[Depmix-commits] r189 - trunk/man

[noreply at r-forge.r-project.org]

Author: ingmarvisser
Date: 2008-06-25 16:42:17 +0200 (Wed, 25 Jun 2008)
New Revision: 189

Modified:
   trunk/man/depmix-internal.Rd
   trunk/man/depmix-methods.Rd
   trunk/man/depmix.fitted-class.Rd
   trunk/man/mix.fitted-class.Rd
   trunk/man/responses.Rd
   trunk/man/simulate.Rd
Log:
Solved various codoc issues

Modified: trunk/man/depmix-internal.Rd
===================================================================
--- trunk/man/depmix-internal.Rd	2008-06-25 14:03:51 UTC (rev 188)
+++ trunk/man/depmix-internal.Rd	2008-06-25 14:42:17 UTC (rev 189)
@@ -20,6 +20,10 @@
 \alias{viterbi2}
 \alias{viterbi.fb}
 
+\alias{nlin}
+\alias{nlin,depmix.fitted-method}
+\alias{nlin,mix.fitted-method}
+
 \alias{dens,GLMresponse-method}
 \alias{dens,BINOMresponse-method}
 \alias{dens,NORMresponse-method}

Modified: trunk/man/depmix-methods.Rd
===================================================================
--- trunk/man/depmix-methods.Rd	2008-06-25 14:03:51 UTC (rev 188)
+++ trunk/man/depmix-methods.Rd	2008-06-25 14:42:17 UTC (rev 189)
@@ -19,6 +19,8 @@
 \alias{freepars}
 \alias{freepars,depmix-method}
 \alias{freepars,mix-method}
+\alias{freepars,depmix.fitted-method}
+\alias{freepars,mix.fitted-method}
 
 \alias{setpars}
 \alias{setpars,depmix-method}

Modified: trunk/man/depmix.fitted-class.Rd
===================================================================
--- trunk/man/depmix.fitted-class.Rd	2008-06-25 14:03:51 UTC (rev 188)
+++ trunk/man/depmix.fitted-class.Rd	2008-06-25 14:42:17 UTC (rev 189)
@@ -54,6 +54,10 @@
 		\item{\code{conMat}:}{The linear constraint matrix, which has zero rows
 			if there were no constraints.}
 		
+		\item{\code{lin.lower}}{The lower bounds on the linear constraints.}
+
+		\item{\code{lin.upper}}{The upper bounds on the linear constraints.}		
+		
 		\item{\code{posterior}:}{Posterior (Viterbi) state sequence (not
 			implemented currently).}
 	}

Modified: trunk/man/mix.fitted-class.Rd
===================================================================
--- trunk/man/mix.fitted-class.Rd	2008-06-25 14:03:51 UTC (rev 188)
+++ trunk/man/mix.fitted-class.Rd	2008-06-25 14:42:17 UTC (rev 189)
@@ -44,6 +44,10 @@
 		\item{\code{conMat}:}{The linear constraint matrix, which has zero rows
 			if there were no constraints.}
 		
+		\item{\code{lin.lower}}{The lower bounds on the linear constraints.}
+
+		\item{\code{lin.upper}}{The upper bounds on the linear constraints.}
+			
 		\item{\code{posterior}:}{Posterior (Viterbi) state sequence (not
 			implemented currently).}
 	}

Modified: trunk/man/responses.Rd
===================================================================
--- trunk/man/responses.Rd	2008-06-25 14:03:51 UTC (rev 188)
+++ trunk/man/responses.Rd	2008-06-25 14:42:17 UTC (rev 189)
@@ -9,6 +9,8 @@
 \alias{NORMresponse}
 \alias{POISSONresponse}
 
+\alias{show,MVNresponse-method}
+
 \title{Response models currently implemented in depmix.}
 
 \description{Depmix contains a number of default response models. We provide a
@@ -141,7 +143,7 @@
 	
 	glm(cbind(ss,1-ss)~x, family=binomial)
 	
-	x <- rnorm(1000,2)^2
+	x <- abs(rnorm(1000,2))
 	
 	res <- rpois(1000,x)
 	

Modified: trunk/man/simulate.Rd
===================================================================
--- trunk/man/simulate.Rd	2008-06-25 14:03:51 UTC (rev 188)
+++ trunk/man/simulate.Rd	2008-06-25 14:42:17 UTC (rev 189)
@@ -9,6 +9,13 @@
 \alias{simulate,GLMresponse-method}
 \alias{simulate,transInit-method}
 
+\alias{simulate,BINOMresponse-method}
+\alias{simulate,GAMMAresponse-method}
+\alias{simulate,MULTINOMresponse-method}
+\alias{simulate,MVNresponse-method}
+\alias{simulate,NORMresponse-method}
+\alias{simulate,POISSONresponse-method}
+
 \title{Methods to simulate from depmix models}
 
 \description{