSD,StructTS,SSweibull,SSmicmen,SSlogis,%
-SSgompertz,SSfpl,SSfol,SSbiexp,SSasympOrig,%
-SSasympOff,SSasymp,SSD,PP.test,NLSstRtAsymptote,%
-NLSstLfAsymptote,NLSstClosestX,NLSstAsymptotic,KalmanSmooth,KalmanRun,%
-KalmanLike,KalmanForecast,HoltWinters,Box.test,ARMAtoMA,%
-ARMAacf,AIC%
+numericDeriv,nobs,nls.control,nls,nlminb,%
+naresid,naprint,napredict,na.pass,na.omit,%
+na.fail,na.exclude,na.contiguous,na.action,mood.test,%
+monthplot,model.weights,model.tables,model.response,model.offset,%
+model.matrix.lm,model.matrix.default,model.matrix,model.frame.lm,model.frame.glm,%
+model.frame.default,model.frame.aovlist,model.frame,model.extract,medpolish,%
+median.default,mcnemar.test,mauchly.test,mauchley.test,mantelhaen.test,%
+manova,makepredictcall,makeARIMA,make.link,ls.print,%
+ls.diag,logLik,loess.smooth,loess.control,loess,%
+loadings,lm.wfit.null,lm.wfit,lm.influence,lm.fit.null,%
+lm.fit,lines.ts,line,lag.plot,lag,%
+ksmooth,ks.test,kruskal.test,knots,kmeans,%
+kernel,kernapply,isoreg,is.tskernel,is.ts,%
+is.stepfun,is.mts,is.leaf,is.empty.model,inverse.gaussian,%
+interaction.plot,integrate,influence.measures,heatmap,hclust,%
+hatvalues.lm,hatvalues,glm.fit.null,glm.fit,glm.control,%
+get_all_vars,getInitial,friedman.test,fligner.test,fitted.values,%
+fisher.test,filter,factor.scope,factanal,expand.model.frame,%
+estVar,embed,eff.aovlist,ecdf,dummy.coef,%
+drop.terms,drop.scope,dmultinom,dist,diffinv,%
+diff.ts,dfbeta,df.residual,df.kernel,deriv3.formula,%
+deriv3.default,deriv3,deriv.formula,deriv.default,density.default,%
+dendrapply,delete.response,decompose,cutree,cpgram,%
+cov2cor,cov.wt,cor.test,cophenetic,cooks.distance,%
+contrasts<-,contr.treatment,contr.sum,contr.poly,contr.helmert,%
+contr.SAS,constrOptim,confint.default,confint,complete.cases,%
+cmdscale,clearNames,chisq.test,ccf,case.names,%
+cancor,bw.ucv,bw.nrd0,bw.nrd,bw.bcv,%
+bw.SJ,biplot,binom.test,bartlett.test,bandwidth.kernel,%
+asOneSidedFormula,as.ts,as.stepfun,as.hclust,as.formula,%
+as.dist,as.dendrogram,arima0.diag,arima0,arima.sim,%
+arima,ar.yw,ar.ols,ar.mle,ar.burg,%
+ar,ansari.test,anovalist.lm,anova.mlm,anova.lmlist,%
+anova.lm,anova.glmlist,anova.glm,aggregate.ts,aggregate.default,%
+aggregate.data.frame,addmargins,add.scope,acf2AR,acf,%
+TukeyHSD.aov,TukeyHSD,StructTS,SSweibull,SSmicmen,%
+SSlogis,SSgompertz,SSfpl,SSfol,SSbiexp,%
+SSasympOrig,SSasympOff,SSasymp,SSD,PP.test,%
+NLSstRtAsymptote,NLSstLfAsymptote,NLSstClosestX,NLSstAsymptotic,KalmanSmooth,%
+KalmanRun,KalmanLike,KalmanForecast,HoltWinters,Box.test,%
+BIC,ARMAtoMA,ARMAacf,AIC%
},%
keywordstyle={[4]{\bf\color{RRecomdcolor}}},%
%
@@ -567,22 +568,23 @@
txtProgressBar,toLatex,toBibtex,timestamp,tar,%
tail.matrix,tail,summaryRprof,strOptions,str,%
stack,setTxtProgressBar,setRepositories,setBreakpoint,sessionInfo,%
-select.list,savehistory,rtags,remove.packages,relist,%
-recover,readCitationFile,read.table,read.socket,read.fwf,%
-read.fortran,read.delim2,read.delim,read.csv2,read.csv,%
-read.DIF,rc.status,rc.settings,rc.options,rc.getOption,%
-promptPackage,promptData,personList,person,packageVersion,%
-packageStatus,packageDescription,package.skeleton,package.contents,old.packages,%
-object.size,nsl,normalizePath,news,new.packages,%
+select.list,savehistory,rtags,removeSource,remove.packages,%
+relist,recover,readCitationFile,read.table,read.socket,%
+read.fwf,read.fortran,read.delim2,read.delim,read.csv2,%
+read.csv,read.DIF,rc.status,rc.settings,rc.options,%
+rc.getOption,promptPackage,promptData,personList,person,%
+packageVersion,packageStatus,packageDescription,package.skeleton,package.contents,%
+old.packages,object.size,nsl,news,new.packages,%
modifyList,mirror2html,memory.size,memory.limit,makeRweaveLatexCodeRunner,%
make.socket,make.packages.html,maintainer,lsf.str,ls.str,%
localeToCharset,loadhistory,limitedLabels,is.relistable,installed.packages,%
install.packages,history,help.start,help.search,help.request,%
-head.matrix,head,glob2rx,getTxtProgressBar,getS3method,%
-getFromNamespace,getCRANmirrors,getAnywhere,formatUL,formatOL,%
-flush.console,fixInNamespace,findLineNum,file_test,file.edit,%
-dump.frames,download.packages,download.file,de.setup,de.restore,%
-de.ncols,data.entry,count.fields,contrib.url,compareVersion,%
+head.matrix,head,glob2rx,getTxtProgressBar,getSrcref,%
+getSrcLocation,getSrcFilename,getSrcDirectory,getS3method,getFromNamespace,%
+getCRANmirrors,getAnywhere,formatUL,formatOL,flush.console,%
+fixInNamespace,findLineNum,file_test,file.edit,dump.frames,%
+download.packages,download.file,de.setup,de.restore,de.ncols,%
+data.entry,create.post,count.fields,contrib.url,compareVersion,%
combn,close.socket,citation,citHeader,citFooter,%
citEntry,chooseCRANmirror,chooseBioCmirror,checkCRAN,capture.output,%
bug.report,browseVignettes,browseURL,browseEnv,bibentry,%
@@ -702,122 +704,125 @@
split<-,split.default,split.data.frame,split.POSIXct,split.Date,%
source.url,sort.list,sort.int,sort.default,sort.POSIXlt,%
solve.qr,solve.default,socketSelect,socketConnection,slice.index,%
-sink.number,simpleWarning,simpleMessage,simpleError,simpleCondition,%
-signalCondition,showConnections,shQuote,setTimeLimit,setSessionTimeLimit,%
-setNamespaceInfo,setHook,setCConverterStatus,set.seed,serialize,%
-seq_len,seq_along,seq.int,seq.default,seq.POSIXt,%
-seq.Date,seek.connection,seek,scan.url,scale.default,%
-save.image,sample.int,sQuote,rowsum.default,rowsum.data.frame,%
-rownames<-,rowSums,rowMeans,row.names<-.default,row.names<-.data.frame,%
-row.names<-,row.names.default,row.names.data.frame,row.names,round.POSIXt,%
-round.Date,rev.default,retracemem,restartFormals,restartDescription,%
-replicate,rep.numeric_version,rep.int,rep.factor,rep.POSIXlt,%
-rep.POSIXct,rep.Date,removeTaskCallback,removeCConverter,registerS3methods,%
-registerS3method,reg.finalizer,readRenviron,readLines,readChar,%
-readBin,read.table.url,read.dcf,rcond,rbind.data.frame,%
-rawToChar,rawToBits,rawShift,rawConnectionValue,rawConnection,%
-raw,rapply,range.default,quarters.POSIXt,quarters.Date,%
-quarters,qr.solve,qr.resid,qr.qy,qr.qty,%
-qr.fitted,qr.default,qr.coef,qr.X,qr.R,%
-qr.Q,pushBackLength,pushBack,psigamma,prop.table,%
-proc.time,printNoClass,print.warnings,print.table,print.summaryDefault,%
-print.summary.table,print.srcref,print.srcfile,print.simple.list,print.rle,%
-print.restart,print.proc_time,print.packageInfo,print.octmode,print.numeric_version,%
-print.noquote,print.listof,print.libraryIQR,print.hexmode,print.function,%
-print.factor,print.difftime,print.default,print.data.frame,print.connection,%
-print.condition,print.by,print.POSIXlt,print.POSIXct,print.NativeRoutineList,%
-print.Date,print.DLLRegisteredRoutines,print.DLLInfoList,print.DLLInfo,print.AsIs,%
-prettyNum,pretty.default,pos.to.env,pmin.int,pmax.int,%
-pipe,pi,path.expand,parseNamespaceFile,parse.dcf,%
-parent.frame,parent.env<-,parent.env,package_version,packageStartupMessage,%
-packageHasNamespace,packageEvent,package.description,packBits,open.srcfilecopy,%
-open.srcfile,open.connection,open,on.exit,oldClass<-,%
-oldClass,nzchar,numeric_version,norm,ngettext,%
+sink.number,simplify2array,simpleWarning,simpleMessage,simpleError,%
+simpleCondition,signalCondition,showConnections,shQuote,setTimeLimit,%
+setSessionTimeLimit,setNamespaceInfo,setHook,setCConverterStatus,set.seed,%
+serialize,seq_len,seq_along,seq.int,seq.default,%
+seq.POSIXt,seq.Date,seek.connection,seek,scan.url,%
+scale.default,saveRDS,save.image,sample.int,sQuote,%
+rowsum.default,rowsum.data.frame,rownames<-,rowSums,rowMeans,%
+row.names<-.default,row.names<-.data.frame,row.names<-,row.names.default,row.names.data.frame,%
+row.names,round.POSIXt,round.Date,rev.default,retracemem,%
+restartFormals,restartDescription,replicate,rep.numeric_version,rep.int,%
+rep.factor,rep.POSIXlt,rep.POSIXct,rep.Date,removeTaskCallback,%
+removeCConverter,registerS3methods,registerS3method,reg.finalizer,readRenviron,%
+readRDS,readLines,readChar,readBin,read.table.url,%
+read.dcf,rcond,rbind.data.frame,rawToChar,rawToBits,%
+rawShift,rawConnectionValue,rawConnection,raw,rapply,%
+range.default,quarters.POSIXt,quarters.Date,quarters,qr.solve,%
+qr.resid,qr.qy,qr.qty,qr.fitted,qr.default,%
+qr.coef,qr.X,qr.R,qr.Q,pushBackLength,%
+pushBack,psigamma,prop.table,proc.time,printNoClass,%
+print.warnings,print.table,print.summaryDefault,print.summary.table,print.srcref,%
+print.srcfile,print.simple.list,print.rle,print.restart,print.proc_time,%
+print.packageInfo,print.octmode,print.numeric_version,print.noquote,print.listof,%
+print.libraryIQR,print.hexmode,print.function,print.factor,print.difftime,%
+print.default,print.data.frame,print.connection,print.condition,print.by,%
+print.POSIXlt,print.POSIXct,print.NativeRoutineList,print.Date,print.DLLRegisteredRoutines,%
+print.DLLInfoList,print.DLLInfo,print.AsIs,prettyNum,pretty.default,%
+pos.to.env,pmin.int,pmax.int,pipe,pi,%
+path.package,path.expand,parseNamespaceFile,parse.dcf,parent.frame,%
+parent.env<-,parent.env,package_version,packageStartupMessage,packageHasNamespace,%
+packageEvent,package.description,packBits,open.srcfilecopy,open.srcfile,%
+open.connection,open,on.exit,oldClass<-,oldClass,%
+nzchar,numeric_version,normalizePath,norm,ngettext,%
new.env,namespaceImportMethods,namespaceImportFrom,namespaceImportClasses,namespaceImport,%
-namespaceExport,names<-,mostattributes<-,months.POSIXt,months.Date,%
-months,month.name,month.abb,mode<-,mget,%
-message,merge.default,merge.data.frame,memory.profile,memDecompress,%
-memCompress,mem.limits,mean.difftime,mean.default,mean.data.frame,%
-mean.POSIXlt,mean.POSIXct,mean.Date,max.col,match.fun,%
-match.call,match.arg,mat.or.vec,margin.table,mapply,%
-manglePackageName,makeActiveBinding,make.unique,make.names,lower.tri,%
-logb,lockEnvironment,lockBinding,loadingNamespaceInfo,loadedNamespaces,%
-loadURL,loadNamespace,list2env,list.files,library.dynam.unload,%
-library.dynam,lfactorial,levels<-.factor,levels<-,levels.default,%
-letters,length<-.factor,length<-,length.POSIXlt,lazyLoadDBfetch,%
-lazyLoad,labels.default,l10n_info,kappa.tri,kappa.qr,%
-kappa.lm,kappa.default,julian.POSIXt,julian.Date,julian,%
-isdebugged,isatty,isTRUE,isSymmetric.matrix,isSymmetric,%
-isSeekable,isS4,isRestart,isOpen,isNamespace,%
-isIncomplete,isBaseNamespace,is.vector,is.unsorted,is.table,%
-is.symbol,is.single,is.recursive,is.real,is.raw,%
-is.qr,is.primitive,is.pairlist,is.package_version,is.ordered,%
-is.object,is.numeric_version,is.numeric.difftime,is.numeric.POSIXt,is.numeric.Date,%
-is.numeric,is.null,is.nan,is.name,is.na<-.factor,%
-is.na<-.default,is.na<-,is.na.numeric_version,is.na.data.frame,is.na.POSIXlt,%
-is.na,is.matrix,is.logical,is.loaded,is.list,%
-is.language,is.integer,is.infinite,is.function,is.finite,%
-is.factor,is.expression,is.environment,is.element,is.double,%
-is.data.frame,is.complex,is.character,is.call,is.atomic,%
-is.array,is.R,invokeRestartInteractively,invokeRestart,inverse.rle,%
-intToUtf8,intToBits,importIntoEnv,identity,identical,%
-icuSetCollate,iconvlist,iconv,gzfile,gzcon,%
-grepl,gregexpr,gettextf,gettext,getTaskCallbackNames,%
+namespaceExport,names<-.POSIXlt,names<-,names.POSIXlt,mostattributes<-,%
+months.POSIXt,months.Date,months,month.name,month.abb,%
+mode<-,mget,message,merge.default,merge.data.frame,%
+memory.profile,memDecompress,memCompress,mem.limits,mean.difftime,%
+mean.default,mean.data.frame,mean.POSIXlt,mean.POSIXct,mean.Date,%
+max.col,match.fun,match.call,match.arg,mat.or.vec,%
+margin.table,mapply,manglePackageName,makeActiveBinding,make.unique,%
+make.names,lower.tri,logb,lockEnvironment,lockBinding,%
+loadingNamespaceInfo,loadedNamespaces,loadURL,loadNamespace,list2env,%
+list.files,list.dirs,library.dynam.unload,library.dynam,lfactorial,%
+levels<-.factor,levels<-,levels.default,letters,length<-.factor,%
+length<-,length.POSIXlt,lazyLoadDBfetch,lazyLoadDBexec,lazyLoad,%
+labels.default,l10n_info,kappa.tri,kappa.qr,kappa.lm,%
+kappa.default,julian.POSIXt,julian.Date,julian,isdebugged,%
+isatty,isTRUE,isSymmetric.matrix,isSymmetric,isSeekable,%
+isS4,isRestart,isOpen,isNamespace,isIncomplete,%
+isBaseNamespace,is.vector,is.unsorted,is.table,is.symbol,%
+is.single,is.recursive,is.real,is.raw,is.qr,%
+is.primitive,is.pairlist,is.package_version,is.ordered,is.object,%
+is.numeric_version,is.numeric.difftime,is.numeric.POSIXt,is.numeric.Date,is.numeric,%
+is.null,is.nan,is.name,is.na<-.factor,is.na<-.default,%
+is.na<-,is.na.numeric_version,is.na.data.frame,is.na.POSIXlt,is.na,%
+is.matrix,is.logical,is.loaded,is.list,is.language,%
+is.integer,is.infinite,is.function,is.finite,is.factor,%
+is.expression,is.environment,is.element,is.double,is.data.frame,%
+is.complex,is.character,is.call,is.atomic,is.array,%
+is.R,invokeRestartInteractively,invokeRestart,inverse.rle,intToUtf8,%
+intToBits,importIntoEnv,identity,identical,icuSetCollate,%
+iconvlist,iconv,gzfile,gzcon,grepl,%
+grepRaw,gregexpr,gettextf,gettext,getTaskCallbackNames,%
getSrcLines,getRversion,getNumCConverters,getNativeSymbolInfo,getNamespaceVersion,%
getNamespaceUsers,getNamespaceName,getNamespaceInfo,getNamespaceImports,getNamespaceExports,%
getNamespace,getLoadedDLLs,getHook,getExportedValue,getDLLRegisteredRoutines.character,%
getDLLRegisteredRoutines.DLLInfo,getDLLRegisteredRoutines,getConnection,getCallingDLLe,getCallingDLL,%
-getCConverterStatus,getCConverterDescriptions,getAllConnections,gc.time,formatDL,%
-format.pval,format.octmode,format.numeric_version,format.info,format.hexmode,%
-format.factor,format.difftime,format.default,format.data.frame,format.char,%
-format.POSIXlt,format.POSIXct,format.Date,format.AsIs,formals<-,%
-force,flush.connection,flush,findRestart,findPackageEnv,%
-findInterval,file.symlink,file.show,file.rename,file.remove,%
-file.path,file.info,file.exists,file.create,file.copy,%
-file.choose,file.append,file.access,fifo,factorial,%
-expm1,expand.grid,eval.parent,environmentName,environmentIsLocked,%
-environment<-,env.profile,enquote,encodeString,enc2utf8,%
-enc2native,emptyenv,eapply,dyn.unload,dyn.load,%
-duplicated.numeric_version,duplicated.matrix,duplicated.default,duplicated.data.frame,duplicated.array,%
-duplicated.POSIXlt,droplevels.factor,droplevels.data.frame,droplevels,do.call,%
-dir.create,dimnames<-.data.frame,dimnames<-,dimnames.data.frame,dim<-,%
-dim.data.frame,difftime,diff.default,diff.POSIXt,diff.Date,%
-diag<-,determinant.matrix,determinant,det,delayedAssign,%
-default.stringsAsFactors,debugonce,data.matrix,data.frame,data.class,%
-dQuote,cut.default,cut.POSIXt,cut.Date,contributors,%
-conditionMessage.condition,conditionMessage,conditionCall.condition,conditionCall,computeRestarts,%
-comment<-,colnames<-,colSums,colMeans,codes<-,%
-codes.ordered,codes.factor,closeAllConnections,close.srcfile,close.connection,%
-class<-,chol.default,check_tzones,chartr,charToRaw,%
-char.expand,cbind.data.frame,casefold,capabilities,callCC,%
-c.numeric_version,c.noquote,c.POSIXlt,c.POSIXct,c.Date,%
-bzfile,by.default,by.data.frame,browserText,browserSetDebug,%
-browserCondition,bquote,body<-,bindtextdomain,bindingIsLocked,%
-bindingIsActive,baseenv,attributes<-,attr<-,attr.all.equal,%
-attachNamespace,assign,asS4,asS3,asNamespace,%
-as.vector.factor,as.vector,as.table.default,as.table,as.symbol,%
-as.single.default,as.single,as.real,as.raw,as.qr,%
-as.pairlist,as.package_version,as.ordered,as.octmode,as.numeric_version,%
-as.numeric,as.null.default,as.null,as.name,as.matrix.noquote,%
-as.matrix.default,as.matrix.data.frame,as.matrix.POSIXlt,as.matrix,as.logical.factor,%
-as.logical,as.list.numeric_version,as.list.function,as.list.factor,as.list.environment,%
-as.list.default,as.list.data.frame,as.list.POSIXct,as.list.Date,as.list,%
-as.integer,as.hexmode,as.function.default,as.function,as.factor,%
-as.expression.default,as.expression,as.environment,as.double.difftime,as.double.POSIXlt,%
-as.double,as.difftime,as.data.frame.vector,as.data.frame.ts,as.data.frame.table,%
-as.data.frame.raw,as.data.frame.ordered,as.data.frame.numeric_version,as.data.frame.numeric,as.data.frame.model.matrix,%
-as.data.frame.matrix,as.data.frame.logical,as.data.frame.list,as.data.frame.integer,as.data.frame.factor,%
-as.data.frame.difftime,as.data.frame.default,as.data.frame.data.frame,as.data.frame.complex,as.data.frame.character,%
-as.data.frame.array,as.data.frame.POSIXlt,as.data.frame.POSIXct,as.data.frame.Date,as.data.frame.AsIs,%
-as.data.frame,as.complex,as.character.srcref,as.character.octmode,as.character.numeric_version,%
-as.character.hexmode,as.character.factor,as.character.error,as.character.default,as.character.condition,%
-as.character.POSIXt,as.character.Date,as.character,as.call,as.array.default,%
-as.array,as.POSIXlt.numeric,as.POSIXlt.factor,as.POSIXlt.default,as.POSIXlt.dates,%
-as.POSIXlt.date,as.POSIXlt.character,as.POSIXlt.POSIXct,as.POSIXlt.Date,as.POSIXlt,%
-as.POSIXct.numeric,as.POSIXct.default,as.POSIXct.dates,as.POSIXct.date,as.POSIXct.POSIXlt,%
-as.POSIXct.Date,as.POSIXct,as.Date.numeric,as.Date.factor,as.Date.default,%
-as.Date.dates,as.Date.date,as.Date.character,as.Date.POSIXlt,as.Date.POSIXct,%
-as.Date,arrayInd,anyDuplicated.matrix,anyDuplicated.default,anyDuplicated.data.frame,%
+getCConverterStatus,getCConverterDescriptions,getAllConnections,gctorture2,gc.time,%
+formatDL,format.pval,format.octmode,format.numeric_version,format.info,%
+format.hexmode,format.factor,format.difftime,format.default,format.data.frame,%
+format.char,format.POSIXlt,format.POSIXct,format.Date,format.AsIs,%
+formals<-,force,flush.connection,flush,findRestart,%
+findPackageEnv,findInterval,find.package,file.symlink,file.show,%
+file.rename,file.remove,file.path,file.link,file.info,%
+file.exists,file.create,file.copy,file.choose,file.append,%
+file.access,fifo,factorial,expm1,expand.grid,%
+eval.parent,environmentName,environmentIsLocked,environment<-,env.profile,%
+enquote,encodeString,enc2utf8,enc2native,emptyenv,%
+eapply,dyn.unload,dyn.load,duplicated.numeric_version,duplicated.matrix,%
+duplicated.default,duplicated.data.frame,duplicated.array,duplicated.POSIXlt,droplevels.factor,%
+droplevels.data.frame,droplevels,do.call,dir.create,dimnames<-.data.frame,%
+dimnames<-,dimnames.data.frame,dim<-,dim.data.frame,difftime,%
+diff.default,diff.POSIXt,diff.Date,diag<-,determinant.matrix,%
+determinant,det,delayedAssign,default.stringsAsFactors,debugonce,%
+data.matrix,data.frame,data.class,dQuote,cut.default,%
+cut.POSIXt,cut.Date,contributors,conditionMessage.condition,conditionMessage,%
+conditionCall.condition,conditionCall,computeRestarts,comment<-,colnames<-,%
+colSums,colMeans,codes<-,codes.ordered,codes.factor,%
+closeAllConnections,close.srcfile,close.connection,class<-,chol.default,%
+check_tzones,chartr,charToRaw,char.expand,cbind.data.frame,%
+casefold,capabilities,callCC,c.numeric_version,c.noquote,%
+c.POSIXlt,c.POSIXct,c.Date,bzfile,by.default,%
+by.data.frame,browserText,browserSetDebug,browserCondition,bquote,%
+body<-,bindtextdomain,bindingIsLocked,bindingIsActive,baseenv,%
+attributes<-,attr<-,attr.all.equal,attachNamespace,assign,%
+asS4,asS3,asNamespace,as.vector.factor,as.vector,%
+as.table.default,as.table,as.symbol,as.single.default,as.single,%
+as.real,as.raw,as.qr,as.pairlist,as.package_version,%
+as.ordered,as.octmode,as.numeric_version,as.numeric,as.null.default,%
+as.null,as.name,as.matrix.noquote,as.matrix.default,as.matrix.data.frame,%
+as.matrix.POSIXlt,as.matrix,as.logical.factor,as.logical,as.list.numeric_version,%
+as.list.function,as.list.factor,as.list.environment,as.list.default,as.list.data.frame,%
+as.list.POSIXct,as.list.Date,as.list,as.integer,as.hexmode,%
+as.function.default,as.function,as.factor,as.expression.default,as.expression,%
+as.environment,as.double.difftime,as.double.POSIXlt,as.double,as.difftime,%
+as.data.frame.vector,as.data.frame.ts,as.data.frame.table,as.data.frame.raw,as.data.frame.ordered,%
+as.data.frame.numeric_version,as.data.frame.numeric,as.data.frame.model.matrix,as.data.frame.matrix,as.data.frame.logical,%
+as.data.frame.list,as.data.frame.integer,as.data.frame.factor,as.data.frame.difftime,as.data.frame.default,%
+as.data.frame.data.frame,as.data.frame.complex,as.data.frame.character,as.data.frame.array,as.data.frame.POSIXlt,%
+as.data.frame.POSIXct,as.data.frame.Date,as.data.frame.AsIs,as.data.frame,as.complex,%
+as.character.srcref,as.character.octmode,as.character.numeric_version,as.character.hexmode,as.character.factor,%
+as.character.error,as.character.default,as.character.condition,as.character.POSIXt,as.character.Date,%
+as.character,as.call,as.array.default,as.array,as.POSIXlt.numeric,%
+as.POSIXlt.factor,as.POSIXlt.default,as.POSIXlt.dates,as.POSIXlt.date,as.POSIXlt.character,%
+as.POSIXlt.POSIXct,as.POSIXlt.Date,as.POSIXlt,as.POSIXct.numeric,as.POSIXct.default,%
+as.POSIXct.dates,as.POSIXct.date,as.POSIXct.POSIXlt,as.POSIXct.Date,as.POSIXct,%
+as.Date.numeric,as.Date.factor,as.Date.default,as.Date.dates,as.Date.date,%
+as.Date.character,as.Date.POSIXlt,as.Date.POSIXct,as.Date,arrayInd,%
+aperm.table,aperm.default,anyDuplicated.matrix,anyDuplicated.default,anyDuplicated.data.frame,%
anyDuplicated.array,anyDuplicated,all.vars,all.names,all.equal.raw,%
all.equal.numeric,all.equal.list,all.equal.language,all.equal.formula,all.equal.factor,%
all.equal.default,all.equal.character,all.equal.POSIXct,all.equal,agrep,%
@@ -825,15 +830,15 @@
Sys.unsetenv,Sys.umask,Sys.timezone,Sys.time,Sys.sleep,%
Sys.setlocale,Sys.setenv,Sys.readlink,Sys.putenv,Sys.localeconv,%
Sys.info,Sys.glob,Sys.getpid,Sys.getlocale,Sys.getenv,%
-Sys.chmod,Sys.Date,Summary.numeric_version,Summary.factor,Summary.difftime,%
-Summary.data.frame,Summary.POSIXlt,Summary.POSIXct,Summary.Date,Reduce,%
-R_system_version,RNGversion,R.version.string,R.version,R.home,%
-R.Version,Position,Ops.ordered,Ops.numeric_version,Ops.factor,%
-Ops.difftime,Ops.data.frame,Ops.POSIXt,Ops.Date,Negate,%
-Math.factor,Math.difftime,Math.data.frame,Math.POSIXt,Math.Date,%
-Map,La.svd,La.eigen,La.chol2inv,La.chol,%
-LETTERS,ISOdatetime,ISOdate,Find,Filter,%
-F,Encoding<-,Encoding,Cstack_info%
+Sys.chmod,Sys.Date,Summary.ordered,Summary.numeric_version,Summary.factor,%
+Summary.difftime,Summary.data.frame,Summary.POSIXlt,Summary.POSIXct,Summary.Date,%
+Reduce,R_system_version,RNGversion,R.version.string,R.version,%
+R.home,R.Version,Position,Ops.ordered,Ops.numeric_version,%
+Ops.factor,Ops.difftime,Ops.data.frame,Ops.POSIXt,Ops.Date,%
+Negate,Math.factor,Math.difftime,Math.data.frame,Math.POSIXt,%
+Math.Date,Map,La.svd,La.eigen,La.chol2inv,%
+La.chol,LETTERS,ISOdatetime,ISOdate,Find,%
+Filter,F,Encoding<-,Encoding,Cstack_info%
},%
keywordstyle={[10]{\bf\color{RRecomdcolor}}}%
%
@@ -1052,10 +1057,10 @@
> copySourceFromRForge("distr","R","AllClasses.R","distr", from =2, to =3,
+ offset.after=2)
$text
-[1] "# (.onload, .onattach ...)"
-[2] ".onLoad <- function(lib, pkg) { # extended 03-28-06: P.R. "
-[3] " require(\"methods\", character = TRUE, quietly = TRUE)"
-[4] "}"
+[1] "# (.onload, .onattach ...)"
+[2] ".onLoad <- function(lib, pkg) { # extended 03-28-06: P.R. "
+[3] "## require(\"methods\", character = TRUE, quietly = TRUE)"
+[4] "}"
$lines
[1] 2 5
@@ -1390,27 +1395,26 @@
> ### ** Examples
>
> require(survival)
-Warning: closing unused connection 3 (http://r-forge.r-project.org/scm/viewvc.php/*checkout*/pkg/distr/R/AllClasses.R?root=distr)
\lstdefinestyle{RstyleO4}{style=RstyleO3,%
% --------------------------
% Registration of package survival [recommended or base]
% --------------------------
-morekeywords={[12]veteran,untangle.specials,tobin,tcut,survregDtest,%
-survreg.fit,survreg.distributions,survreg.control,survreg,survobrien,%
-survfit,survexp.usr,survexp.us,survexp.mnwhite,survexp.mn,%
-survexp,survdiff,survSplit,survConcordance,strata,%
-stanford2,ridge,rats,ratetable,qsurvreg,%
-pyears,psurvreg,pspline,pbcseq,pbc,%
-ovarian,nwtco,mgus2,mgus1,mgus,%
-match.ratetable,lung,leukemia,labels.survreg,kidney,%
-jasa1,jasa,is.ratetable,is.na.ratetable,is.na.coxph.penalty,%
-is.na.Surv,is.Surv,heart,frailty.t,frailty.gaussian,%
-frailty.gamma,frailty,format.Surv,dsurvreg,coxph.fit,%
-coxph.detail,coxph.control,coxph,cox.zph,colon,%
-cluster,clogit,cgd,cch,cancer,%
-bladder2,bladder1,bladder,basehaz,attrassign,%
-aml,aareg,Surv%
+morekeywords={[12]veteran,untangle.specials,tt,tobin,tcut,%
+survregDtest,survreg.fit,survreg.distributions,survreg.control,survreg,%
+survobrien,survfitcoxph.fit,survfit,survexp.usr,survexp.us,%
+survexp.mn,survexp,survdiff,survSplit,survConcordance,%
+strata,stanford2,ridge,rats,ratetableDate,%
+ratetable,qsurvreg,pyears,psurvreg,pspline,%
+pbcseq,pbc,ovarian,nwtco,mgus2,%
+mgus1,mgus,match.ratetable,lung,leukemia,%
+labels.survreg,kidney,jasa1,jasa,is.ratetable,%
+is.na.ratetable,is.na.coxph.penalty,is.na.Surv,is.Surv,heart,%
+frailty.t,frailty.gaussian,frailty.gamma,frailty,format.Surv,%
+dsurvreg,coxph.fit,coxph.detail,coxph.control,coxph,%
+cox.zph,colon,cluster,clogit,cgd,%
+cch,cancer,bladder2,bladder1,bladder,%
+basehaz,attrassign,aml,aareg,Surv%
},%
keywordstyle={[12]{\bf\color{RRecomdcolor}}},%
%
@@ -2068,10 +2072,8 @@
> ### ** Examples
>
> readPkgVersion(package = "distr")
-Warning: closing unused connection 4 (http://r-forge.r-project.org/scm/viewvc.php/*checkout*/pkg/distr/R/BinomialDistribution.R?root=distr)
-Warning: closing unused connection 3 (http://r-forge.r-project.org/scm/viewvc.php/*checkout*/pkg/distr/man/Binom-class.Rd?root=distr)
Version
-[1,] "2.3"
+[1,] "2.3.3"
>
>
>
@@ -2092,7 +2094,7 @@
[1] "############# preparations ################"
[2] "# (.onload, .onattach ...)"
[3] ".onLoad <- function(lib, pkg) { # extended 03-28-06: P.R. "
- [4] " require(\"methods\", character = TRUE, quietly = TRUE)"
+ [4] "## require(\"methods\", character = TRUE, quietly = TRUE)"
[5] "}"
[6] ""
[7] ""
@@ -2813,7 +2815,7 @@
[722] " },"
[723] " d = function(x, log = FALSE){"
[724] " dbeta(x, shape1 = 1, shape2 = 1, ncp = 0,"
- [725] " lower.tail = lower.tail, log.p = log.p)"
+ [725] " log = log)"
[726] " },"
[727] " p = function(q, lower.tail = TRUE, log.p = FALSE ){"
[728] " pbeta(q, shape1 = 1, shape2 = 1, ncp = 0,"
@@ -3315,7 +3317,7 @@
> ### * <FOOTER>
> ###
> cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed: 0.29 0.05 1.969 0 0
+Time elapsed: 0.27 0.05 1.981 0 0
> grDevices::dev.off()
null device
1
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