[CHNOSZ-commits] r783 - in pkg/CHNOSZ: . R man

[noreply at r-forge.r-project.org]

Author: jedick
Date: 2023-05-15 11:04:46 +0200 (Mon, 15 May 2023)
New Revision: 783

Modified:
   pkg/CHNOSZ/DESCRIPTION
   pkg/CHNOSZ/R/diagram.R
   pkg/CHNOSZ/man/add.OBIGT.Rd
   pkg/CHNOSZ/man/solubility.Rd
   pkg/CHNOSZ/man/swap.basis.Rd
Log:
Minor changes


Modified: pkg/CHNOSZ/DESCRIPTION
===================================================================
--- pkg/CHNOSZ/DESCRIPTION	2023-03-21 06:36:57 UTC (rev 782)
+++ pkg/CHNOSZ/DESCRIPTION	2023-05-15 09:04:46 UTC (rev 783)
@@ -1,6 +1,6 @@
-Date: 2023-03-21
+Date: 2023-05-15
 Package: CHNOSZ
-Version: 2.0.0-2
+Version: 2.0.0-3
 Title: Thermodynamic Calculations and Diagrams for Geochemistry
 Authors at R: c(
     person("Jeffrey", "Dick", , "j3ffdick at gmail.com", role = c("aut", "cre"),

Modified: pkg/CHNOSZ/R/diagram.R
===================================================================
--- pkg/CHNOSZ/R/diagram.R	2023-03-21 06:36:57 UTC (rev 782)
+++ pkg/CHNOSZ/R/diagram.R	2023-05-15 09:04:46 UTC (rev 783)
@@ -137,7 +137,7 @@
     } else message(paste("diagram: plotting", plotvar, " / n.balance"))
   }
 
-  ## Use molality instead of activity if the affinity calculation include ionic strength 20171101
+  ## Use molality instead of activity if the affinity calculation includes ionic strength 20171101
   molality <- "IS" %in% names(eout)
 
   ## When can normalize and as.residue be used

Modified: pkg/CHNOSZ/man/add.OBIGT.Rd
===================================================================
--- pkg/CHNOSZ/man/add.OBIGT.Rd	2023-03-21 06:36:57 UTC (rev 782)
+++ pkg/CHNOSZ/man/add.OBIGT.Rd	2023-05-15 09:04:46 UTC (rev 783)
@@ -84,7 +84,7 @@
 # Retrieve the data for this species using either name or formula
 info(info("lorem-ipsum"))
 info(info("C123"))
-# reset database
+# Reset database
 OBIGT()
 
 ## Using add.OBIGT():

Modified: pkg/CHNOSZ/man/solubility.Rd
===================================================================
--- pkg/CHNOSZ/man/solubility.Rd	2023-03-21 06:36:57 UTC (rev 782)
+++ pkg/CHNOSZ/man/solubility.Rd	2023-05-15 09:04:46 UTC (rev 783)
@@ -81,7 +81,7 @@
 \code{demo("solubility")} shows solubilities of CO\s{2} and calcite calculated as a function of pH and T; note that for calcite, the \code{dissociate} argument is set to TRUE.
 \code{demo("gold")} shows solubility calculations for Au in aqueous solutions with hydroxide, chloride, and hydrosulfide complexes.
 
-Solubility calculations for multiple minerals are used for generating isosolubility (aka. equisolubility) lines in \code{demo("Pourbaix")} and \code{demo("zinc")}.
+Solubility calculations for multiple minerals are used for generating isosolubility (aka. equisolubility) lines in \code{demo("Pourbaix")} and \code{demo("minsol")}.
 The latter demo combines the calculation of solubilities with a \code{\link{mosaic}} calculation to account for the speciation of aqueous sulfur.
 
 Whereas \code{solubility} yields a stable equilibrium condition (the affinities of formation reactions of aqueous species are zero), \code{\link{equilibrate}} generates metastable equilibrium (the affinities of formation reactions are equal to each other, but not necessarily zero).

Modified: pkg/CHNOSZ/man/swap.basis.Rd
===================================================================
--- pkg/CHNOSZ/man/swap.basis.Rd	2023-03-21 06:36:57 UTC (rev 782)
+++ pkg/CHNOSZ/man/swap.basis.Rd	2023-05-15 09:04:46 UTC (rev 783)
@@ -40,11 +40,11 @@
 \examples{
 \dontshow{reset()}
 ## Swapping basis species
-# start with a preset basis definition
+# Start with a preset basis definition
 b1 <- basis("CHNOS+")
-# swap H2(aq) for O2(gas)
+# Swap H2(aq) for O2(gas)
 b2 <- swap.basis("O2", "H2")
-# put oxygen back in
+# Put oxygen back in
 b3 <- swap.basis("H2", "oxygen")
 
 # Interconversion of chemical potentials of elements and