[CHNOSZ-commits] r173 - in pkg/CHNOSZ: . R data demo inst inst/extdata/abundance man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Fri Feb 24 03:07:50 CET 2017
Author: jedick
Date: 2017-02-24 03:07:50 +0100 (Fri, 24 Feb 2017)
New Revision: 173
Added:
pkg/CHNOSZ/inst/extdata/abundance/TBD+05.csv
Removed:
pkg/CHNOSZ/inst/extdata/abundance/stress.csv
Modified:
pkg/CHNOSZ/DESCRIPTION
pkg/CHNOSZ/R/read.expr.R
pkg/CHNOSZ/R/util.data.R
pkg/CHNOSZ/data/protein.csv
pkg/CHNOSZ/data/refs.csv
pkg/CHNOSZ/demo/sources.R
pkg/CHNOSZ/inst/NEWS
pkg/CHNOSZ/man/add.protein.Rd
pkg/CHNOSZ/man/extdata.Rd
pkg/CHNOSZ/man/read.expr.Rd
Log:
remove stress() and stress.csv
Modified: pkg/CHNOSZ/DESCRIPTION
===================================================================
--- pkg/CHNOSZ/DESCRIPTION 2017-02-23 13:52:07 UTC (rev 172)
+++ pkg/CHNOSZ/DESCRIPTION 2017-02-24 02:07:50 UTC (rev 173)
@@ -1,6 +1,6 @@
-Date: 2017-02-23
+Date: 2017-02-24
Package: CHNOSZ
-Version: 1.0.8-62
+Version: 1.0.8-63
Title: Chemical Thermodynamics and Activity Diagrams
Author: Jeffrey Dick
Maintainer: Jeffrey Dick <j3ffdick at gmail.com>
Modified: pkg/CHNOSZ/R/read.expr.R
===================================================================
--- pkg/CHNOSZ/R/read.expr.R 2017-02-23 13:52:07 UTC (rev 172)
+++ pkg/CHNOSZ/R/read.expr.R 2017-02-24 02:07:50 UTC (rev 173)
@@ -1,25 +1,8 @@
# CHNOSZ/read.expr.R
# protein abundance and localization data from experiments
-# stress: protein identities from stress.csv
# yeastgfp: protein localization and abundance from yeastgfp.csv
# read.expr: protein abundance from other files (including in extdata/abundance)
-stress <- function(condition, organism) {
- # get names of proteins from a stress response experiment
- # extracted from get.protein() 20120519 jmd
- # read the data file
- stressfile <- system.file("extdata/abundance/stress.csv", package="CHNOSZ")
- stressdat <- read.csv(stressfile, check.names=FALSE, as.is=TRUE)
- imatch <- which(colnames(stressdat) == condition & stressdat[1, ] == organism)
- if(length(imatch)==0) stop("didn't find proteins for ", organism, " in ", condition)
- protein <- stressdat[3:nrow(stressdat), imatch]
- protein <- protein[!is.na(protein)]
- # stressdat[2, ]: the literature source of the data
- message("stress: found ", length(protein), " proteins for ", organism, " in ", condition, " from ", stressdat[2, imatch])
- out <- list(protein=protein, abundance=rep(1, length(protein)))
- return(out)
-}
-
yeastgfp <- function(location=NULL, exclusive=TRUE) {
# return a list of ORFs and protein abundances for a subcellular location
# using data from the YeastGFP project
Modified: pkg/CHNOSZ/R/util.data.R
===================================================================
--- pkg/CHNOSZ/R/util.data.R 2017-02-23 13:52:07 UTC (rev 172)
+++ pkg/CHNOSZ/R/util.data.R 2017-02-24 02:07:50 UTC (rev 173)
@@ -190,13 +190,8 @@
# count the times each source is listed in protein.csv
npr <- sapply(x$key, function(x) length(which(thermo$protein$ref==x)) )
npr[npr==0] <- ""
- # count the times each source is listed in stress.csv
- stressfile <- system.file("extdata/abundance/stress.csv", package="CHNOSZ")
- stressdat <- read.csv(stressfile, check.names=FALSE, as.is=TRUE)
- nst <- sapply(x$key, function(x) length(which(stressdat[2,]==x)) )
- nst[nst==0] <- ""
# append the counts to the table to be shown
- x <- c(x,list(ns1=ns1,npr=npr,nst=nst))
+ x <- c(x,list(ns1=ns1,npr=npr))
# title to display for web page
title <- "Sources of Thermodynamic Data in CHNOSZ"
### the following is adapted from print.findFn in package 'sos'
@@ -222,8 +217,7 @@
.cat("<h3>Click on column headers to sort</h3>")
.cat("<h3>Columns 'n..' give number of times each reference appears in data tables:</h3>")
.cat("ns1: 'ref1' and 'ref2' in data/OBIGT.csv<br>")
- .cat("npr: 'ref' in data/protein.csv<br>")
- .cat("nst: second row in data/stress.csv<br><p>")
+ .cat("npr: 'ref' in data/protein.csv<br><p>")
### start table and headers
.cat("<table class='sortable' border='1'>\n<thead>")
.cat("<tr>")
Modified: pkg/CHNOSZ/data/protein.csv
===================================================================
--- pkg/CHNOSZ/data/protein.csv 2017-02-23 13:52:07 UTC (rev 172)
+++ pkg/CHNOSZ/data/protein.csv 2017-02-24 02:07:50 UTC (rev 173)
@@ -1,210 +1,209 @@
protein,organism,ref,abbrv,chains,Ala,Cys,Asp,Glu,Phe,Gly,His,Ile,Lys,Leu,Met,Asn,Pro,Gln,Arg,Ser,Thr,Val,Trp,Tyr
-O08452,PYRFU,BBA+03,O08452,1,28,5,33,23,20,45,12,25,19,27,4,21,20,7,14,21,16,31,26,37
-AMY,BACSU,BBA+03,P00691,1,49,1,44,23,20,51,16,35,30,36,10,54,23,29,24,55,45,32,14,28
-AMYA,PYRFU,BBA+03,P49067,1,26,2,35,66,37,44,14,41,48,59,12,24,28,15,35,33,12,59,17,41
-BPT1,BOVIN,BBA+03,P00974,1,6,6,2,2,4,6,0,2,4,2,1,3,4,1,6,1,3,1,0,4
-CYC,BOVIN,BBA+03,P62894,1,6,2,3,9,4,14,3,6,18,6,2,5,4,3,2,1,8,3,1,4
-LYSC,CHICK,BBA+03,P00698,1,12,8,7,2,3,12,1,6,6,8,2,14,2,3,11,10,7,6,6,3
-MYG,PHYCA,BBA+03,P02185,1,17,0,7,14,6,11,12,9,19,18,2,1,4,5,4,6,5,8,2,3
-NUC,STAAU,BBA+03,P00644,1,14,0,8,12,3,10,4,5,23,11,4,6,6,6,5,5,10,9,1,7
-RNAS1,BOVIN,BBA+03,P61823,1,12,8,5,5,3,3,4,3,10,2,4,10,4,7,4,15,10,9,0,6
-RNBR,BACAM,BBA+03,P00648,1,8,0,9,3,4,10,2,8,8,7,0,6,3,4,6,9,9,4,3,7
-RNH,ECOLI,BBA+03,P0A7Y4,1,14,3,7,12,2,14,5,7,11,12,4,7,5,8,10,4,10,9,6,5
-RNH,THET8,BBA+03,P29253,1,19,4,5,15,6,14,8,1,12,17,3,6,12,3,15,4,9,6,5,2
-RNT1,ASPOR,BBA+03,P00651,1,7,4,6,6,4,12,3,2,1,3,0,9,4,3,1,15,6,8,1,9
-CSG,HALJP,BBA+03,Q9C4B4,1,61,0,122,86,20,78,4,47,4,47,0,51,29,21,19,74,79,66,2,18
-CSG,HALSA,BBA+03,Q9HM69,1,54,0,113,70,18,77,2,41,15,44,7,56,21,27,19,76,85,68,2,23
-CSG,HALVO,BBA+03,P25062,1,59,0,89,67,13,83,2,48,4,49,5,43,19,21,14,85,108,65,3,16
-CSG,METFE,BBA+03,P27373,1,24,8,23,31,15,56,1,77,41,23,6,71,19,6,16,35,46,31,8,34
-CSG,METJA,BBA+03,Q58232,1,46,2,78,36,10,36,3,25,54,46,12,31,13,3,4,21,28,55,4,23
-CSG,METSC,BBA+03,P27374,1,24,8,23,31,15,56,1,74,41,23,8,71,19,6,16,35,46,32,8,34
-CSG,METVO,BBA+03,Q50833,1,75,0,64,41,13,41,0,26,46,49,11,26,9,8,3,30,37,52,3,19
-CSG,METTL,BBA+03,Q8X235,1,60,0,65,35,10,38,0,34,48,42,7,27,9,9,7,32,29,59,3,16
-CSG,METBU1,SNR+06,ZP_00562202.1,1,40,0,96,53,31,49,2,53,25,39,14,20,17,13,12,45,56,62,9,18
-CSG,METBU,BBA+03,Q12YZ7,1,5,1,20,20,11,26,5,29,14,18,3,32,10,8,4,23,8,28,1,12
-SLAP1,BACAN,BBA+03,P49051,1,95,0,42,70,22,51,2,23,106,51,7,38,21,24,3,36,74,100,5,15
-SLAP,ACEKI,BBA+03,P22258,1,65,0,59,25,20,51,3,35,57,58,4,62,16,19,14,36,71,92,4,45
-SLAP,AERSA,BBA+03,P35823,1,57,0,30,19,25,43,4,24,25,45,2,39,12,19,14,26,47,41,4,5
-SLAP,BACCI,BBA+03,P35824,1,159,9,98,76,51,167,17,61,73,114,11,66,88,46,108,117,125,132,19,49
-SLAP,GEOSE,BBA+03,P35825,1,135,0,83,63,40,71,5,53,109,80,3,74,28,31,21,69,156,131,4,42
-SLAP,CAMFE,BBA+03,P35827,1,127,0,84,26,28,84,4,68,68,67,12,73,4,4,2,82,119,71,2,14
-SLAP,CAUCR,BBA+03,P35828,1,203,0,53,9,31,124,3,40,11,76,3,60,8,20,8,75,190,94,2,15
-SLAP,LACAC,BBA+03,P35829,1,56,0,20,8,9,23,3,15,36,13,1,51,8,8,7,33,54,52,0,23
-SLAP,LACBR,BBA+03,Q05044,1,60,0,24,6,8,41,2,6,36,20,4,21,6,9,8,37,81,33,4,29
-SLAP,LACHE,BBA+03,P38059,1,45,0,24,12,11,24,3,21,41,12,3,38,13,10,5,30,52,42,0,23
-SLAP2,BACAN,BBA+03,P94217,1,70,0,62,45,26,76,8,40,86,62,1,57,23,21,9,51,71,99,4,22
-SLAP,BACLI,BBA+03,P49052,1,80,0,63,54,29,79,9,45,89,50,2,51,23,17,15,41,78,95,4,20
-POLG.VP4,POL1M,BBA+03,P03300,1,7,0,4,2,2,4,1,4,5,2,1,6,3,4,2,9,5,3,0,4
-POLG.VP2,POL1M,BBA+03,P03300,1,21,9,10,12,8,18,5,11,5,25,8,20,18,10,13,22,24,14,8,10
-POLG.VP3,POL1M,BBA+03,P03300,1,15,5,14,10,10,13,5,14,10,23,12,8,18,7,9,21,20,13,3,8
-POLG.VP1,POL1M,BBA+03,P03300,1,23,2,17,11,12,17,7,12,15,20,5,14,21,9,15,24,32,26,4,16
-POLG.2A,POL1M,BBA+03,P03300,1,12,6,7,9,5,16,6,8,3,8,4,8,4,7,8,8,6,10,1,13
-POLG.P2B,POL1M,BBA+03,P03300,1,6,2,4,5,2,5,0,12,7,12,1,4,2,4,2,7,12,5,2,3
-POLG.P2C,POL1M,BBA+03,P03300,1,22,10,15,20,14,12,8,25,23,25,13,20,15,19,19,27,15,16,4,7
-POLG.P3A,POL1M,BBA+03,P03300,1,7,2,5,4,2,4,1,7,6,6,2,4,4,7,3,3,6,9,1,4
-POLG.VPg,POL1M,BBA+03,P03300,1,2,0,0,0,0,2,0,1,3,1,0,2,3,1,1,0,3,2,0,1
-POLG.3C,POL1M,BBA+03,P03300,1,15,3,8,9,8,18,4,13,9,11,5,9,8,7,9,9,19,13,0,5
-POLG.RNA,POL1M,BBA+03,P03300,1,31,5,32,30,19,28,12,26,38,46,17,18,22,7,18,30,26,24,7,25
-FLAB1,AERPE,BBA+03,Q9YAN8,1,20,2,8,14,7,18,0,13,8,20,4,6,8,3,5,18,13,25,1,4
-FLAB2,AERPE,BBA+03,Q9YAN6,1,27,2,18,15,6,20,0,17,6,26,3,6,14,2,7,16,22,23,0,10
-FLAB1,METJA,BBA+03,Q58301,1,27,1,11,6,8,18,2,19,8,17,4,10,6,9,1,16,17,18,1,6
-FLAB2,METJA,BBA+03,Q58302,1,28,1,7,8,5,18,1,21,8,19,3,12,6,9,2,13,21,17,1,5
-FLAB3,METJA,BBA+03,Q58303,1,21,0,8,11,8,19,3,26,6,11,3,15,7,6,6,12,17,20,1,5
-FLA,BACSU,BBA+03,P02968,1,39,0,22,17,5,19,4,22,15,29,8,27,2,24,14,24,18,14,0,1
-FLAA,AQUPY,BBA+03,P46210,1,54,0,37,19,10,37,2,48,23,45,8,34,9,25,20,34,48,28,2,18
-FLAA,AQUAE,BBA+03,O67803,1,57,0,33,18,16,39,1,38,16,46,7,46,7,30,18,38,54,37,0,17
-FLJJ,CAUCR,BBA+03,P02969,1,40,0,23,7,5,24,2,13,10,35,5,19,7,18,12,17,22,16,1,0
-PST1,YEAST,BBA+03,YDR055W,1,28,4,17,8,18,28,2,26,33,39,0,36,3,12,1,83,35,23,1,3
-TSA1,YEAST,BBA+03,YML028W,1,19,2,11,15,11,13,2,13,14,17,0,8,11,6,6,8,13,18,3,5
-PRX1,YEAST,BBA+03,YBL064C,1,17,3,20,11,18,11,3,20,25,17,2,12,15,11,11,17,18,21,4,5
-DOT5,YEAST,BBA+03,YIL010W,1,14,2,10,19,10,10,3,12,25,18,2,11,12,7,12,20,8,16,0,4
-MOD5.M,YEAST,BBA+03,P07884-1,1,15,7,29,30,12,20,11,31,46,35,10,22,16,21,25,20,29,22,9,18
-MOD5.N,YEAST,BBA+03,P07884-2,1,15,6,29,30,12,18,11,31,44,32,9,21,15,21,25,20,29,22,9,18
-COX1,YEAST,BBA+03,P00401,1,44,1,13,9,44,43,16,49,10,68,21,27,25,9,9,43,31,38,10,24
-COX2,YEAST,BBA+03,P00410,1,15,4,13,16,11,12,5,25,8,24,6,7,13,8,4,13,14,19,5,14
-COX3,YEAST,BBA+03,P00420,1,22,2,5,7,16,19,15,18,2,36,13,9,9,4,7,16,20,25,9,15
-COX4,YEAST,BBA+03,P04037,1,6,3,10,9,1,13,4,6,9,11,2,5,10,4,4,6,10,11,2,4
-COX5A,YEAST,BBA+03,P00424,1,13,0,5,8,3,10,1,3,11,11,4,6,6,11,5,13,4,9,6,4
-COX5B,YEAST,BBA+03,P00425,1,8,0,4,11,4,11,1,5,13,15,2,9,8,6,6,7,8,6,6,4
-COX6,YEAST,BBA+03,P00427,1,11,1,9,16,7,1,1,2,7,11,0,4,5,3,7,5,3,9,0,6
-COX7,YEAST,BBA+03,P10174,1,8,0,0,0,3,1,1,6,6,6,0,2,5,3,3,3,2,4,2,4
-COX8,YEAST,BBA+03,P04039,1,4,1,1,1,7,4,2,2,6,2,0,1,3,1,1,1,1,6,0,3
-COX9,YEAST,BBA+03,P07255,1,4,0,2,3,3,5,1,6,6,3,3,1,1,0,4,2,3,3,3,2
-KC11,YEAST,BBA+03,P23291,1,31,4,28,25,17,35,17,23,37,48,12,33,30,72,26,30,24,18,4,24
-KC12,YEAST,BBA+03,P23292,1,34,3,29,25,16,40,19,21,38,44,12,39,28,61,26,37,23,20,4,27
-KC13,YEAST,BBA+03,P39962,1,24,13,34,21,19,28,18,35,37,35,11,47,28,28,31,46,20,16,4,29
-HRR25,YEAST,BBA+03,P29295,1,21,5,24,27,22,28,14,26,33,47,13,31,29,43,32,35,20,17,4,23
-GAL83,YEAST,BBA+03,Q04739,1,24,1,37,21,12,23,15,18,18,29,15,32,31,33,11,33,26,20,4,14
-SIP1,YEAST,BBA+03,P32578,1,49,6,60,47,27,33,35,43,48,70,19,61,45,32,42,118,55,43,4,26
-SIP2,YEAST,BBA+03,P34164,1,17,4,32,27,10,21,8,21,27,26,9,18,32,24,22,44,34,23,3,12
-GLRX1,YEAST,BBA+03,P25373,1,8,2,5,12,2,6,3,9,8,14,2,8,4,5,3,3,5,7,0,4
-GLRX2.C,YEAST,BBA+03,P17695,1,7,2,4,10,3,7,2,6,12,12,1,6,4,6,0,7,6,10,0,3
-GLRX2,YEAST,BBA+03,P17695,1,9,2,5,11,7,7,2,13,14,15,3,8,5,6,2,10,10,11,0,3
-GLRX3,YEAST,BBA+03,Q03835,1,17,5,16,32,19,12,7,17,15,23,5,16,12,15,8,27,13,14,2,10
-GLRX4,YEAST,BBA+03,P32642,1,18,2,16,26,16,10,3,17,16,19,4,9,11,15,8,22,10,16,2,4
-GLRX5,YEAST,BBA+03,Q02784,1,12,2,6,18,9,9,0,10,9,15,4,5,11,4,9,8,7,7,1,4
-GSHR.M,YEAST,BBA+03,P41921,1,33,5,24,35,17,43,15,32,42,34,9,28,14,11,18,29,26,45,4,19
-GSHR.C,YEAST,BBA+03,P41921,1,32,5,24,35,16,43,15,31,41,32,8,28,14,9,16,27,23,45,4,19
-GPD1,YEAST,BBA+03,Q00055,1,32,10,17,33,15,34,12,27,22,32,5,19,14,13,13,24,17,35,6,10
-GPD2,YEAST,BBA+03,P41911,1,32,7,21,30,16,29,21,31,26,44,8,19,17,18,21,23,25,34,5,13
-TRX1,YEAST,BBA+03,P22217,1,16,2,7,6,6,4,0,5,10,6,3,4,5,6,0,4,4,10,1,3
-TRX2,YEAST,BBA+03,P22803,1,15,2,7,6,5,5,0,5,9,5,3,2,4,4,1,9,4,12,1,4
-TRX3,YEAST,BBA+03,P25372,1,7,4,8,5,6,6,1,10,13,12,6,4,8,5,5,5,9,8,1,4
-TRXB1,YEAST,BBA+03,P29509,1,36,4,15,24,11,29,5,22,24,24,8,10,13,8,10,19,28,17,2,9
-TRXB2,YEAST,BBA+03,P38816,1,35,4,14,24,14,28,7,26,20,23,10,14,14,9,16,26,24,23,2,9
-AMPM1,YEAST,BBA+03,YLR244C,1,20,14,20,25,9,26,14,22,33,24,7,20,25,11,15,21,27,22,4,18
-AMPM2,YEAST,BBA+03,YBL091C,1,29,4,32,35,12,31,14,22,37,31,10,22,17,14,21,19,24,27,2,18
-EXG1,YEAST,BBA+03,YLR300W,1,25,7,37,25,17,31,10,24,14,34,5,27,13,18,15,27,18,19,15,27
-CLPX,ECOLI,BBA+03,P0A6H1,1,35,7,29,36,10,35,7,31,33,45,4,11,17,20,19,23,19,31,0,11
-CLPP,ECOLI,BBA+03,P0A6G7,1,16,2,10,16,8,16,6,16,7,19,12,7,8,10,13,13,10,11,0,7
-CLPA,ECOLI,BBA+03,P0ABH9,1,69,3,44,64,27,50,21,46,44,78,15,32,25,36,50,42,38,60,3,11
-HSLU,ECOLI,BBA+03,P0A6H5,1,42,2,27,46,10,24,7,38,30,40,14,15,17,23,29,22,21,28,3,5
-HSLV,ECOLI,BBA+03,P0A7B8,1,24,1,10,13,5,15,5,12,10,18,3,8,2,4,10,5,12,13,1,4
-FTSH,ECOLI,BBA+03,P0AAI3,1,59,2,37,50,25,58,9,40,37,51,25,26,36,22,43,32,27,50,5,10
-LON,ECOLI,BBA+03,P0A9M0,1,62,6,51,68,10,51,14,51,61,84,30,26,37,28,49,38,32,63,3,20
-AMY1,HORVU,BBA+03,P25718,1,47,4,37,13,15,44,13,23,22,25,12,17,17,12,15,21,17,28,16,16
-AMYB,HORVU,BBA+03,P16098,1,41,5,31,31,23,56,14,22,22,41,18,26,35,28,27,22,21,37,10,25
-GUB2,HORVU,BBA+03,P12257,1,43,2,6,6,15,33,7,11,9,17,11,24,18,10,8,22,15,30,4,15
-ALEU,HORVU,BBA+03,P05167,1,18,1,4,8,7,7,2,3,2,10,2,4,3,2,17,15,7,5,1,3
-RPOE,ECOLI,BBA+03,P0AGB6,1,17,1,12,16,7,8,1,12,7,18,4,7,8,9,18,14,6,18,1,7
-FLIA,ECOLI,BBA+03,P0AEM6,1,18,0,14,25,2,13,5,9,6,36,5,9,5,17,24,12,11,17,3,8
-RP32,ECOLI,BBA+03,P0AGB3,1,33,0,23,22,8,12,6,12,16,29,11,13,6,14,23,16,9,18,6,7
-RPOS,ECOLI,BBA+03,P13445,1,24,0,23,41,9,19,4,19,12,44,5,13,8,15,34,13,17,20,3,7
-RP54,ECOLI,BBA+03,P24255,1,31,3,36,42,10,18,9,30,19,59,10,14,21,38,26,36,33,26,5,11
-RPOD,ECOLI,BBA+03,P00579,1,49,3,54,71,15,24,9,43,34,54,25,19,19,30,46,29,38,34,4,13
-AMY1,ECOLI,BBA+03,P25718,1,58,4,55,25,29,58,19,22,31,56,15,24,31,42,27,39,45,29,25,25
-AMPM,ECOLI,BBA+03,P0AE18,1,14,7,17,22,6,22,9,26,18,16,9,8,11,5,13,12,16,24,1,8
-AMPM,PYRFU,BBA+03,P56218,1,30,0,12,29,8,22,6,29,26,26,9,9,14,5,14,6,13,24,1,12
-ALBU,BOVIN,BBA+03,P02769,1,47,35,40,59,27,16,17,14,59,61,4,14,28,20,23,28,33,36,2,20
-OVAL,CHICK,BBA+03,P01012,1,35,6,14,33,20,19,7,25,20,32,16,17,14,15,15,38,15,31,3,10
-INS,BOVIN,BBA+03,P01317,1,3,6,0,4,3,4,2,1,1,6,0,3,1,3,1,3,1,5,0,4
-CTRA,BOVIN,BBA+03,P00766,1,22,10,9,5,6,23,2,10,14,19,2,13,9,10,3,27,22,23,8,4
-LACB,BOVIN,BBA+03,P02754,1,15,5,10,16,4,4,2,10,15,22,4,5,8,9,3,7,8,9,2,4
-MYG,HORSE,BBA+03,P68082,1,15,0,8,13,7,15,11,9,19,17,2,2,4,6,2,5,7,7,2,2
-A0FHA7,HORVU,BBA+03,A0FHA7,1,41,11,27,44,25,30,10,16,40,62,8,19,29,16,30,38,21,31,6,13
-CLPP,HORVU,BBA+03,P48883,1,15,3,15,17,11,14,5,20,7,16,12,3,13,3,12,9,12,15,5,9
-E13A,HORVU,BBA+03,P34742,1,41,2,15,8,14,30,2,13,9,24,5,24,20,7,16,16,21,26,3,14
-CSG,METMP,BBA+03,Q6M088,1,91,0,61,36,14,47,0,29,29,46,9,20,14,9,2,21,34,65,3,16
-HJA1,METJA,BBA+03,Q57632,1,15,0,1,11,1,1,1,4,10,7,1,0,2,0,4,1,1,6,0,1
-HJA2,METJA,BBA+03,Q58342,1,15,0,1,11,1,1,1,4,9,7,1,0,2,1,4,1,1,6,0,1
-HJA3,METJA,BBA+03,Q58655,1,14,1,2,7,1,3,1,3,9,6,1,0,2,1,5,2,1,7,0,1
-HJA4,METJA,BBA+03,Q60264,1,13,0,2,10,2,1,1,4,10,7,1,0,2,0,4,1,2,6,0,1
-HstA,METVO,BBA+03,Q6ZZY8,1,11,0,2,9,1,3,1,5,8,5,3,0,2,0,5,3,1,8,0,0
-HstB,METVO,BBA+03,Q6ZZY7,1,12,0,2,11,1,2,1,4,7,9,3,0,2,0,4,3,1,4,0,0
-HARA,PYRAB,BBA+03,P61881,1,12,0,2,9,1,3,1,5,8,5,1,0,2,1,5,2,1,7,0,2
-HARB,PYRAB,BBA+03,Q9V1F5,1,13,0,3,7,0,2,2,5,10,8,1,0,2,1,5,2,1,5,0,0
-HARA,PYRFU,BBA+03,P61882,1,12,0,2,9,1,3,1,5,8,5,1,0,2,1,5,2,1,7,0,2
-HARB,PYRFU,BBA+03,O59627,1,12,0,3,7,0,3,2,6,10,6,1,0,2,2,4,2,1,6,0,0
-HMmA,METMP,BBA+03,Q6M085,1,13,0,4,8,1,2,1,4,9,5,5,0,2,0,3,2,1,7,0,0
-Q6LXK3,METMP,BBA+03,Q6LXK3,1,15,0,4,7,0,2,1,2,7,7,4,0,2,0,4,3,1,7,0,0
-DN71,SULSO,BBA+03,P61991,1,3,0,3,6,2,7,0,3,14,3,3,0,1,3,2,3,3,5,1,2
-DN72,SULSO,BBA+03,P39476,1,3,0,3,7,2,7,0,3,14,3,2,0,1,2,2,3,3,5,1,2
-TPX,THIDA,BBA+03,Q3SMC0,1,23,2,11,7,7,11,1,8,13,15,4,9,9,1,3,8,10,19,0,2
-TPX,BACHD,BBA+03,Q9K813,1,21,2,12,12,6,9,2,6,11,16,2,9,6,3,6,9,11,18,1,4
-TPX,BACSU,BBA+03,P80864,1,17,2,11,14,7,12,2,9,12,12,2,7,6,4,6,9,10,18,1,5
-TPX,AQUAE,BBA+03,O66780,1,11,2,10,16,6,12,0,11,14,11,5,7,8,5,6,4,10,27,0,4
-TPX,ECOLI,BBA+03,P0A862,1,22,3,10,7,10,10,1,10,7,15,0,10,6,9,5,10,12,18,0,2
-H-NS,PHOPR,BBA+03,Q6LT83,1,14,0,9,19,2,5,1,2,14,19,3,2,4,4,9,8,7,5,1,3
+O08452,PYRFU,UniProt,O08452,1,28,5,33,23,20,45,12,25,19,27,4,21,20,7,14,21,16,31,26,37
+AMY,BACSU,UniProt,P00691,1,49,1,44,23,20,51,16,35,30,36,10,54,23,29,24,55,45,32,14,28
+AMYA,PYRFU,UniProt,P49067,1,26,2,35,66,37,44,14,41,48,59,12,24,28,15,35,33,12,59,17,41
+BPT1,BOVIN,UniProt,P00974,1,6,6,2,2,4,6,0,2,4,2,1,3,4,1,6,1,3,1,0,4
+CYC,BOVIN,UniProt,P62894,1,6,2,3,9,4,14,3,6,18,6,2,5,4,3,2,1,8,3,1,4
+LYSC,CHICK,UniProt,P00698,1,12,8,7,2,3,12,1,6,6,8,2,14,2,3,11,10,7,6,6,3
+MYG,PHYCA,UniProt,P02185,1,17,0,7,14,6,11,12,9,19,18,2,1,4,5,4,6,5,8,2,3
+NUC,STAAU,UniProt,P00644,1,14,0,8,12,3,10,4,5,23,11,4,6,6,6,5,5,10,9,1,7
+RNAS1,BOVIN,UniProt,P61823,1,12,8,5,5,3,3,4,3,10,2,4,10,4,7,4,15,10,9,0,6
+RNBR,BACAM,UniProt,P00648,1,8,0,9,3,4,10,2,8,8,7,0,6,3,4,6,9,9,4,3,7
+RNH,ECOLI,UniProt,P0A7Y4,1,14,3,7,12,2,14,5,7,11,12,4,7,5,8,10,4,10,9,6,5
+RNH,THET8,UniProt,P29253,1,19,4,5,15,6,14,8,1,12,17,3,6,12,3,15,4,9,6,5,2
+RNT1,ASPOR,UniProt,P00651,1,7,4,6,6,4,12,3,2,1,3,0,9,4,3,1,15,6,8,1,9
+CSG,HALJP,UniProt,Q9C4B4,1,61,0,122,86,20,78,4,47,4,47,0,51,29,21,19,74,79,66,2,18
+CSG,HALSA,UniProt,Q9HM69,1,54,0,113,70,18,77,2,41,15,44,7,56,21,27,19,76,85,68,2,23
+CSG,HALVO,UniProt,P25062,1,59,0,89,67,13,83,2,48,4,49,5,43,19,21,14,85,108,65,3,16
+CSG,METFE,UniProt,P27373,1,24,8,23,31,15,56,1,77,41,23,6,71,19,6,16,35,46,31,8,34
+CSG,METJA,UniProt,Q58232,1,46,2,78,36,10,36,3,25,54,46,12,31,13,3,4,21,28,55,4,23
+CSG,METSC,UniProt,P27374,1,24,8,23,31,15,56,1,74,41,23,8,71,19,6,16,35,46,32,8,34
+CSG,METVO,UniProt,Q50833,1,75,0,64,41,13,41,0,26,46,49,11,26,9,8,3,30,37,52,3,19
+CSG,METTL,UniProt,Q8X235,1,60,0,65,35,10,38,0,34,48,42,7,27,9,9,7,32,29,59,3,16
+CSG,METBU,UniProt,Q12YZ7,1,5,1,20,20,11,26,5,29,14,18,3,32,10,8,4,23,8,28,1,12
+SLAP1,BACAN,UniProt,P49051,1,95,0,42,70,22,51,2,23,106,51,7,38,21,24,3,36,74,100,5,15
+SLAP,ACEKI,UniProt,P22258,1,65,0,59,25,20,51,3,35,57,58,4,62,16,19,14,36,71,92,4,45
+SLAP,AERSA,UniProt,P35823,1,57,0,30,19,25,43,4,24,25,45,2,39,12,19,14,26,47,41,4,5
+SLAP,BACCI,UniProt,P35824,1,159,9,98,76,51,167,17,61,73,114,11,66,88,46,108,117,125,132,19,49
+SLAP,GEOSE,UniProt,P35825,1,135,0,83,63,40,71,5,53,109,80,3,74,28,31,21,69,156,131,4,42
+SLAP,CAMFE,UniProt,P35827,1,127,0,84,26,28,84,4,68,68,67,12,73,4,4,2,82,119,71,2,14
+SLAP,CAUCR,UniProt,P35828,1,203,0,53,9,31,124,3,40,11,76,3,60,8,20,8,75,190,94,2,15
+SLAP,LACAC,UniProt,P35829,1,56,0,20,8,9,23,3,15,36,13,1,51,8,8,7,33,54,52,0,23
+SLAP,LACBR,UniProt,Q05044,1,60,0,24,6,8,41,2,6,36,20,4,21,6,9,8,37,81,33,4,29
+SLAP,LACHE,UniProt,P38059,1,45,0,24,12,11,24,3,21,41,12,3,38,13,10,5,30,52,42,0,23
+SLAP2,BACAN,UniProt,P94217,1,70,0,62,45,26,76,8,40,86,62,1,57,23,21,9,51,71,99,4,22
+SLAP,BACLI,UniProt,P49052,1,80,0,63,54,29,79,9,45,89,50,2,51,23,17,15,41,78,95,4,20
+POLG.VP4,POL1M,UniProt,P03300,1,7,0,4,2,2,4,1,4,5,2,1,6,3,4,2,9,5,3,0,4
+POLG.VP2,POL1M,UniProt,P03300,1,21,9,10,12,8,18,5,11,5,25,8,20,18,10,13,22,24,14,8,10
+POLG.VP3,POL1M,UniProt,P03300,1,15,5,14,10,10,13,5,14,10,23,12,8,18,7,9,21,20,13,3,8
+POLG.VP1,POL1M,UniProt,P03300,1,23,2,17,11,12,17,7,12,15,20,5,14,21,9,15,24,32,26,4,16
+POLG.2A,POL1M,UniProt,P03300,1,12,6,7,9,5,16,6,8,3,8,4,8,4,7,8,8,6,10,1,13
+POLG.P2B,POL1M,UniProt,P03300,1,6,2,4,5,2,5,0,12,7,12,1,4,2,4,2,7,12,5,2,3
+POLG.P2C,POL1M,UniProt,P03300,1,22,10,15,20,14,12,8,25,23,25,13,20,15,19,19,27,15,16,4,7
+POLG.P3A,POL1M,UniProt,P03300,1,7,2,5,4,2,4,1,7,6,6,2,4,4,7,3,3,6,9,1,4
+POLG.VPg,POL1M,UniProt,P03300,1,2,0,0,0,0,2,0,1,3,1,0,2,3,1,1,0,3,2,0,1
+POLG.3C,POL1M,UniProt,P03300,1,15,3,8,9,8,18,4,13,9,11,5,9,8,7,9,9,19,13,0,5
+POLG.RNA,POL1M,UniProt,P03300,1,31,5,32,30,19,28,12,26,38,46,17,18,22,7,18,30,26,24,7,25
+FLAB1,AERPE,UniProt,Q9YAN8,1,20,2,8,14,7,18,0,13,8,20,4,6,8,3,5,18,13,25,1,4
+FLAB2,AERPE,UniProt,Q9YAN6,1,27,2,18,15,6,20,0,17,6,26,3,6,14,2,7,16,22,23,0,10
+FLAB1,METJA,UniProt,Q58301,1,27,1,11,6,8,18,2,19,8,17,4,10,6,9,1,16,17,18,1,6
+FLAB2,METJA,UniProt,Q58302,1,28,1,7,8,5,18,1,21,8,19,3,12,6,9,2,13,21,17,1,5
+FLAB3,METJA,UniProt,Q58303,1,21,0,8,11,8,19,3,26,6,11,3,15,7,6,6,12,17,20,1,5
+FLA,BACSU,UniProt,P02968,1,39,0,22,17,5,19,4,22,15,29,8,27,2,24,14,24,18,14,0,1
+FLAA,AQUPY,UniProt,P46210,1,54,0,37,19,10,37,2,48,23,45,8,34,9,25,20,34,48,28,2,18
+FLAA,AQUAE,UniProt,O67803,1,57,0,33,18,16,39,1,38,16,46,7,46,7,30,18,38,54,37,0,17
+FLJJ,CAUCR,UniProt,P02969,1,40,0,23,7,5,24,2,13,10,35,5,19,7,18,12,17,22,16,1,0
+PST1,YEAST,UniProt,YDR055W,1,28,4,17,8,18,28,2,26,33,39,0,36,3,12,1,83,35,23,1,3
+TSA1,YEAST,UniProt,YML028W,1,19,2,11,15,11,13,2,13,14,17,0,8,11,6,6,8,13,18,3,5
+PRX1,YEAST,UniProt,YBL064C,1,17,3,20,11,18,11,3,20,25,17,2,12,15,11,11,17,18,21,4,5
+DOT5,YEAST,UniProt,YIL010W,1,14,2,10,19,10,10,3,12,25,18,2,11,12,7,12,20,8,16,0,4
+MOD5.M,YEAST,UniProt,P07884-1,1,15,7,29,30,12,20,11,31,46,35,10,22,16,21,25,20,29,22,9,18
+MOD5.N,YEAST,UniProt,P07884-2,1,15,6,29,30,12,18,11,31,44,32,9,21,15,21,25,20,29,22,9,18
+COX1,YEAST,UniProt,P00401,1,44,1,13,9,44,43,16,49,10,68,21,27,25,9,9,43,31,38,10,24
+COX2,YEAST,UniProt,P00410,1,15,4,13,16,11,12,5,25,8,24,6,7,13,8,4,13,14,19,5,14
+COX3,YEAST,UniProt,P00420,1,22,2,5,7,16,19,15,18,2,36,13,9,9,4,7,16,20,25,9,15
+COX4,YEAST,UniProt,P04037,1,6,3,10,9,1,13,4,6,9,11,2,5,10,4,4,6,10,11,2,4
+COX5A,YEAST,UniProt,P00424,1,13,0,5,8,3,10,1,3,11,11,4,6,6,11,5,13,4,9,6,4
+COX5B,YEAST,UniProt,P00425,1,8,0,4,11,4,11,1,5,13,15,2,9,8,6,6,7,8,6,6,4
+COX6,YEAST,UniProt,P00427,1,11,1,9,16,7,1,1,2,7,11,0,4,5,3,7,5,3,9,0,6
+COX7,YEAST,UniProt,P10174,1,8,0,0,0,3,1,1,6,6,6,0,2,5,3,3,3,2,4,2,4
+COX8,YEAST,UniProt,P04039,1,4,1,1,1,7,4,2,2,6,2,0,1,3,1,1,1,1,6,0,3
+COX9,YEAST,UniProt,P07255,1,4,0,2,3,3,5,1,6,6,3,3,1,1,0,4,2,3,3,3,2
+KC11,YEAST,UniProt,P23291,1,31,4,28,25,17,35,17,23,37,48,12,33,30,72,26,30,24,18,4,24
+KC12,YEAST,UniProt,P23292,1,34,3,29,25,16,40,19,21,38,44,12,39,28,61,26,37,23,20,4,27
+KC13,YEAST,UniProt,P39962,1,24,13,34,21,19,28,18,35,37,35,11,47,28,28,31,46,20,16,4,29
+HRR25,YEAST,UniProt,P29295,1,21,5,24,27,22,28,14,26,33,47,13,31,29,43,32,35,20,17,4,23
+GAL83,YEAST,UniProt,Q04739,1,24,1,37,21,12,23,15,18,18,29,15,32,31,33,11,33,26,20,4,14
+SIP1,YEAST,UniProt,P32578,1,49,6,60,47,27,33,35,43,48,70,19,61,45,32,42,118,55,43,4,26
+SIP2,YEAST,UniProt,P34164,1,17,4,32,27,10,21,8,21,27,26,9,18,32,24,22,44,34,23,3,12
+GLRX1,YEAST,UniProt,P25373,1,8,2,5,12,2,6,3,9,8,14,2,8,4,5,3,3,5,7,0,4
+GLRX2.C,YEAST,UniProt,P17695,1,7,2,4,10,3,7,2,6,12,12,1,6,4,6,0,7,6,10,0,3
+GLRX2,YEAST,UniProt,P17695,1,9,2,5,11,7,7,2,13,14,15,3,8,5,6,2,10,10,11,0,3
+GLRX3,YEAST,UniProt,Q03835,1,17,5,16,32,19,12,7,17,15,23,5,16,12,15,8,27,13,14,2,10
+GLRX4,YEAST,UniProt,P32642,1,18,2,16,26,16,10,3,17,16,19,4,9,11,15,8,22,10,16,2,4
+GLRX5,YEAST,UniProt,Q02784,1,12,2,6,18,9,9,0,10,9,15,4,5,11,4,9,8,7,7,1,4
+GSHR.M,YEAST,UniProt,P41921,1,33,5,24,35,17,43,15,32,42,34,9,28,14,11,18,29,26,45,4,19
+GSHR.C,YEAST,UniProt,P41921,1,32,5,24,35,16,43,15,31,41,32,8,28,14,9,16,27,23,45,4,19
+GPD1,YEAST,UniProt,Q00055,1,32,10,17,33,15,34,12,27,22,32,5,19,14,13,13,24,17,35,6,10
+GPD2,YEAST,UniProt,P41911,1,32,7,21,30,16,29,21,31,26,44,8,19,17,18,21,23,25,34,5,13
+TRX1,YEAST,UniProt,P22217,1,16,2,7,6,6,4,0,5,10,6,3,4,5,6,0,4,4,10,1,3
+TRX2,YEAST,UniProt,P22803,1,15,2,7,6,5,5,0,5,9,5,3,2,4,4,1,9,4,12,1,4
+TRX3,YEAST,UniProt,P25372,1,7,4,8,5,6,6,1,10,13,12,6,4,8,5,5,5,9,8,1,4
+TRXB1,YEAST,UniProt,P29509,1,36,4,15,24,11,29,5,22,24,24,8,10,13,8,10,19,28,17,2,9
+TRXB2,YEAST,UniProt,P38816,1,35,4,14,24,14,28,7,26,20,23,10,14,14,9,16,26,24,23,2,9
+AMPM1,YEAST,UniProt,YLR244C,1,20,14,20,25,9,26,14,22,33,24,7,20,25,11,15,21,27,22,4,18
+AMPM2,YEAST,UniProt,YBL091C,1,29,4,32,35,12,31,14,22,37,31,10,22,17,14,21,19,24,27,2,18
+EXG1,YEAST,UniProt,YLR300W,1,25,7,37,25,17,31,10,24,14,34,5,27,13,18,15,27,18,19,15,27
+CLPX,ECOLI,UniProt,P0A6H1,1,35,7,29,36,10,35,7,31,33,45,4,11,17,20,19,23,19,31,0,11
+CLPP,ECOLI,UniProt,P0A6G7,1,16,2,10,16,8,16,6,16,7,19,12,7,8,10,13,13,10,11,0,7
+CLPA,ECOLI,UniProt,P0ABH9,1,69,3,44,64,27,50,21,46,44,78,15,32,25,36,50,42,38,60,3,11
+HSLU,ECOLI,UniProt,P0A6H5,1,42,2,27,46,10,24,7,38,30,40,14,15,17,23,29,22,21,28,3,5
+HSLV,ECOLI,UniProt,P0A7B8,1,24,1,10,13,5,15,5,12,10,18,3,8,2,4,10,5,12,13,1,4
+FTSH,ECOLI,UniProt,P0AAI3,1,59,2,37,50,25,58,9,40,37,51,25,26,36,22,43,32,27,50,5,10
+LON,ECOLI,UniProt,P0A9M0,1,62,6,51,68,10,51,14,51,61,84,30,26,37,28,49,38,32,63,3,20
+AMY1,HORVU,UniProt,P25718,1,47,4,37,13,15,44,13,23,22,25,12,17,17,12,15,21,17,28,16,16
+AMYB,HORVU,UniProt,P16098,1,41,5,31,31,23,56,14,22,22,41,18,26,35,28,27,22,21,37,10,25
+GUB2,HORVU,UniProt,P12257,1,43,2,6,6,15,33,7,11,9,17,11,24,18,10,8,22,15,30,4,15
+ALEU,HORVU,UniProt,P05167,1,18,1,4,8,7,7,2,3,2,10,2,4,3,2,17,15,7,5,1,3
+RPOE,ECOLI,UniProt,P0AGB6,1,17,1,12,16,7,8,1,12,7,18,4,7,8,9,18,14,6,18,1,7
+FLIA,ECOLI,UniProt,P0AEM6,1,18,0,14,25,2,13,5,9,6,36,5,9,5,17,24,12,11,17,3,8
+RP32,ECOLI,UniProt,P0AGB3,1,33,0,23,22,8,12,6,12,16,29,11,13,6,14,23,16,9,18,6,7
+RPOS,ECOLI,UniProt,P13445,1,24,0,23,41,9,19,4,19,12,44,5,13,8,15,34,13,17,20,3,7
+RP54,ECOLI,UniProt,P24255,1,31,3,36,42,10,18,9,30,19,59,10,14,21,38,26,36,33,26,5,11
+RPOD,ECOLI,UniProt,P00579,1,49,3,54,71,15,24,9,43,34,54,25,19,19,30,46,29,38,34,4,13
+AMY1,ECOLI,UniProt,P25718,1,58,4,55,25,29,58,19,22,31,56,15,24,31,42,27,39,45,29,25,25
+AMPM,ECOLI,UniProt,P0AE18,1,14,7,17,22,6,22,9,26,18,16,9,8,11,5,13,12,16,24,1,8
+AMPM,PYRFU,UniProt,P56218,1,30,0,12,29,8,22,6,29,26,26,9,9,14,5,14,6,13,24,1,12
+ALBU,BOVIN,UniProt,P02769,1,47,35,40,59,27,16,17,14,59,61,4,14,28,20,23,28,33,36,2,20
+OVAL,CHICK,UniProt,P01012,1,35,6,14,33,20,19,7,25,20,32,16,17,14,15,15,38,15,31,3,10
+INS,BOVIN,UniProt,P01317,1,3,6,0,4,3,4,2,1,1,6,0,3,1,3,1,3,1,5,0,4
+CTRA,BOVIN,UniProt,P00766,1,22,10,9,5,6,23,2,10,14,19,2,13,9,10,3,27,22,23,8,4
+LACB,BOVIN,UniProt,P02754,1,15,5,10,16,4,4,2,10,15,22,4,5,8,9,3,7,8,9,2,4
+MYG,HORSE,UniProt,P68082,1,15,0,8,13,7,15,11,9,19,17,2,2,4,6,2,5,7,7,2,2
+A0FHA7,HORVU,UniProt,A0FHA7,1,41,11,27,44,25,30,10,16,40,62,8,19,29,16,30,38,21,31,6,13
+CLPP,HORVU,UniProt,P48883,1,15,3,15,17,11,14,5,20,7,16,12,3,13,3,12,9,12,15,5,9
+E13A,HORVU,UniProt,P34742,1,41,2,15,8,14,30,2,13,9,24,5,24,20,7,16,16,21,26,3,14
+CSG,METMP,UniProt,Q6M088,1,91,0,61,36,14,47,0,29,29,46,9,20,14,9,2,21,34,65,3,16
+HJA1,METJA,UniProt,Q57632,1,15,0,1,11,1,1,1,4,10,7,1,0,2,0,4,1,1,6,0,1
+HJA2,METJA,UniProt,Q58342,1,15,0,1,11,1,1,1,4,9,7,1,0,2,1,4,1,1,6,0,1
+HJA3,METJA,UniProt,Q58655,1,14,1,2,7,1,3,1,3,9,6,1,0,2,1,5,2,1,7,0,1
+HJA4,METJA,UniProt,Q60264,1,13,0,2,10,2,1,1,4,10,7,1,0,2,0,4,1,2,6,0,1
+HstA,METVO,UniProt,Q6ZZY8,1,11,0,2,9,1,3,1,5,8,5,3,0,2,0,5,3,1,8,0,0
+HstB,METVO,UniProt,Q6ZZY7,1,12,0,2,11,1,2,1,4,7,9,3,0,2,0,4,3,1,4,0,0
+HARA,PYRAB,UniProt,P61881,1,12,0,2,9,1,3,1,5,8,5,1,0,2,1,5,2,1,7,0,2
+HARB,PYRAB,UniProt,Q9V1F5,1,13,0,3,7,0,2,2,5,10,8,1,0,2,1,5,2,1,5,0,0
+HARA,PYRFU,UniProt,P61882,1,12,0,2,9,1,3,1,5,8,5,1,0,2,1,5,2,1,7,0,2
+HARB,PYRFU,UniProt,O59627,1,12,0,3,7,0,3,2,6,10,6,1,0,2,2,4,2,1,6,0,0
+HMmA,METMP,UniProt,Q6M085,1,13,0,4,8,1,2,1,4,9,5,5,0,2,0,3,2,1,7,0,0
+Q6LXK3,METMP,UniProt,Q6LXK3,1,15,0,4,7,0,2,1,2,7,7,4,0,2,0,4,3,1,7,0,0
+DN71,SULSO,UniProt,P61991,1,3,0,3,6,2,7,0,3,14,3,3,0,1,3,2,3,3,5,1,2
+DN72,SULSO,UniProt,P39476,1,3,0,3,7,2,7,0,3,14,3,2,0,1,2,2,3,3,5,1,2
+TPX,THIDA,UniProt,Q3SMC0,1,23,2,11,7,7,11,1,8,13,15,4,9,9,1,3,8,10,19,0,2
+TPX,BACHD,UniProt,Q9K813,1,21,2,12,12,6,9,2,6,11,16,2,9,6,3,6,9,11,18,1,4
+TPX,BACSU,UniProt,P80864,1,17,2,11,14,7,12,2,9,12,12,2,7,6,4,6,9,10,18,1,5
+TPX,AQUAE,UniProt,O66780,1,11,2,10,16,6,12,0,11,14,11,5,7,8,5,6,4,10,27,0,4
+TPX,ECOLI,UniProt,P0A862,1,22,3,10,7,10,10,1,10,7,15,0,10,6,9,5,10,12,18,0,2
+H-NS,PHOPR,UniProt,Q6LT83,1,14,0,9,19,2,5,1,2,14,19,3,2,4,4,9,8,7,5,1,3
cell,ECOLI,Nei86,NA,1,488,87,229,250,176,582,90,276,326,428,146,229,210,250,281,205,241,402,54,131
-PPB,ECOLI,BBA+03,P00634,1,64,4,28,24,8,45,10,16,28,39,8,20,21,22,14,22,40,23,3,11
-SPTA2.SH3,CHICK,BBA+03,P07751,1,3,0,5,4,1,3,0,1,8,7,1,3,3,2,2,2,4,6,2,3
-BARS,BACAM,BBA+03,P11540,1,6,2,4,11,2,5,1,6,6,12,0,3,2,6,3,5,4,5,3,3
-TRY1,BOVIN,BBA+03,P00760,1,14,12,6,4,3,25,3,15,14,14,2,16,8,10,2,34,10,17,4,10
-CYB5.HEME,BOVIN,BBA+03,P00171,1,3,0,4,11,3,6,5,4,6,8,0,3,1,2,2,4,6,4,1,4
-LYS,BPT4,BBA+03,P00720,1,15,2,10,8,5,11,1,10,13,16,5,12,3,5,13,6,11,9,3,6
-RNT1.K25,ASPOR,BBA+03,P00651,1,7,4,6,6,4,12,3,2,2,3,0,9,4,2,1,15,6,8,1,9
-IOVO.3,MELGA,BBA+03,P68390,1,2,6,2,3,2,4,1,0,4,4,0,5,3,0,1,4,4,3,0,3
-PAP1,CARPA,BBA+03,P00784,1,14,7,6,10,4,28,2,12,10,11,0,13,10,10,12,13,8,18,5,19
-PRVB,ESOLU,BBA+03,P02619,1,20,1,14,6,10,7,1,4,12,9,2,1,1,2,1,8,2,5,0,1
-PEPA,PIG,BBA+03,P00791,1,16,6,29,13,14,35,1,25,1,26,4,13,15,13,2,44,26,22,5,16
-PLMN.K4,HUMAN,BBA+03,P00747,1,2,6,4,2,1,6,3,0,6,2,2,5,6,3,4,7,10,1,3,5
-SPG1.B1,STRSG,BBA+03,P06654,1,6,0,5,5,2,4,0,1,6,3,0,3,0,1,0,0,11,4,1,3
-SPG1.B2,STRSG,BBA+03,P06654,1,6,0,5,4,2,4,0,1,7,2,0,3,0,1,0,0,11,5,1,3
-DN71.d,SULAC,BBA+03,P13123,1,4,0,5,7,2,5,0,1,13,3,2,1,1,0,4,3,3,7,1,2
-SSI,STRAO|2,BBA+03,P01006,2,36,8,12,10,6,22,4,0,4,18,6,6,16,2,8,18,16,26,2,6
-SSI,STRAO,BBA+03,P01006,1,18,4,6,5,3,11,2,0,2,9,3,3,8,1,4,9,8,13,1,3
-TRPA,SALTY,BBA+03,P00929,1,40,3,13,16,12,20,5,18,8,28,5,11,17,10,15,16,7,17,0,7
-UBIQ,HUMAN,BBA+03,P62988,1,2,0,5,6,2,6,1,7,7,9,1,2,3,6,4,3,7,4,0,1
-CDC2,HUMAN,BBA+03,NA,1,12,1,19,18,11,18,8,22,24,36,8,10,15,10,15,21,13,18,4,14
-CDK2,HUMAN,BBA+03,NA,1,19,3,16,17,16,16,10,16,21,39,5,8,19,9,16,14,17,23,4,10
-CDK3,HUMAN,BBA+03,NA,1,16,2,14,21,15,18,9,17,20,41,7,6,19,13,19,17,16,19,4,12
-CDK4,HUMAN,BBA+03,NA,1,22,4,17,19,13,24,9,11,11,33,8,7,25,8,23,15,15,27,3,9
-CDK5,HUMAN,BBA+03,NA,1,16,8,21,17,15,16,7,11,23,40,4,13,19,9,16,14,12,18,3,10
-CDK6,HUMAN,BBA+03,NA,1,19,6,23,22,16,18,9,12,18,39,6,7,17,14,22,20,19,28,3,8
-CDK7,HUMAN,BBA+03,NA,1,24,5,20,18,17,23,10,20,24,50,8,14,21,13,18,15,18,15,4,9
-CDK8,HUMAN,BBA+03,NA,1,25,6,33,24,17,27,22,23,39,40,13,16,33,24,24,28,23,21,6,20
-CDK9,HUMAN,BBA+03,NA,1,22,7,21,23,14,19,8,19,29,45,11,18,18,17,23,19,18,22,5,14
-CDK10,HUMAN,BBA+03,NA,1,18,10,13,27,13,21,11,19,26,48,9,10,26,12,24,17,20,22,4,10
-CCNA1,HUMAN,BBA+03,NA,1,34,11,24,37,18,28,8,18,21,59,12,10,29,22,22,27,26,31,4,24
-CCNA2,HUMAN,BBA+03,NA,1,38,3,20,33,11,16,12,15,31,52,12,16,34,25,16,25,23,30,3,17
-CCNB1,HUMAN,BBA+03,NA,1,39,5,19,33,10,17,8,19,36,45,22,17,35,19,16,20,23,35,2,13
-CCNB2,HUMAN,BBA+03,NA,1,25,5,19,26,9,13,8,21,35,46,13,20,18,23,18,26,22,34,3,14
-CCNB3,HUMAN,BBA+03,NA,1,75,21,41,164,56,27,29,69,172,162,40,37,80,60,23,139,113,58,4,25
-CCNC,HUMAN,BBA+03,NA,1,18,7,12,20,15,7,5,15,19,35,10,9,15,18,13,17,10,17,6,15
-CCND1,HUMAN,BBA+03,NA,1,26,13,13,34,10,3,4,12,18,36,12,12,15,13,16,16,13,21,2,6
-CCND2,HUMAN,BBA+03,NA,1,21,12,20,24,8,7,5,13,17,41,8,7,13,19,16,14,16,18,3,7
-CCND3,HUMAN,BBA+03,NA,1,30,12,12,21,6,14,7,10,10,41,9,1,17,16,22,20,18,15,3,8
-CCNE1,HUMAN,BBA+03,NA,1,31,10,29,29,13,14,9,20,26,46,16,12,25,21,24,27,15,22,8,13
-CCNE2,HUMAN,BBA+03,NA,1,18,10,18,30,18,12,10,31,33,44,10,14,23,23,17,29,23,22,8,11
-CCNF,HUMAN,BBA+03,NA,1,59,32,41,57,24,40,22,25,34,97,7,15,40,41,50,74,42,55,12,19
-CCNG1,HUMAN,BBA+03,NA,1,15,11,9,22,13,8,7,17,23,43,6,10,9,17,18,22,17,18,3,7
-CCNG2,HUMAN,BBA+03,NA,1,19,19,14,36,16,11,10,18,24,50,4,14,14,8,13,31,16,18,2,7
-CCNH,HUMAN,BBA+03,NA,1,20,8,14,31,14,7,8,14,24,42,10,15,15,10,20,24,13,17,2,15
-CCNI,HUMAN,BBA+03,NA,1,25,11,17,21,16,11,14,14,23,52,11,12,24,18,18,36,16,26,4,8
-CCNJ,HUMAN,BBA+03,NA,1,26,12,12,20,12,12,16,15,13,52,9,10,19,32,17,31,22,19,6,17
-CCNJL,HUMAN,BBA+03,NA,1,34,17,17,17,16,14,21,10,16,60,9,8,37,20,18,43,32,25,5,16
-CCNK,HUMAN,BBA+03,NA,1,20,7,18,21,15,12,11,13,28,30,7,7,32,42,14,22,17,22,8,11
-CCNL1,HUMAN,BBA+03,NA,1,36,7,16,32,13,27,30,25,37,41,6,18,27,17,62,64,33,22,2,11
-CCNL2,HUMAN,BBA+03,NA,1,43,9,21,31,12,35,16,19,41,44,7,11,32,21,58,59,17,27,2,15
-CCNO,HUMAN,BBA+03,NA,1,37,17,14,17,14,17,11,8,11,49,4,6,30,19,25,32,16,18,1,4
-CCNT1,HUMAN,BBA+03,NA,1,48,7,29,44,20,31,39,24,52,62,16,32,52,38,30,90,53,36,8,15
-CCNT2,HUMAN,BBA+03,NA,1,37,9,32,37,15,33,46,34,56,59,17,26,41,41,26,113,46,37,7,18
-CCNY,HUMAN,BBA+03,NA,1,23,9,26,20,11,5,9,22,19,38,4,19,18,11,26,33,15,15,4,14
-CD5R1,HUMAN,BBA+03,NA,1,20,8,12,11,9,14,7,10,23,38,5,16,19,15,14,37,14,21,4,10
-MAT1,HUMAN,BBA+03,NA,1,13,8,15,35,11,13,7,11,27,39,6,15,16,21,17,14,13,18,1,9
-Q2RJF3,MOOTA,BBA+03,NA,1,34,5,28,37,16,32,13,32,30,50,10,20,18,10,23,19,15,27,3,26
-Q2RMD6,MOOTA,BBA+03,NA,1,146,18,60,72,48,93,25,68,80,91,27,40,56,43,42,64,62,80,11,45
-Q2RJ73,MOOTA,BBA+03,NA,1,54,10,46,59,35,64,11,63,42,52,26,21,43,17,39,23,40,47,9,28
+PPB,ECOLI,UniProt,P00634,1,64,4,28,24,8,45,10,16,28,39,8,20,21,22,14,22,40,23,3,11
+SPTA2.SH3,CHICK,UniProt,P07751,1,3,0,5,4,1,3,0,1,8,7,1,3,3,2,2,2,4,6,2,3
+BARS,BACAM,UniProt,P11540,1,6,2,4,11,2,5,1,6,6,12,0,3,2,6,3,5,4,5,3,3
+TRY1,BOVIN,UniProt,P00760,1,14,12,6,4,3,25,3,15,14,14,2,16,8,10,2,34,10,17,4,10
+CYB5.HEME,BOVIN,UniProt,P00171,1,3,0,4,11,3,6,5,4,6,8,0,3,1,2,2,4,6,4,1,4
+LYS,BPT4,UniProt,P00720,1,15,2,10,8,5,11,1,10,13,16,5,12,3,5,13,6,11,9,3,6
+RNT1.K25,ASPOR,UniProt,P00651,1,7,4,6,6,4,12,3,2,2,3,0,9,4,2,1,15,6,8,1,9
+IOVO.3,MELGA,UniProt,P68390,1,2,6,2,3,2,4,1,0,4,4,0,5,3,0,1,4,4,3,0,3
+PAP1,CARPA,UniProt,P00784,1,14,7,6,10,4,28,2,12,10,11,0,13,10,10,12,13,8,18,5,19
+PRVB,ESOLU,UniProt,P02619,1,20,1,14,6,10,7,1,4,12,9,2,1,1,2,1,8,2,5,0,1
+PEPA,PIG,UniProt,P00791,1,16,6,29,13,14,35,1,25,1,26,4,13,15,13,2,44,26,22,5,16
+PLMN.K4,HUMAN,UniProt,P00747,1,2,6,4,2,1,6,3,0,6,2,2,5,6,3,4,7,10,1,3,5
+SPG1.B1,STRSG,UniProt,P06654,1,6,0,5,5,2,4,0,1,6,3,0,3,0,1,0,0,11,4,1,3
+SPG1.B2,STRSG,UniProt,P06654,1,6,0,5,4,2,4,0,1,7,2,0,3,0,1,0,0,11,5,1,3
+DN71.d,SULAC,UniProt,P13123,1,4,0,5,7,2,5,0,1,13,3,2,1,1,0,4,3,3,7,1,2
+SSI,STRAO|2,UniProt,P01006,2,36,8,12,10,6,22,4,0,4,18,6,6,16,2,8,18,16,26,2,6
+SSI,STRAO,UniProt,P01006,1,18,4,6,5,3,11,2,0,2,9,3,3,8,1,4,9,8,13,1,3
+TRPA,SALTY,UniProt,P00929,1,40,3,13,16,12,20,5,18,8,28,5,11,17,10,15,16,7,17,0,7
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/chnosz -r 173
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