[Distr-commits] r605 - in branches/distr-2.2/pkg/SweaveListingUtils: . tests tests/Examples
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Fri Oct 16 05:24:10 CEST 2009
Author: stamats
Date: 2009-10-16 05:24:10 +0200 (Fri, 16 Oct 2009)
New Revision: 605
Added:
branches/distr-2.2/pkg/SweaveListingUtils/tests/
branches/distr-2.2/pkg/SweaveListingUtils/tests/Examples/
branches/distr-2.2/pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save
Log:
added *-Ex.Rout.save to new tests/Examples folder
Added: branches/distr-2.2/pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save
===================================================================
--- branches/distr-2.2/pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save (rev 0)
+++ branches/distr-2.2/pkg/SweaveListingUtils/tests/Examples/SweaveListingUtils-Ex.Rout.save 2009-10-16 03:24:10 UTC (rev 605)
@@ -0,0 +1,3240 @@
+
+R version 2.10.0 beta (2009-10-15 r50107)
+Copyright (C) 2009 The R Foundation for Statistical Computing
+ISBN 3-900051-07-0
+
+R is free software and comes with ABSOLUTELY NO WARRANTY.
+You are welcome to redistribute it under certain conditions.
+Type 'license()' or 'licence()' for distribution details.
+
+ Natural language support but running in an English locale
+
+R is a collaborative project with many contributors.
+Type 'contributors()' for more information and
+'citation()' on how to cite R or R packages in publications.
+
+Type 'demo()' for some demos, 'help()' for on-line help, or
+'help.start()' for an HTML browser interface to help.
+Type 'q()' to quit R.
+
+> ### * <HEADER>
+> ###
+> attach(NULL, name = "CheckExEnv")
+> assign("nameEx",
++ local({
++ s <- "__{must remake R-ex/*.R}__"
++ function(new) {
++ if(!missing(new)) s <<- new else s
++ }
++ }),
++ pos = "CheckExEnv")
+> ## Add some hooks to label plot pages for base and grid graphics
+> assign("base_plot_hook",
++ function() {
++ pp <- par(c("mfg","mfcol","oma","mar"))
++ if(all(pp$mfg[1:2] == c(1, pp$mfcol[2]))) {
++ outer <- (oma4 <- pp$oma[4]) > 0; mar4 <- pp$mar[4]
++ mtext(sprintf("help(\"%s\")", nameEx()), side = 4,
++ line = if(outer)max(1, oma4 - 1) else min(1, mar4 - 1),
++ outer = outer, adj = 1, cex = .8, col = "orchid", las=3)
++ }
++ },
++ pos = "CheckExEnv")
+> assign("grid_plot_hook",
++ function() {
++ grid::pushViewport(grid::viewport(width=grid::unit(1, "npc") -
++ grid::unit(1, "lines"), x=0, just="left"))
++ grid::grid.text(sprintf("help(\"%s\")", nameEx()),
++ x=grid::unit(1, "npc") + grid::unit(0.5, "lines"),
++ y=grid::unit(0.8, "npc"), rot=90,
++ gp=grid::gpar(col="orchid"))
++ },
++ pos = "CheckExEnv")
+> setHook("plot.new", get("base_plot_hook", pos = "CheckExEnv"))
+> setHook("persp", get("base_plot_hook", pos = "CheckExEnv"))
+> setHook("grid.newpage", get("grid_plot_hook", pos = "CheckExEnv"))
+> assign("cleanEx",
++ function(env = .GlobalEnv) {
++ rm(list = ls(envir = env, all.names = TRUE), envir = env)
++ RNGkind("default", "default")
++ set.seed(1)
++ options(warn = 1)
++ .CheckExEnv <- as.environment("CheckExEnv")
++ delayedAssign("T", stop("T used instead of TRUE"),
++ assign.env = .CheckExEnv)
++ delayedAssign("F", stop("F used instead of FALSE"),
++ assign.env = .CheckExEnv)
++ sch <- search()
++ newitems <- sch[! sch %in% .oldSearch]
++ for(item in rev(newitems))
++ eval(substitute(detach(item), list(item=item)))
++ missitems <- .oldSearch[! .oldSearch %in% sch]
++ if(length(missitems))
++ warning("items ", paste(missitems, collapse=", "),
++ " have been removed from the search path")
++ },
++ pos = "CheckExEnv")
+> assign("ptime", proc.time(), pos = "CheckExEnv")
+> ## at least one package changes these via ps.options(), so do this
+> ## before loading the package.
+> ## Use postscript as incomplete files may be viewable, unlike PDF.
+> ## Choose a size that is close to on-screen devices, fix paper
+> grDevices::ps.options(width = 7, height = 7, paper = "a4", reset = TRUE)
+> grDevices::postscript("SweaveListingUtils-Ex.ps")
+>
+> assign("par.postscript", graphics::par(no.readonly = TRUE), pos = "CheckExEnv")
+> options(contrasts = c(unordered = "contr.treatment", ordered = "contr.poly"))
+> options(warn = 1)
+> library('SweaveListingUtils')
+Loading required package: startupmsg
+:startupmsg> Utilities for start-up messages (version 0.7)
+:startupmsg>
+:startupmsg> For more information see ?"startupmsg",
+:startupmsg> NEWS("startupmsg")
+
+:SweaveListingUtils> Utilities for Sweave together with
+:SweaveListingUtils> TeX listings package (version 0.4)
+:SweaveListingUtils>
+:SweaveListingUtils> Some functions from package 'base'
+:SweaveListingUtils> are intentionally masked ---see
+:SweaveListingUtils> SweaveListingMASK().
+:SweaveListingUtils>
+:SweaveListingUtils> Note that global options are
+:SweaveListingUtils> controlled by
+:SweaveListingUtils> SweaveListingoptions() ---c.f.
+:SweaveListingUtils> ?"SweaveListingoptions".
+:SweaveListingUtils>
+:SweaveListingUtils> For more information see
+:SweaveListingUtils> ?"SweaveListingUtils",
+:SweaveListingUtils> NEWS("SweaveListingUtils")
+:SweaveListingUtils> There is a vignette to this
+:SweaveListingUtils> package; try
+:SweaveListingUtils> vignette("ExampleSweaveListingUtils").
+
+
+Attaching package: 'SweaveListingUtils'
+
+
+ The following object(s) are masked from package:base :
+
+ library,
+ require
+
+>
+> assign(".oldSearch", search(), pos = 'CheckExEnv')
+> assign(".oldNS", loadedNamespaces(), pos = 'CheckExEnv')
+> cleanEx(); nameEx("SweaveListingMASK")
+> ### * SweaveListingMASK
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: SweaveListingMASK
+> ### Title: Masking of/by other functions in package "SweaveListingUtils"
+> ### Aliases: SweaveListingMASK MASKING
+> ### Keywords: programming documentation
+>
+> ### ** Examples
+>
+> SweaveListingMASK()
+######################################################################
+# On masking of and by other functions in package "SweaveListingUtils"
+######################################################################
+
+Attention:
+
+*** intentional masking: ***
+
+To be able to use the usual calls to 'library' resp. 'require'
+but at the same time register the new symbols for "nice" printing
+with TeX package 'listings' with the possibility to "tune" the
+corresponding keywordstyle for both the package required/"library"-ed
+and respective intermediate packages loaded/attached automatically,
+we intentionally mask base functions 'library' and 'require' ---
+however all these functions may still be used in exactly the same
+way as before masking.
+
+Still, for completely returning to the usual behaviour (i.e.; stop
+issuing TeX code for registering new keywords) and unmasking
+the original versions of 'library' and 'require', at the end of
+your .Rnw file, you should include an Sweave chunk like
+
+<<cleanup, echo=FALSE>>=
+unloadNamespace("SweaveListingUtils")
+@
+
+*** non-intentional masking: ***
+
+... nothing discovered so far ...
+>
+>
+>
+> cleanEx(); nameEx("SweaveListingOptions")
+> ### * SweaveListingOptions
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: SweaveListingOptions
+> ### Title: Function to change the global options of the package
+> ### `SweaveListingUtils'
+> ### Aliases: SweaveListingOptions SweaveListingoptions
+> ### getSweaveListingOption Rset Rdset Rin Rout Rcode Rcolor Rbcolor
+> ### Routcolor RRecomdcolor Rcommentcolor pkg pkv Keywordstyle
+> ### Recomd.Keywordstyle interm.Keywordstyle intermediate overwrite
+> ### inSweave fromRForge base.url addRset addRdset fileCommand pkgCommand
+> ### Keywords: misc utilities
+>
+> ### ** Examples
+>
+> SweaveListingOptions()
+$Rset
+$Rset$fancyvrb
+[1] "true"
+
+$Rset$escapechar
+[1] "`"
+
+$Rset$extendedchars
+[1] "false"
+
+$Rset$language
+[1] "R"
+
+$Rset$basicstyle
+[1] "{\\color{Rcolor}\\small}"
+
+$Rset$keywordstyle
+[1] "{\\bf\\color{Rcolor}}"
+
+$Rset$commentstyle
+[1] "{\\color{Rcommentcolor}\\ttfamily\\itshape}"
+
+$Rset$literate
+[1] "{<-}{{$\\leftarrow$}}2{<<-}{{$\\twoheadleftarrow$}}2{~}{{$\\sim$}}1{<=}{{$\\leq$}}2{>=}{{$\\geq$}}2{^}{{$\\scriptstyle\\wedge$}}1"
+
+$Rset$alsoother
+[1] "{$}"
+
+$Rset$alsoletter
+[1] "{.<-}"
+
+$Rset$otherkeywords
+[1] "{!,!=,~,$,*,\\&,\\%/\\%,\\%*\\%,\\%\\%,<-,<<-,/}"
+
+$Rset$escapeinside
+[1] "{(*}{*)}"
+
+
+$Rdset
+$Rdset$fancyvrb
+[1] "true"
+
+$Rdset$language
+[1] "Rd"
+
+$Rdset$keywordstyle
+[1] "{\\bf}"
+
+$Rdset$basicstyle
+[1] "{\\color{black}\\footnotesize}"
+
+$Rdset$commentstyle
+[1] "{\\ttfamily\\itshape}"
+
+$Rdset$alsolanguage
+[1] "R"
+
+
+$Rin
+$Rin$style
+[1] "Rstyle"
+
+$Rin$fancyvrb
+[1] "true"
+
+$Rin$basicstyle
+[1] "\\color{Rcolor}\\small"
+
+
+$Rout
+$Rout$fancyvrb
+[1] "false"
+
+$Rout$basicstyle
+[1] "\\color{Routcolor}\\small"
+
+
+$Rcode
+$Rcode$style
+[1] "Rstyle"
+
+$Rcode$fancyvrb
+[1] "true"
+
+$Rcode$fontshape
+[1] "sl"
+
+$Rcode$basicstyle
+[1] "\\color{Rcolor}"
+
+
+$Rcolor
+[1] 0.0 0.5 0.5
+
+$RRecomdcolor
+[1] 0.0 0.6 0.4
+
+$Rbcolor
+[1] 0.0 0.6 0.6
+
+$Routcolor
+[1] 0.461 0.039 0.102
+
+$Rcommentcolor
+[1] 0.101 0.043 0.432
+
+$pkv
+[1] "2.1.4"
+
+$pkg
+[1] "distr"
+
+$Keywordstyle
+[1] "{\\bf}"
+
+$Recomd.Keywordstyle
+[1] "{\\bf\\color{RRecomdcolor}}"
+
+$interm.Keywordstyle
+[1] "{\\bf\\color{Rbcolor}}"
+
+$overwrite
+[1] FALSE
+
+$intermediate
+[1] TRUE
+
+$inSweave
+[1] FALSE
+
+$fromRForge
+[1] TRUE
+
+$base.url
+[1] "http://r-forge.r-project.org/plugins/scmsvn/viewcvs.php/*checkout*/pkg/"
+
+$addRset
+[1] TRUE
+
+$addRdset
+[1] TRUE
+
+$addRinset
+[1] TRUE
+
+$addRoutset
+[1] TRUE
+
+$addRcodeset
+[1] TRUE
+
+$fileCommand
+[1] "\\def\\file#1{{\\tt #1}}"
+
+$pkgCommand
+[1] "\\def\\pkg#1{{\\tt \"#1\"}}"
+
+> SweaveListingOptions("Rout")
+$Rout
+$Rout$fancyvrb
+[1] "false"
+
+$Rout$basicstyle
+[1] "\\color{Routcolor}\\small"
+
+
+> SweaveListingOptions("Rout" = c(0,0,0))
+> # or
+> SweaveListingOptions(Rout = c(0,1,0))
+> getSweaveListingOption("Rout")
+[1] 0 1 0
+>
+>
+>
+> cleanEx(); nameEx("SweaveListingPreparations")
+> ### * SweaveListingPreparations
+>
+> flush(stderr()); flush(stdout())
+>
+> ### Name: SweaveListingPreparations
+> ### Title: SweaveListingPreparations
+> ### Aliases: SweaveListingPreparations
+> ### Keywords: utilities
+>
+> ### ** Examples
+>
+> SweaveListingPreparations()
+%------------------------------------------------------------------------------%
+%Preparations for Sweave and Listings
+%------------------------------------------------------------------------------%
+%
+\RequirePackage{color}
+\definecolor{Rcolor}{rgb}{0, 0.5, 0.5}
+\definecolor{RRecomdcolor}{rgb}{0, 0.6, 0.4}
+\definecolor{Rbcolor}{rgb}{0, 0.6, 0.6}
+\definecolor{Routcolor}{rgb}{0.461, 0.039, 0.102}
+\definecolor{Rcommentcolor}{rgb}{0.101, 0.043, 0.432}
+%------------------------------------------------------------------------------%
+\lstdefinelanguage{Rd}[common]{TeX}%
+{moretexcs={acronym,alias,arguments,author,bold,cite,%
+ code,command,concept,cr,deqn,describe,%
+ description,details,dfn,doctype,dots,%
+ dontrun,dontshow,donttest,dQuote,%
+ email,emph,enc,encoding,enumerate,env,eqn,%
+ examples,file,format,item,itemize,kbd,keyword,%
+ ldots,link,linkS4class,method,name,note,%
+ option,pkg,preformatted,R,Rdopts,Rdversion,%
+ references,S3method,S4method,Sexpr,samp,section,%
+ seealso,source,sp,special,%
+ sQuote,strong,synopsis,tab,tabular,testonly,%
+ title,url,usage,value,var,verb},
+ sensitive=true,%
+ morecomment=[l]\%% 2008/9 Peter Ruckdeschel
+}[keywords,comments]%%
+%------------------------------------------------------------------------------%
+
+%----------------
+\lstdefinestyle{RstyleO1}{fancyvrb=true,escapechar=`,extendedchars=false,%
+ language=R,%
+ basicstyle={\color{Rcolor}\small},%
+ keywordstyle={\bf\color{Rcolor}},%
+ commentstyle={\color{Rcommentcolor}\ttfamily\itshape},%
+ literate={<-}{{$\leftarrow$}}2{<<-}{{$\twoheadleftarrow$}}2{~}{{$\sim$}}1{<=}{{$\leq$}}2{>=}{{$\geq$}}2{^}{{$\scriptstyle\wedge$}}1,%
+ alsoother={$},%
+ alsoletter={.<-},%
+ otherkeywords={!,!=,~,$,*,\&,\%/\%,\%*\%,\%\%,<-,<<-,/},%
+ escapeinside={(*}{*)}}%
+%----------------
+\lstdefinestyle{Rstyle}{style=RstyleO1}
+
+%----------------
+\lstdefinestyle{Rdstyle}{fancyvrb=true,language=Rd,keywordstyle={\bf},%
+ basicstyle={\color{black}\footnotesize},%
+ commentstyle={\ttfamily\itshape},%
+ alsolanguage=R}%
+%----------------
+%------------------------------------------------------------------------------%
+\global\def\Rlstset{\lstset{style=Rstyle}}%
+\global\def\Rdlstset{\lstset{style=Rdstyle}}%
+%------------------------------------------------------------------------------%
+\global\def\Rinlstset{\lstset{style=Rinstyle}}%
+\global\def\Routlstset{\lstset{style=Routstyle}}%
+\global\def\Rcodelstset{\lstset{style=Rcodestyle}}%
+%------------------------------------------------------------------------------%
+\Rlstset
+%------------------------------------------------------------------------------%
+%copying relevant parts of Sweave.sty
+%------------------------------------------------------------------------------%
+%
+\RequirePackage{graphicx,fancyvrb}%
+\IfFileExists{upquote.sty}{\RequirePackage{upquote}}{}%
+
+\RequirePackage{ifthen}%
+\newboolean{Sweave at gin}%
+\setboolean{Sweave at gin}{true}%
+\setkeys{Gin}{width=0.8\textwidth}%
+\newboolean{Sweave at ae}
+\setboolean{Sweave at ae}{true}%
+\RequirePackage[T1]{fontenc}
+\RequirePackage{ae}
+%
+\newenvironment{Schunk}{}{}
+
+\newcommand{\Sconcordance}[1]{%
+\ifx\pdfoutput\undefined%
+\csname newcount\endcsname\pdfoutput\fi%
+\ifcase\pdfoutput\special{#1}%
+\else\immediate\pdfobj{#1}\fi}
+
+%------------------------------------------------------------------------------%
+% ---- end of parts of Sweave.sty
+%------------------------------------------------------------------------------%
+%
+% ---- input
+\lstdefinestyle{RinstyleO}{style=Rstyle,fancyvrb=true,%
+ basicstyle=\color{Rcolor}\small}%
+\lstdefinestyle{Rinstyle}{style=RinstyleO}
+\lstnewenvironment{Sinput}{\Rinlstset}{\Rlstset}
+%
+% ---- output
+\lstdefinestyle{RoutstyleO}{
+V1=0,V2=1,V3=0}%
+\lstdefinestyle{Routstyle}{style=RoutstyleO}
+\lstnewenvironment{Soutput}{\Routlstset}{\Rlstset}
+%
+% ---- code
+\lstdefinestyle{RcodestyleO}{style=Rstyle,fancyvrb=true,fontshape=sl,%
+ basicstyle=\color{Rcolor}}%
+\lstdefinestyle{Rcodestyle}{style=RcodestyleO}
+\lstnewenvironment{Scode}{\Rcodelstset}{\Rlstset}
+%
+%------------------------------------------------------------------------------%
+\let\code\lstinline
+\def\Code#1{{\tt\color{Rcolor} #1}}
+\def\file#1{{\tt #1}}
+\def\pkg#1{{\tt "#1"}}
+\newcommand{\pkgversion}{{\tt 2.2}}
+%------------------------------------------------------------------------------%
+Warning in kws[idxRec] <- rep(getSweaveListingOption("Recomd.Keywordstyle"), :
+ number of items to replace is not a multiple of replacement length
+
+\lstdefinestyle{RstyleO2}{style=RstyleO1,%
+% --------------------------
+% Registration of package SweaveListingUtils
+% --------------------------
+morekeywords={[2]taglist,SweaveListingPreparations,SweaveListingOptions,SweaveListingoptions,SweaveListingMASK,%
+setToBeDefinedPkgs,setBaseOrRecommended,readSourceFromRForge,readPkgVersion,lstsetRout,%
+lstsetRin,lstsetRd,lstsetRcode,lstsetRall,lstsetR,%
+lstsetLanguage,lstset,lstinputSourceFromRForge,lstdefRstyle,isBaseOrRecommended,%
+getSweaveListingOption,copySourceFromRForge,changeKeywordstyles%
+},%
+keywordstyle={[2]{\bf}},%
+%
+% --------------------------
+% Registration of package startupmsg
+% --------------------------
+morekeywords={[3]TOBEDONE,suppressStartupMessages,startupType,startupPackage,StartupMessage,%
+startupMessage,startupEndline,readVersionInformation,readURLInformation,pointertoNEWS,%
+onlytypeStartupMessages,NEWS,mystartupMessage,mySMHandler,infoShow,%
+buildStartupMessage%
+},%
+keywordstyle={[3]{\bf}},%
+%
+% --------------------------
+% Registration of package stats [recommended or base]
+% --------------------------
+morekeywords={[4]xtabs,write.ftable,window<-,wilcox.test,weighted.residuals,%
+weighted.mean,vcov,var.test,varimax,variable.names,%
+update.formula,update.default,TukeyHSD.aov,TukeyHSD,t.test,%
+ts.union,tsSmooth,ts.plot,tsp<-,ts.intersect,%
+tsdiag,toeplitz,terms.terms,terms.formula,terms.default,%
+terms.aovlist,termplot,supsmu,summary.stepfun,summary.mlm,%
+summary.manova,summary.lm,summary.infl,summary.glm,summary.aovlist,%
+summary.aov,StructTS,stl,stepfun,stat.anova,%
+SSweibull,SSmicmen,SSlogis,SSgompertz,SSfpl,%
+SSfol,SSD,SSbiexp,SSasympOrig,SSasympOff,%
+SSasymp,splinefunH,spectrum,spec.taper,spec.pgram,%
+spec.ar,sortedXyData,smooth.spline,smoothEnds,smooth,%
+simulate,shapiro.test,setNames,selfStart,se.contrast,%
+screeplot,scatter.smooth,runmed,rstudent.lm,rstudent.glm,%
+rstandard.lm,rstandard.glm,rmultinom,residuals.lm,residuals.glm,%
+residuals.default,reshapeWide,reshapeLong,reshape,reorder,%
+rect.hclust,read.ftable,r2dtable,quasipoisson,quasibinomial,%
+quantile.default,quade.test,qqnorm.default,qbirthday,prop.trend.test,%
+prop.test,promax,print.ts,print.terms,print.logLik,%
+print.lm,print.integrate,print.infl,print.glm,print.ftable,%
+print.formula,print.family,print.density,printCoefmat,print.coefmat,%
+print.anova,princomp,predict.poly,predict.mlm,predict.lm,%
+predict.glm,prcomp,PP.test,ppr,power.t.test,%
+power.prop.test,power.anova.test,polym,poisson.test,plot.TukeyHSD,%
+plot.ts,plot.stepfun,plot.spec.phase,plot.spec.coherency,plot.spec,%
+plot.mlm,plot.lm,plot.ecdf,plot.density,plclust,%
+pbirthday,pairwise.wilcox.test,pairwise.t.test,pairwise.table,pairwise.prop.test,%
+p.adjust.methods,p.adjust,pacf,order.dendrogram,oneway.test,%
+numericDeriv,NLSstRtAsymptote,NLSstLfAsymptote,NLSstClosestX,NLSstAsymptotic,%
+nls.control,nls,nlminb,naresid,naprint,%
+napredict,na.pass,na.omit,na.fail,na.exclude,%
+na.contiguous,na.action,mood.test,monthplot,model.weights,%
+model.tables,model.response,model.offset,model.matrix.lm,model.matrix.default,%
+model.matrix,model.frame.lm,model.frame.glm,model.frame.default,model.frame.aovlist,%
+model.frame,model.extract,medpolish,median.default,mcnemar.test,%
+mauchly.test,mauchley.test,mantelhaen.test,manova,makepredictcall,%
+make.link,makeARIMA,ls.print,ls.diag,logLik,%
+loess.smooth,loess.control,loess,loadings,lm.wfit.null,%
+lm.wfit,lm.influence,lm.fit.null,lm.fit,lines.ts,%
+line,lag.plot,lag,ks.test,ksmooth,%
+kruskal.test,knots,kmeans,kernel,kernapply,%
+KalmanSmooth,KalmanRun,KalmanLike,KalmanForecast,is.tskernel,%
+is.ts,is.stepfun,isoreg,is.mts,is.leaf,%
+is.empty.model,inverse.gaussian,interaction.plot,integrate,influence.measures,%
+HoltWinters,heatmap,hclust,hatvalues.lm,hatvalues,%
+glm.fit.null,glm.fit,glm.control,getInitial,get_all_vars,%
+friedman.test,fligner.test,fitted.values,fisher.test,filter,%
+factor.scope,factanal,expand.model.frame,estVar,embed,%
+eff.aovlist,ecdf,dummy.coef,drop.terms,drop.scope,%
+dmultinom,dist,diff.ts,diffinv,df.residual,%
+df.kernel,dfbeta,deriv.formula,deriv.default,deriv3.formula,%
+deriv3.default,deriv3,density.default,dendrapply,delete.response,%
+decompose,cutree,cpgram,cov.wt,cov2cor,%
+cor.test,cophenetic,cooks.distance,contr.treatment,contr.sum,%
+contr.SAS,contr.poly,contr.helmert,contrasts<-,constrOptim,%
+confint.default,confint,complete.cases,cmdscale,clearNames,%
+chisq.test,ccf,case.names,cancor,bw.ucv,%
+bw.SJ,bw.nrd0,bw.nrd,bw.bcv,Box.test,%
+biplot,binom.test,bartlett.test,bandwidth.kernel,as.ts,%
+as.stepfun,asOneSidedFormula,as.hclust,as.formula,as.dist,%
+as.dendrogram,ar.yw,ar.ols,ar.mle,ARMAtoMA,%
+ARMAacf,arima.sim,arima0.diag,arima0,arima,%
+ar.burg,ar,ansari.test,anova.mlm,anova.lmlist,%
+anova.lm,anovalist.lm,anova.glmlist,anova.glm,AIC,%
+aggregate.ts,aggregate.default,aggregate.data.frame,add.scope,addmargins,%
+acf2AR,acf%
+},%
+keywordstyle={[4]{\bf\color{RRecomdcolor}}},%
+%
+% --------------------------
+% Registration of package graphics [recommended or base]
+% --------------------------
+morekeywords={[5]xspline,text.default,stripchart,strheight,split.screen,%
+spineplot,smoothScatter,points.default,plot.xy,plot.window,%
+plot.new,plot.design,plot.default,pie,panel.smooth,%
+pairs.default,lines.default,layout.show,image.default,hist.default,%
+grconvertY,grconvertX,fourfoldplot,filled.contour,erase.screen,%
+dotchart,contour.default,co.intervals,close.screen,clip,%
+cdplot,boxplot.matrix,boxplot.default,barplot.default,axTicks,%
+axis.POSIXct,axis.Date,Axis,assocplot%
+},%
+keywordstyle={[5]{\bf\color{RRecomdcolor}}},%
+%
+% --------------------------
+% Registration of package grDevices [recommended or base]
+% --------------------------
+morekeywords={[6]xyz.coords,xyTable,xy.coords,xfig,X11.options,%
+X11Fonts,X11Font,Type1Font,trans3d,topo.colors,%
+tiff,terrain.colors,svg,setPS,setEPS,%
+savePlot,rgb2hsv,replayPlot,recordPlot,recordGraphics,%
+quartz.options,quartzFonts,quartzFont,quartz,ps.options,%
+postscriptFonts,postscriptFont,png,pdf.options,pdfFonts,%
+pdf,nclass.Sturges,nclass.scott,nclass.FD,n2mfrow,%
+make.rgb,jpeg,Hershey,heat.colors,hcl,%
+grey.colors,gray.colors,graphics.off,getGraphicsEvent,extendrange,%
+embedFonts,dev.size,dev.set,dev.print,dev.prev,%
+dev.off,dev.next,dev.new,dev.list,dev.interactive,%
+deviceIsInteractive,dev.cur,dev.copy2pdf,dev.copy2eps,dev.copy,%
+dev.control,devAskNewPage,densCols,convertColor,contourLines,%
+colorspaces,colorRampPalette,colorRamp,colorConverter,col2rgb,%
+cm.colors,CIDFont,check.options,cairo_ps,cairo_pdf,%
+boxplot.stats,bmp,blues9,bitmap,as.graphicsAnnot%
+},%
+keywordstyle={[6]{\bf\color{RRecomdcolor}}},%
+%
+% --------------------------
+% Registration of package utils [recommended or base]
+% --------------------------
+morekeywords={[7]zip.file.extract,wsbrowser,write.table,write.socket,write.csv2,%
+write.csv,vignette,View,url.show,URLencode,%
+URLdecode,upgrade,update.packageStatus,update.packages,unzip,%
+untar,unstack,type.convert,txtProgressBar,toLatex,%
+toBibtex,timestamp,tar,tail.matrix,tail,%
+SweaveSyntConv,SweaveSyntaxNoweb,SweaveSyntaxLatex,SweaveHooks,Sweave,%
+summaryRprof,strOptions,str,Stangle,stack,%
+setTxtProgressBar,setRepositories,setBreakpoint,sessionInfo,select.list,%
+savehistory,RweaveTryStop,RweaveLatexWritedoc,RweaveLatexSetup,RweaveLatexOptions,%
+RweaveLatexFinish,RweaveLatex,RweaveEvalWithOpt,RweaveChunkPrefix,RtangleWritedoc,%
+RtangleSetup,Rtangle,rtags,RSiteSearch,RShowDoc,%
+Rprofmem,Rprof,remove.packages,relist,recover,%
+read.table,read.socket,read.fwf,read.fortran,read.DIF,%
+read.delim2,read.delim,read.csv2,read.csv,readCitationFile,%
+rc.status,rc.settings,rc.options,rc.getOption,promptPackage,%
+promptData,personList,person,packageStatus,package.skeleton,%
+packageDescription,package.contents,old.packages,object.size,nsl,%
+normalizePath,news,new.packages,modifyList,mirror2html,%
+memory.size,memory.limit,make.socket,makeRweaveLatexCodeRunner,make.packages.html,%
+ls.str,lsf.str,localeToCharset,loadhistory,limitedLabels,%
+is.relistable,install.packages,installed.packages,index.search,history,%
+help.start,help.search,help.request,head.matrix,head,%
+glob2rx,getTxtProgressBar,getS3method,getFromNamespace,getCRANmirrors,%
+getAnywhere,formatUL,formatOL,flush.console,fixInNamespace,%
+findLineNum,file_test,file.edit,dump.frames,download.packages,%
+download.file,de.setup,de.restore,de.ncols,data.entry,%
+CRAN.packages,count.fields,contrib.url,compareVersion,combn,%
+close.socket,citHeader,citFooter,citEntry,citation,%
+chooseCRANmirror,checkCRAN,capture.output,bug.report,browseVignettes,%
+browseURL,browseEnv,available.packages,assignInNamespace,as.roman,%
+as.relistable,as.personList,as.person,aspell,argsAnywhere,%
+alarm%
+},%
+keywordstyle={[7]{\bf\color{RRecomdcolor}}},%
+%
+% --------------------------
+% Registration of package datasets [recommended or base]
+% --------------------------
+morekeywords={[8]WWWusage,WorldPhones,women,warpbreaks,volcano,%
+VADeaths,uspop,USPersonalExpenditure,USJudgeRatings,USArrests,%
+USAccDeaths,UKgas,UKDriverDeaths,UCBAdmissions,trees,%
+treering,ToothGrowth,Titanic,Theoph,swiss,%
+sunspot.year,sunspots,sunspot.month,state.x77,state.region,%
+state.name,state.division,state.center,state.area,state.abb,%
+stack.x,stackloss,stack.loss,sleep,Seatbelts,%
+rock,rivers,randu,quakes,Puromycin,%
+pressure,presidents,precip,PlantGrowth,OrchardSprays,%
+Orange,occupationalStatus,nottem,Nile,nhtemp,%
+mtcars,morley,mdeaths,lynx,longley,%
+Loblolly,LifeCycleSavings,lh,ldeaths,LakeHuron,%
+JohnsonJohnson,islands,iris3,iris,InsectSprays,%
+infert,Indometh,Harman74.cor,Harman23.cor,HairEyeColor,%
+freeny.y,freeny.x,freeny,Formaldehyde,fdeaths,%
+faithful,EuStockMarkets,eurodist,euro.cross,euro,%
+esoph,DNase,discoveries,crimtab,CO2,%
+co2,chickwts,ChickWeight,cars,BOD,%
+BJsales.lead,BJsales,beaver2,beaver1,austres,%
+attitude,attenu,anscombe,airquality,AirPassengers,%
+airmiles,ability.cov%
+},%
+keywordstyle={[8]{\bf\color{RRecomdcolor}}},%
+%
+% --------------------------
+% Registration of package methods [recommended or base]
+% --------------------------
+morekeywords={[9]validSlotNames,validObject,unRematchDefinition,trySilent,tryNew,%
+traceOn,traceOff,testVirtual,testInheritedMethods,superClassDepth,%
+Summary,substituteFunctionArgs,substituteDirect,slotsFromS3,slotNames,%
+slot<-,slot,sigToEnv,SignatureMethod,signature,%
+showMlist,showMethods,showExtends,showDefault,showClass,%
+setValidity,setReplaceMethod,setPrimitiveMethods,setPackageName,setOldClass,%
+setMethod,setIs,setGroupGeneric,setGenericImplicit,setGeneric,%
+setDataPart,setClassUnion,setClass,setAs,sessionData,%
+selectSuperClasses,selectMethod,seemsS4Object,sealClass,S3Part<-,%
+S3Part,S3Class<-,S3Class,resetGeneric,resetClass,%
+requireMethods,representation,removeMethodsObject,removeMethods,removeMethod,%
+removeGeneric,removeClass,rematchDefinition,registerImplicitGenerics,reconcilePropertiesAndPrototype,%
+rbind2,Quote,prototype,promptMethods,promptClass,%
+prohibitGeneric,possibleExtends,packageSlot<-,packageSlot,newEmptyObject,%
+newClassRepresentation,newBasic,mlistMetaName,missingArg,methodsPackageMetaName,%
+MethodsListSelect,MethodsList,method.skeleton,methodSignatureMatrix,MethodAddCoerce,%
+metaNameUndo,mergeMethods,Math2,matchSignature,makeStandardGeneric,%
+makePrototypeFromClassDef,makeMethodsList,makeGeneric,makeExtends,makeClassRepresentation,%
+Logic,loadMethod,listFromMlist,listFromMethods,linearizeMlist,%
+languageEl<-,languageEl,isXS3Class,isVirtualClass,isSealedMethod,%
+isSealedClass,isGroup,isGrammarSymbol,isGeneric,isClassUnion,%
+isClassDef,isClass,insertMethod,initialize,inheritedSlotNames,%
+implicitGeneric,hasMethods,hasMethod,hasArg,getVirtual,%
+getValidity,getSubclasses,getSlots,getPrototype,getProperties,%
+getPackageName,getMethodsMetaData,getMethodsForDispatch,getMethods,getMethod,%
+getGroupMembers,getGroup,getGenerics,getGeneric,getFunction,%
+getExtends,getDataPart,getClassPackage,getClassName,getClasses,%
+getClassDef,getClass,getAllSuperClasses,getAllMethods,getAccess,%
+generic.skeleton,functionBody<-,functionBody,formalArgs,fixPre1.8,%
+findUnique,findMethodSignatures,findMethods,findMethod,findFunction,%
+findClass,finalDefaultMethod,extends,existsMethod,existsFunction,%
+emptyMethodsList,empty.dump,elNamed<-,elNamed,el<-,%
+el,dumpMethods,dumpMethod,doPrimitiveMethod,defaultPrototype,%
+defaultDumpName,conformMethod,Complex,completeSubclasses,completeExtends,%
+completeClassDefinition,Compare,coerce<-,coerce,classMetaName,%
+classesToAM,checkSlotAssignment,cbind2,canCoerce,callNextMethod,%
+callGeneric,cacheMethod,cacheMetaData,cacheGenericsMetaData,body<-,%
+balanceMethodsList,assignMethodsMetaData,assignClassDef,asMethodDefinition,as<-,%
+Arith,allNames,allGenerics,addNextMethod%
+},%
+keywordstyle={[9]{\bf\color{RRecomdcolor}}},%
+%
+% --------------------------
+% Registration of package base [recommended or base]
+% --------------------------
+morekeywords={[10]xzfile,xtfrm.Surv,xtfrm.POSIXlt,xtfrm.POSIXct,xtfrm.numeric_version,%
+xtfrm.factor,xtfrm.default,xtfrm.Date,xtfrm,xpdrows.data.frame,%
+write.table0,writeLines,write.dcf,writeChar,writeBin,%
+withVisible,withRestarts,within.list,within.data.frame,within,%
+with.default,withCallingHandlers,with,which.min,which.max,%
+weekdays.POSIXt,weekdays.Date,weekdays,version,Vectorize,%
+utf8ToInt,upper.tri,unz,untracemem,unsplit,%
+unserialize,unlockBinding,unloadNamespace,unix.time,units.difftime,%
+units<-.difftime,units<-,units,unique.POSIXlt,unique.numeric_version,%
+unique.matrix,unique.default,unique.data.frame,unique.array,tryCatch,%
+trunc.POSIXt,trunc.Date,truncate.connection,truncate,transform.default,%
+transform.data.frame,tracingState,tracemem,toupper,toString.default,%
+toString,topenv,tolower,textConnectionValue,textConnection,%
+testPlatformEquivalence,tempdir,t.default,t.data.frame,tcrossprod,%
+taskCallbackManager,T,Sys.which,Sys.unsetenv,Sys.umask,%
+Sys.timezone,Sys.time,system.time,system.file,sys.status,%
+sys.source,Sys.sleep,Sys.setlocale,Sys.setenv,sys.save.image,%
+Sys.readlink,Sys.putenv,sys.parents,sys.parent,sys.on.exit,%
+sys.nframe,Sys.localeconv,sys.load.image,Sys.info,Sys.glob,%
+Sys.getpid,Sys.getlocale,Sys.getenv,sys.function,sys.frames,%
+sys.frame,Sys.Date,Sys.chmod,sys.calls,sys.call,%
+symbol.For,symbol.C,suppressWarnings,suppressPackageStartupMessages,suppressMessages,%
+summary.table,Summary.POSIXlt,summary.POSIXlt,Summary.POSIXct,summary.POSIXct,%
+Summary.numeric_version,summary.matrix,Summary.factor,summary.factor,Summary.difftime,%
+summary.default,Summary.Date,summary.Date,Summary.data.frame,summary.data.frame,%
+summary.connection,substring<-,substr<-,subset.matrix,subset.default,%
+subset.data.frame,strwrap,strtrim,strptime,strftime,%
+storage.mode<-,storage.mode,stopifnot,stdout,stdin,%
+stderr,standardGeneric,srcref,srcfilecopy,srcfile,%
+sQuote,sprintf,split.POSIXct,split.default,split<-.default,%
+split.Date,split.data.frame,split<-.data.frame,split<-,source.url,%
+sort.POSIXlt,sort.list,sort.int,sort.default,solve.qr,%
+solve.default,socketSelect,socketConnection,slice.index,sink.number,%
+simpleWarning,simpleMessage,simpleError,simpleCondition,signalCondition,%
+shQuote,showConnections,setTimeLimit,setSessionTimeLimit,set.seed,%
+setNamespaceInfo,setHook,setCConverterStatus,serialize,seq.POSIXt,%
+seq_len,seq.int,seq.default,seq.Date,seq_along,%
+seek.connection,seek,scan.url,scale.default,saveNamespaceImage,%
+save.image,sample.int,R.version.string,R.Version,R.version,%
+R_system_version,rowSums,rowsum.default,rowsum.data.frame,row.names.default,%
+row.names<-.default,row.names.data.frame,row.names<-.data.frame,rownames<-,row.names<-,%
+row.names,rowMeans,round.POSIXt,round.Date,RNGversion,%
+R.home,rev.default,retracemem,restartFormals,restartDescription,%
+rep.POSIXlt,rep.POSIXct,rep.numeric_version,replicate,rep.int,%
+rep.factor,rep.Date,removeTaskCallback,removeCConverter,registerS3methods,%
+registerS3method,reg.finalizer,Reduce,read.table.url,readLines,%
+read.dcf,readChar,readBin,rcond,rbind.data.frame,%
+rawToChar,rawToBits,rawShift,rawConnectionValue,rawConnection,%
+raw,rapply,range.default,quarters.POSIXt,quarters.Date,%
+quarters,qr.X,qr.solve,qr.resid,qr.R,%
+qr.qy,qr.qty,qr.Q,qr.fitted,qr.default,%
+qr.coef,pushBackLength,pushBack,psigamma,prop.table,%
+proc.time,print.warnings,print.table,print.summary.table,print.srcref,%
+print.srcfile,print.simple.list,print.rle,print.restart,print.proc_time,%
+print.POSIXlt,print.POSIXct,print.packageInfo,print.octmode,print.numeric_version,%
+print.noquote,printNoClass,print.NativeRoutineList,print.listof,print.libraryIQR,%
+print.hexmode,print.function,print.factor,print.DLLRegisteredRoutines,print.DLLInfoList,%
+print.DLLInfo,print.difftime,print.default,print.Date,print.data.frame,%
+print.connection,print.condition,print.by,print.AsIs,prettyNum,%
+pos.to.env,Position,pmin.int,pmax.int,pipe,%
+pi,path.expand,parseNamespaceFile,parse.dcf,parent.frame,%
+parent.env<-,parent.env,packBits,package_version,packageStartupMessage,%
+packageHasNamespace,packageEvent,package.description,Ops.POSIXt,Ops.ordered,%
+Ops.numeric_version,Ops.factor,Ops.difftime,Ops.Date,Ops.data.frame,%
+open.srcfilecopy,open.srcfile,open.connection,open,on.exit,%
+oldClass<-,oldClass,nzchar,numeric_version,ngettext,%
+new.env,Negate,namespaceImportMethods,namespaceImportFrom,namespaceImportClasses,%
+namespaceImport,namespaceExport,names<-,mostattributes<-,months.POSIXt,%
+months.Date,months,month.name,month.abb,mode<-,%
+mget,message,merge.default,merge.data.frame,memory.profile,%
+mem.limits,memDecompress,memCompress,mean.POSIXlt,mean.POSIXct,%
+mean.difftime,mean.default,mean.Date,mean.data.frame,max.col,%
+mat.or.vec,Math.POSIXt,Math.factor,Math.difftime,Math.Date,%
+Math.data.frame,match.fun,match.call,match.arg,margin.table,%
+mapply,Map,manglePackageName,make.unique,make.names,%
+makeActiveBinding,lower.tri,logb,lockEnvironment,lockBinding,%
+loadURL,loadNamespace,loadingNamespaceInfo,loadedNamespaces,list.files,%
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/distr -r 605
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