[Depmix-commits] r78 - in trunk: R data man

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Fri Mar 7 17:16:50 CET 2008 

Author: ingmarvisser
Date: 2008-03-07 17:16:50 +0100 (Fri, 07 Mar 2008)
New Revision: 78

Modified:
   trunk/R/allGenerics.R
   trunk/data/speed.rda
   trunk/man/depmix-class.Rd
   trunk/man/depmix.Rd
   trunk/man/depmix.fit.Rd
   trunk/man/response.Rd
Log:
Updated help files and other minor changes

Modified: trunk/R/allGenerics.R
===================================================================
--- trunk/R/allGenerics.R	2008-03-07 15:35:47 UTC (rev 77)
+++ trunk/R/allGenerics.R	2008-03-07 16:16:50 UTC (rev 78)
@@ -21,6 +21,12 @@
 
 setGeneric("logLik", function(object, ...) standardGeneric("logLik"))
 
+setGeneric("fit", function(object, ...) standardGeneric("fit"))
+
+setGeneric("predict", function(object, ...) standardGeneric("predict"))
+
+setGeneric("AIC", function(object, ..., k=2) standardGeneric("AIC"))
+
 setGeneric("BIC", function(object, ...) standardGeneric("BIC"))
 
 setGeneric("getdf",function(object) standardGeneric("getdf"))

Modified: trunk/data/speed.rda
===================================================================
--- trunk/data/speed.rda	2008-03-07 15:35:47 UTC (rev 77)
+++ trunk/data/speed.rda	2008-03-07 16:16:50 UTC (rev 78)
@@ -1,2708 +1,21 @@
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--300.9230029160184
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\ No newline at end of file

Modified: trunk/man/depmix-class.Rd
===================================================================
--- trunk/man/depmix-class.Rd	2008-03-07 15:35:47 UTC (rev 77)
+++ trunk/man/depmix-class.Rd	2008-03-07 16:16:50 UTC (rev 78)
@@ -6,7 +6,6 @@
 \title{Class "depmix"}
 \description{A \code{\link{depmix}} model.}
 \usage{
-	\S4method{fit}{depmix}(object)
 	\S4method{posterior}{depmix}(object)
 }
 \arguments{

Modified: trunk/man/depmix.Rd
===================================================================
--- trunk/man/depmix.Rd	2008-03-07 15:35:47 UTC (rev 77)
+++ trunk/man/depmix.Rd	2008-03-07 16:16:50 UTC (rev 78)
@@ -3,9 +3,24 @@
 
 \alias{depmix}
 \alias{logLik}
+\alias{logLik,depmix-method}
 \alias{AIC}
+\alias{AIC,depmix-method}
 \alias{BIC}
+\alias{BIC,depmix-method}
 
+\alias{npar}
+\alias{npar,depmix-method}
+
+\alias{freepars}
+\alias{freepars,depmix-method}
+
+\alias{setpars}
+\alias{setpars,depmix-method}
+
+\alias{getpars}
+\alias{getpars,depmix-method}
+
 \title{Dependent Mixture Model Specifiction}
 
 \description{
@@ -174,7 +189,6 @@
 	depmix(list(rt~1,corr~1),data=speed,nstates=2,family=list(gaussian(),multinomial()))
 	
 }
-\author{Ingmar Visser}
 \keyword{models}
 
 

Modified: trunk/man/depmix.fit.Rd
===================================================================
--- trunk/man/depmix.fit.Rd	2008-03-07 15:35:47 UTC (rev 77)
+++ trunk/man/depmix.fit.Rd	2008-03-07 16:16:50 UTC (rev 78)
@@ -15,10 +15,9 @@
 \usage{
 	
 	\S4method{fit}{depmix}(object, w=NULL, fixed=NULL, equal=NULL, conrows=NULL,
-		conrows.upper=0, conrows.lower=0, method=c("em","donlp"),...)
-	
-	\S4method{llratio}{depmix}{object,object}
-	
+		conrows.upper=0, conrows.lower=0, method=NULL,...)
+		
+	\S4methods{llratio}{depmix}(object,object,...)
 }
 \arguments{
 	\item{object}{An object of class "depmix".}

Modified: trunk/man/response.Rd
===================================================================
--- trunk/man/response.Rd	2008-03-07 15:35:47 UTC (rev 77)
+++ trunk/man/response.Rd	2008-03-07 16:16:50 UTC (rev 78)
@@ -4,6 +4,8 @@
 \alias{predict,response-method}
 \alias{dens,response-method}
 \alias{npar,response-method}
+\alias{transInit}
+\alias{GLMresponse}
 \alias{transInit,response-method}
 \alias{GLMresponse,response-method}
 \title{Methods for creating depmix response models}
@@ -15,7 +17,7 @@
 	transInit(formula, family=multinomial(), data, nstates, 
 		pstart=NULL, prob=TRUE, fixed=NULL)
 	
-	\S4methods{npar}{response}(object)
+	\S4methods{npar}{response}(object,...)
 }
 \arguments{
 	\item{object}{An object of class \code{response} or one of its
@@ -25,6 +27,7 @@
 		gaussian() are allowed options.}
 	\item{data}{An optional data.frame to interpret the variables from the 
 		formula argument in.}
+	\item{nstates}{The number of states of the model.}
 	\item{pstart}{Starting values for the coefficients and other
 		parameters, ie the standard deviation for the gaussian() family.}
 	\item{fixed}{Logical vector indicating which paramters are to be fixed.}

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