[Depmix-commits] r615 - in pkg/depmixS4: . man vignettes

[noreply at r-forge.r-project.org]

Author: ingmarvisser
Date: 2014-02-03 23:02:05 +0100 (Mon, 03 Feb 2014)
New Revision: 615

Modified:
   pkg/depmixS4/DESCRIPTION
   pkg/depmixS4/man/responses.Rd
   pkg/depmixS4/vignettes/depmixS4.Rnw
   pkg/depmixS4/vignettes/depmixS4.bib
Log:
Fixed partially matched argument to check.attributes on ?responses, fixed a reference error in the vignette, upped version nr to 1.3-2

Modified: pkg/depmixS4/DESCRIPTION
===================================================================
--- pkg/depmixS4/DESCRIPTION	2013-12-11 10:33:02 UTC (rev 614)
+++ pkg/depmixS4/DESCRIPTION	2014-02-03 22:02:05 UTC (rev 615)
@@ -1,6 +1,6 @@
 Package: depmixS4
 Version: 1.3-2
-Date: 2013-12-11
+Date: 2014-02-03
 Title: Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
 Author: Ingmar Visser <i.visser at uva.nl>, Maarten Speekenbrink <m.speekenbrink at ucl.ac.uk>
 Maintainer: Ingmar Visser <i.visser at uva.nl>

Modified: pkg/depmixS4/man/responses.Rd
===================================================================
--- pkg/depmixS4/man/responses.Rd	2013-12-11 10:33:02 UTC (rev 614)
+++ pkg/depmixS4/man/responses.Rd	2014-02-03 22:02:05 UTC (rev 615)
@@ -154,7 +154,7 @@
 y <- rnorm(1000)
 mod <- GLMresponse(y~1)
 fm <- fit(mod)
-cat("Test gaussian fit: ", all.equal(getpars(fm),c(mean(y),sd(y)),check=FALSE))
+cat("Test gaussian fit: ", all.equal(getpars(fm),c(mean(y),sd(y)),check.attributes=FALSE))
 
 # poisson response model
 x <- abs(rnorm(1000,2))

Modified: pkg/depmixS4/vignettes/depmixS4.Rnw
===================================================================
--- pkg/depmixS4/vignettes/depmixS4.Rnw	2013-12-11 10:33:02 UTC (rev 614)
+++ pkg/depmixS4/vignettes/depmixS4.Rnw	2014-02-03 22:02:05 UTC (rev 615)
@@ -25,7 +25,7 @@
 \Abstract{	
 
 	This introduction to the \proglang{R} package \pkg{depmixS4} is a
-	(slightly) modified version of \cite{Visser+Speekenbrink:2010},
+	(slightly) modified version of \cite{Visser2010},
 	published in the \emph{Journal of Statistical Software}.  Please
 	refer to that article when using \pkg{depmixS4}.  The current
 	version is 1.3-0; the version history and changes can be found in

Modified: pkg/depmixS4/vignettes/depmixS4.bib
===================================================================
--- pkg/depmixS4/vignettes/depmixS4.bib	2013-12-11 10:33:02 UTC (rev 614)
+++ pkg/depmixS4/vignettes/depmixS4.bib	2014-02-03 22:02:05 UTC (rev 615)
@@ -2,21 +2,22 @@
 %% http://bibdesk.sourceforge.net/
 
 
-%% Created for Ingmar Visser at 2012-06-12 11:37:41 +0200 
+%% Created for Ingmar Visser at 2014-02-03 22:50:18 +0100 
 
 
 %% Saved with string encoding Unicode (UTF-8) 
 
+
+
 @article{giudici2000,
-  title={Likelihood-Ratio Tests for Hidden Markov Models},
-  author={Giudici, Paolo and Ryden, Tobias and Vandekerkhove, Pierre},
-  journal={Biometrics},
-  volume={56},
-  number={3},
-  pages={742--747},
-  year={2000},
-  publisher={Wiley Online Library}
-}
+	Author = {Giudici, Paolo and Ryden, Tobias and Vandekerkhove, Pierre},
+	Journal = {Biometrics},
+	Number = {3},
+	Pages = {742--747},
+	Publisher = {Wiley Online Library},
+	Title = {Likelihood-Ratio Tests for Hidden Markov Models},
+	Volume = {56},
+	Year = {2000}}
 
 @article{Dutilh2011,
 	Author = {Gilles Dutilh and Eric--Jan Wagenmakers and Ingmar Visser and Han L. J. van der Maas},
@@ -343,8 +344,9 @@
 	Title = {Hidden Markov Models for Individual Time Series},
 	Year = {2009}}
 
- at article{Visser+Speekenbrink:2010,
+ at article{Visser2010,
 	Author = {Ingmar Visser and Maarten Speekenbrink},
+	Date-Modified = {2014-02-03 21:50:17 +0000},
 	Journal = {Journal of Statistical Software},
 	Number = {7},
 	Pages = {1--21},