[Distr-commits] r692 - in branches/distr-2.3/pkg: SweaveListingUtils/inst distr/inst distrDoc/inst distrEllipse/inst distrEx/inst distrMod/inst distrSim/inst distrTEst/inst distrTeach/inst utils
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu Dec 2 11:46:56 CET 2010
Author: ruckdeschel
Date: 2010-12-02 11:46:56 +0100 (Thu, 02 Dec 2010)
New Revision: 692
Modified:
branches/distr-2.3/pkg/SweaveListingUtils/inst/NEWS
branches/distr-2.3/pkg/distr/inst/NEWS
branches/distr-2.3/pkg/distrDoc/inst/NEWS
branches/distr-2.3/pkg/distrEllipse/inst/NEWS
branches/distr-2.3/pkg/distrEx/inst/NEWS
branches/distr-2.3/pkg/distrMod/inst/NEWS
branches/distr-2.3/pkg/distrSim/inst/NEWS
branches/distr-2.3/pkg/distrTEst/inst/NEWS
branches/distr-2.3/pkg/distrTeach/inst/NEWS
branches/distr-2.3/pkg/utils/NEWS
branches/distr-2.3/pkg/utils/showsvnlog.R
Log:
[utils]: updated call to system() for new arguments ignore.stdout, ignore.stderr
[allPkgs]: updated NEWS files
Modified: branches/distr-2.3/pkg/SweaveListingUtils/inst/NEWS
===================================================================
--- branches/distr-2.3/pkg/SweaveListingUtils/inst/NEWS 2010-11-29 20:11:13 UTC (rev 691)
+++ branches/distr-2.3/pkg/SweaveListingUtils/inst/NEWS 2010-12-02 10:46:56 UTC (rev 692)
@@ -3,6 +3,22 @@
######################################################################
##############
+v 0.5
+##############
+
+under the hood:
++ followed change in naming convention on r-forge,ie
+ base.url = "http://r-forge.r-project.org/scm/viewvc.php/*checkout*/pkg/"
+ instead of
+ base.url = "http://r-forge.r-project.org/plugins/scmsvn/viewcvs.php/*checkout*/pkg/"
++ quotes are now \texttt in listings by default (as required in jss)
+ --- fixes a quote - typesetting issue as required by JSS
++ DESCRIPTION files and package-help files gain a tag
+ SVNRevision to be filled by get[All]RevNr.R from utils in distr
+
+
+
+##############
v 0.4
##############
Modified: branches/distr-2.3/pkg/distr/inst/NEWS
===================================================================
--- branches/distr-2.3/pkg/distr/inst/NEWS 2010-11-29 20:11:13 UTC (rev 691)
+++ branches/distr-2.3/pkg/distr/inst/NEWS 2010-12-02 10:46:56 UTC (rev 692)
@@ -8,6 +8,104 @@
information)
##############
+v 2.3
+##############
+
+user-visible CHANGES:
+
+- parameter size in NegbinomDistribution can now be real-valued
+- introduced igamma, the inverse of digamma and corresponding transformations;
+ distr: drastically reduced memory needed by smaller grid for igamma
++ distr: implemented Nataliya's quantile trick to avoid simulated grid points
+
+GENERAL ENHANCEMENTS:
+
++ [qqplot]
+ - had forgot to delete some legend arguments from call mcl ...
+ - gains arguments legend.pref and legend.postf to pre/ap-pend text before/after legend text
+ - CIs in qqplot may now comprise +-Inf values
+ - gains argument legend.alpha to be able to distinguish nominal and actual confidence level
+
+under the hood:
++ DESCRIPTION files and package-help files gain a tag
+ SVNRevision to be filled by get[All]RevNr.R from utils in distr
+
+BUGFIXES:
+
++ old version of AllClasses.R for package "distr" was fetched
+ from R-Forge - warning after merging branch 2.2 into trunk
+
++ got strange unreproducible error reports in the example to
+ simplifyD; set seed now to avoid this.
+
++ (hopefully) fixed http://n4.nabble.com/R-devel-f909078.html
+
++ fixed an error with qqplot in distr: mfColRow did not work as it should
+ ... now can be used in multipanel plots
++ fixed minor error in internals-qqplot.R
+
++ for restoring old par() values, not all attributes may be set;
+ hence deleted them from stored value in plot functions by something like
+ opar$cin <- opar$cra <- opar$csi <- opar$cxy <- opar$din <- NULL
+
++ Typos in plot functions...
+
++ implemented Matthias' proposals, ie
+ (1)
+ [old]
+ newd <- (abs(newd) >= .Machine$double.eps)*newd
+ [new]
+ newd <- (newd >= .Machine$double.eps)*newd
+
+ (2)
+ [old]
+ rsum.u <- min( sum( rev(cumsum(rev(newd))) <= ep/2)+1, length(supp1))
+ [new]
+ rsum.u <- min( sum( !(cumsum(rev(newd)) <= ep/2))+1, length(supp1))
+
+
++ a renaming schedule : enforcing ending .R in convpow.R
+
++ fixed typo in corrected version of Convpow.R
+
++ tentative fix for Uwe Ligges' bug report obsevered in
+ http://cran.r-project.org/bin/windows/contrib/2.12/check/distr-check.log 15-06-2010
+
+
++ unnecessary Rplots.pdf deleted from inst folders of
+ distr and distrMod (are created anyway during vignette build)
+
++ changed mail address:
+ triggered by mail by Sven Sewitz sas69 at cam.ac.uk, replaced all dead links
+ to distr.pdf in www files by url to vignette of distrDoc on CRAN;
+ also replaced uni-bayreuth.de mail address by itwm.fraunhofer.de one
+
+----------------
+Changes after changes in R , R-forge
+----------------
+
++ cleanup issues:
+
+ -Package: distr Version: 2.2 Flavor: r-devel-linux-ix86
+ Check: package vignettes ... WARNING
+ *** Weave Errors ***
+ File /home/hornik/tmp/R.check/r-devel/Work/PKGS/distr.Rcheck/inst/doc/newDistributions.Rnw :
+ chunk 20 (label=cleanup)
+ Error : package ‘SweaveListingUtils’ is required by ‘distr’ so will not be detached
+
+
+ => removed tag in distr.Rnw in distrDoc
+ <<cleanup, echo=FALSE>>=
+ unloadNamespace("SweaveListingUtils")
+ @
+ similarly in newDistributions.Rnw
+
+ => small changes in SweaveListingUtils in order to pass R CMD check again...
+
+
+
+
+##############
v 2.2
##############
Modified: branches/distr-2.3/pkg/distrDoc/inst/NEWS
===================================================================
--- branches/distr-2.3/pkg/distrDoc/inst/NEWS 2010-11-29 20:11:13 UTC (rev 691)
+++ branches/distr-2.3/pkg/distrDoc/inst/NEWS 2010-12-02 10:46:56 UTC (rev 692)
@@ -8,6 +8,45 @@
information)
##############
+v 2.3
+##############
+
+under the hood:
++ DESCRIPTION files and package-help files gain a tag
+ SVNRevision to be filled by get[All]RevNr.R from utils in distr
+
+
+BUGFIXES:
+
++ changed mail address:
+ triggered by mail by Sven Sewitz sas69 at cam.ac.uk, replaced all dead links
+ to distr.pdf in www files by url to vignette of distrDoc on CRAN;
+ also replaced uni-bayreuth.de mail address by itwm.fraunhofer.de one
+
+----------------
+Changes after changes in R , R-forge
+----------------
+
++ cleanup issues:
+
+ -Package: distrDoc Version: 2.2 Flavor: r-devel-linux-ix86
+ Check: package vignettes ... WARNING
+ *** Weave Errors ***
+ File /home/hornik/tmp/R.check/r-devel/Work/PKGS/distrDoc.Rcheck/inst/doc/distr.Rnw :
+ chunk 36 (label=plotex9)
+ Error : '\%' is an unrecognized escape in character string starting "my Distribution: \%"
+
+ => removed tag in distr.Rnw in distrDoc
+ <<cleanup, echo=FALSE>>=
+ unloadNamespace("SweaveListingUtils")
+ @
+ similarly in newDistributions.Rnw
+
+ => small changes in SweaveListingUtils in order to pass R CMD check again...
+
+
+
+##############
v 2.2
##############
Modified: branches/distr-2.3/pkg/distrEllipse/inst/NEWS
===================================================================
--- branches/distr-2.3/pkg/distrEllipse/inst/NEWS 2010-11-29 20:11:13 UTC (rev 691)
+++ branches/distr-2.3/pkg/distrEllipse/inst/NEWS 2010-12-02 10:46:56 UTC (rev 692)
@@ -8,6 +8,15 @@
information)
##############
+v 2.3
+##############
+
+No extra changes this time
+
++ DESCRIPTION files and package-help files gain a tag
+ SVNRevision to be filled by get[All]RevNr.R from utils in distr
+
+##############
v 2.2
##############
Modified: branches/distr-2.3/pkg/distrEx/inst/NEWS
===================================================================
--- branches/distr-2.3/pkg/distrEx/inst/NEWS 2010-11-29 20:11:13 UTC (rev 691)
+++ branches/distr-2.3/pkg/distrEx/inst/NEWS 2010-12-02 10:46:56 UTC (rev 692)
@@ -8,6 +8,42 @@
information)
##############
+v 2.3
+##############
+
+user-visible CHANGES:
+
++ new default method for CvMDist (i.e. for mu=e2) instead of numerical
+ integration uses explicit terms => by factor 30 faster!
+
++ Nataliya produced a C-version of kMad; integrated to distrEx now
+
++ Generalized Extreme Value Distribution is ported to distrEx
+
++ Gumbel in distrEx has different parametrization as GEV with shape = 0
+
+under the hood:
+
++ DESCRIPTION files and package-help files gain a tag
+ SVNRevision to be filled by get[All]RevNr.R from utils in distr
+
+
+BUGFIXES:
+
++ found a bug in setMethod("var", signature(x = "UnivariateDistribution"))
+ for spherical symmetric distributions
+
++ Small bug in Expectation.R was found
+
++ Gumbel in distrEx has different parametrization
+ as GEV with shape = 0
+
++ fixed several buglets in GEV
+ * small error for xi = 0 in Functionals.R and Expecation.R
+ * completed unfinished documentation
+
+
+##############
v 2.2
##############
Modified: branches/distr-2.3/pkg/distrMod/inst/NEWS
===================================================================
--- branches/distr-2.3/pkg/distrMod/inst/NEWS 2010-11-29 20:11:13 UTC (rev 691)
+++ branches/distr-2.3/pkg/distrMod/inst/NEWS 2010-12-02 10:46:56 UTC (rev 692)
@@ -8,6 +8,48 @@
information)
##############
+v 2.3
+##############
+
+user-visible CHANGES:
+
++ introduced NbinomFamily in response to Markus Kalisch's mail to RsR
++ restated L2-deriv and L2-deriv distribution s.t. it is computationally easier to treat
++ also now allow 2-parametric model Nbinom (see SimpleL2ParamFamilies.R...)
+
+++ Vignette:
+ + uploaded vignette for distrMod (still to be done: insert exact volume,number,pages)
+ + Matthias' Kommentare (Kreis-Symbol, Rem) geändert
+ + merged in Matthias' changes
+ + integrated JSS version of vignette
+ + vignette distrMod fertiggemacht
+
++ vignette announced in startup msg
++ meta-information included to vignette
+
+under the hood:
+
++ DESCRIPTION files and package-help files gain a tag
+ SVNRevision to be filled by get[All]RevNr.R from utils in distr
+
+
+BUGFIXES:
+
++ re-uploaded svn-multi.sty and svnkw.sty after error report by Jan de Leeuw.
++ made doc for NbinomFamily error-free
+
+Bug
++ qqplot
+ https://r-forge.r-project.org/tracker/?atid=400&group_id=87&func=browse
+ should be fixed
++ for restoring old par() values, not all attributes may be set; hence deleted them from
+ stored value in plot functions by something like
+ opar$cin <- opar$cra <- opar$csi <- opar$cxy <- opar$din <- NULL
+
++ unnecessary Rplots.pdf deleted from inst folders of distr and
+ distrMod (are created anyway during vignette build)
+
+##############
v 2.2.2
##############
Vignette to distrMod aka
Modified: branches/distr-2.3/pkg/distrSim/inst/NEWS
===================================================================
--- branches/distr-2.3/pkg/distrSim/inst/NEWS 2010-11-29 20:11:13 UTC (rev 691)
+++ branches/distr-2.3/pkg/distrSim/inst/NEWS 2010-12-02 10:46:56 UTC (rev 692)
@@ -8,6 +8,15 @@
information)
##############
+v 2.3
+##############
+
+No extra changes this time
+
++ DESCRIPTION files and package-help files gain a tag
+ SVNRevision to be filled by get[All]RevNr.R from utils in distr
+
+ ##############
v 2.2
##############
Modified: branches/distr-2.3/pkg/distrTEst/inst/NEWS
===================================================================
--- branches/distr-2.3/pkg/distrTEst/inst/NEWS 2010-11-29 20:11:13 UTC (rev 691)
+++ branches/distr-2.3/pkg/distrTEst/inst/NEWS 2010-12-02 10:46:56 UTC (rev 692)
@@ -3,6 +3,15 @@
######################################################################
##############
+v 2.3
+##############
+
+No extra changes this time
+
++ DESCRIPTION files and package-help files gain a tag
+ SVNRevision to be filled by get[All]RevNr.R from utils in distr
+
+##############
v 2.2
##############
Modified: branches/distr-2.3/pkg/distrTeach/inst/NEWS
===================================================================
--- branches/distr-2.3/pkg/distrTeach/inst/NEWS 2010-11-29 20:11:13 UTC (rev 691)
+++ branches/distr-2.3/pkg/distrTeach/inst/NEWS 2010-12-02 10:46:56 UTC (rev 692)
@@ -8,6 +8,14 @@
information)
##############
+v 2.3
+##############
+
+No extra changes this time
++ DESCRIPTION files and package-help files gain a tag
+ SVNRevision to be filled by get[All]RevNr.R from utils in distr
+
+##############
v 2.2
##############
Modified: branches/distr-2.3/pkg/utils/NEWS
===================================================================
--- branches/distr-2.3/pkg/utils/NEWS 2010-11-29 20:11:13 UTC (rev 691)
+++ branches/distr-2.3/pkg/utils/NEWS 2010-12-02 10:46:56 UTC (rev 692)
@@ -5,7 +5,12 @@
### distrXXX family version 2.3
+ new utils getRevNr, getAllRevNr to obtain SVN Revision Nr
++ DESCRIPTION files and package-help files gain a tag
+ SVNRevision to be filled by get[All]RevNr.R from utils in distr
++ correspondingly DESCRIPTIONutils and setNewVersion.r from utils are extended for this purpose
++ showsvnlog now works with new system() syntax
+
### distrXXX family version 2.2
+ ladealles.R now loads both .r and .R files
Modified: branches/distr-2.3/pkg/utils/showsvnlog.R
===================================================================
--- branches/distr-2.3/pkg/utils/showsvnlog.R 2010-11-29 20:11:13 UTC (rev 691)
+++ branches/distr-2.3/pkg/utils/showsvnlog.R 2010-12-02 10:46:56 UTC (rev 692)
@@ -46,7 +46,7 @@
inQuotes(pathRepo), fromRev, toRev, limit,
inQuotes(tmpfile), ifelse(withChPaths,1,0))
cat(comd,"\n")
- system(comd,intern=FALSE,ignore=TRUE,wait=TRUE)
+ system(comd,intern=FALSE,ignore.stdout=TRUE,ignore.stderr=TRUE,wait=TRUE)
zz<-readLines(tmpfile)
zz<-gsub("(-{50}.*)", "\n\\1",zz)
zz<-gsub("(r[[:digit:]]{1,4}.*)",paste("\\1\n",myline,sep=""),zz)
@@ -65,4 +65,7 @@
showsvnlog(from=300,to=Inf,limit=1000)
showsvnlog(from=1,to=Inf,limit=1000,con="C:/rtest/svnlog-distr.txt")
showsvnlog("robast",from=1,to=Inf,limit=1000,con="C:/rtest/svnlog-robast.txt")
+showsvnlog(from=680,to=Inf,limit=1000,con="C:/rtest/svnlog-distr-ex.txt")
+showsvnlog("robast",from=420,to=Inf,limit=1000,con="C:/rtest/svnlog-robast-ex.txt")
}
+
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