[CHNOSZ-commits] r140 - in pkg/CHNOSZ: . inst inst/extdata/cpetc inst/extdata/fasta

Fri Feb 10 16:39:23 CET 2017

Author: jedick
Date: 2017-02-10 16:39:22 +0100 (Fri, 10 Feb 2017)
New Revision: 140

Added:
   pkg/CHNOSZ/inst/extdata/cpetc/rubisco.csv
   pkg/CHNOSZ/inst/extdata/fasta/rubisco.fasta
Modified:
   pkg/CHNOSZ/DESCRIPTION
   pkg/CHNOSZ/inst/NEWS
Log:
svn: add new files


Modified: pkg/CHNOSZ/DESCRIPTION
===================================================================

--- pkg/CHNOSZ/DESCRIPTION	2017-02-10 14:51:45 UTC (rev 139)
+++ pkg/CHNOSZ/DESCRIPTION	2017-02-10 15:39:22 UTC (rev 140)
@@ -1,6 +1,6 @@
 Date: 2017-02-10
 Package: CHNOSZ
-Version: 1.0.8-29
+Version: 1.0.8-30
 Title: Chemical Thermodynamics and Activity Diagrams
 Author: Jeffrey Dick
 Maintainer: Jeffrey Dick <j3ffdick at gmail.com>

Modified: pkg/CHNOSZ/inst/NEWS
===================================================================
--- pkg/CHNOSZ/inst/NEWS	2017-02-10 14:51:45 UTC (rev 139)
+++ pkg/CHNOSZ/inst/NEWS	2017-02-10 15:39:22 UTC (rev 140)
@@ -1,4 +1,4 @@
-CHANGES IN CHNOSZ 1.0.8-29 (2017-02-10)
+CHANGES IN CHNOSZ 1.0.8-30 (2017-02-10)
 ---------------------------------------
 
 DOCUMENTATION:

Added: pkg/CHNOSZ/inst/extdata/cpetc/rubisco.csv
===================================================================
--- pkg/CHNOSZ/inst/extdata/cpetc/rubisco.csv	                        (rev 0)
+++ pkg/CHNOSZ/inst/extdata/cpetc/rubisco.csv	2017-02-10 15:39:22 UTC (rev 140)
@@ -0,0 +1,28 @@
+ID,T1,T2,domain,species
+G9FID8,0,6,E,"Phaeocystis antarctica"
+M9R7V1,4,10,B,"Octadecabacter antarcticus 307"
+K4MAK9,18,18,A,"Methanolobus psychrophilus"
+Q12TQ0,23,23,A,"Methanococcoides burtonii"
+Q9ZI34,25,30,B,"Bradyrhizobium japonicum"
+P0C916,28,30,B,"Thiobacillus ferrooxidans"
+P00874,30,30,E,"Zea mays"
+Q0EX22,30,30,B,"Mariprofundus ferrooxydans"
+L0RHZ1,35,35,B,"Desulfovibrio hydrothermalis"
+Q8THG2,35,40,A,"Methanosarcina acetivorans"
+F9ZLP0,45,45,B,"Acidithiobacillus caldus"
+P37393,45,45,E,"Cyanidium caldarium"
+P72383,45,50,B,"Sulfobacillus acidophilus"
+Q51856,52,52,B,"Pseudomonas hydrogenothermophila"
+Q2JIP3,50,55,B,"Synechococcus sp. (strain JA-2-3B'a(2-13))"
+A0B9K9,55,60,A,"Methanosaeta thermophila"
+Q8DIS5,57,57,B,"Thermosynechococcus elongatus"
+G8LZL2,60,60,B,"Clostridium clariflavum"
+F8IID7,65,65,B,"Bacillus acidocaldarius"
+A8F7V4,65,65,B,"Thermotoga lettingae"
+B9KXE5,70,70,B,"Thermomicrobium roseum"
+O28635,76,76,A,"Archaeoglobus fulgidus"
+Q58632,85,85,A,"Methanocaldococcus jannaschii"
+A1RZJ5,85,90,A,"Thermofilum pendens"
+A3DND9,85,92,A,"Staphylothermus marinus"
+O58677,98,98,A,"Pyrococcus horikoshii"
+Q8U1P9,100,100,A,"Pyrococcus furiosus"

Added: pkg/CHNOSZ/inst/extdata/fasta/rubisco.fasta
===================================================================
--- pkg/CHNOSZ/inst/extdata/fasta/rubisco.fasta	                        (rev 0)
+++ pkg/CHNOSZ/inst/extdata/fasta/rubisco.fasta	2017-02-10 15:39:22 UTC (rev 140)
@@ -0,0 +1,239 @@
+>tr|A0B9K9|A0B9K9_METTP Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1616 PE=3 SV=1
+MMQRDVVARYRVETDLPMRKAAEAIAAEQSTGTWTEVRGAESDLAASVLSIDGNTVEIEF
+PVELFEPGNIPQYLSVIAGNLFGLEALKKVRLVDVDFPESLVRAHSGPKFGIEEARRIID
+AYNRPLVGTIVKPKVGLNPSQTAEVAGAAVRGGLDLVKDDETLTDQKFCPMERRVEEVMA
+EFDRVESETGKKAFYAVNVTTGADTILERAERAIDRGANMLMVDVLTAGFSALEALARGV
+DLPIHVHRTMHGAMTRDRAHGISMLVIAKLVRMAGGTNLHTGSYVGKMASDIEENDQCRD
+ALREDWYGLKRVFPVASGGIHPGKVAGNLDGYGIDCIVQAGGGVHGHPDGTTAGARAMVQ
+AVEAWLSGIPVMEYAERHKELKRALERWGV
+>tr|A1RZJ5|A1RZJ5_THEPD Ribulose 1,5-bisphosphate carboxylase large subunit OS=Thermofilum pendens (strain Hrk 5) GN=Tpen_1227 PE=3 SV=1
+MPEEFEPYGEFVVKSYLPDPDKDVIVTFRVTPSEGFTIEDAAGGVAAESSVGTWTTLYQW
+YDKSRIDRLKGKAYYMESLGDGSYILRVAYPVELFEEGNMPAFLASVAGNIFGMRRVRSL
+RVEDIYLPEAFLKHFKGPSQGVEGVRGKLKIWGRPIIGTVPKPKVGYSPEEVEKLAYEIL
+VGGMDFVKDDENLAGPSYCRFEERAKAIMKAIDRAEKETGERKAWLANITADVREMERRL
+KLVAELGNTHVMVDVVIAGWSSLTYVRDLAADYKLAIHGHRAFHAAFTRNPYHGVSMFTL
+AKLYRIIGVDQLHVGTPEVGKLEAKAVDVIRMARLLREQTYKPDIEDGLHMQQPFPGIKP
+AFPVSSGGLHPGTLPAVIKAMGVDTVIQVGGGVVGHPDGPRAGAAAARQAVEAYLEGVPL
+QEYAKTHRELARALEKWGQVIPV
+>tr|A3DND9|A3DND9_STAMF Ribulose bisphosphate carboxylase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rbcL PE=3 SV=1
+MPHKFEPYHSYIDKNYVPDLENDIIAVFRIKPAKGFTIEDAAGGVAAESSTGTWTTLYPW
+YNTERVRKLSGKAYYFKDLGDGSWIVRIAYPVELFEEANMPGLLASIAGNVFGMKRVEGL
+RLEDIYLPKKFLQYFKGPSKGVEGVKKIFRVTDRPIVGTVPKPKVGYSPEEVEKLAYELL
+VGGMDYIKDDENLTSPSFCRFSERAKHIMRAIDRAEKETGERKVWFANITSDIREMEKRL
+KLVADYDNPYVMVDVVVTGWSTLTYIRDLAEEYGLAIHAHRAMHAAFTRNPYHGISMYVL
+AKLYRIIGVDQLHIGTAGVGKLEGGKIDVIRYARILREKHFKPDPDDVFHIEQEMYHIKP
+AMPVSSGGLHPGNLPGVIDALGTELVLQIGGGVLGHPDGPRAGAMAVRQSLEAILKGIPL
+DEYAKTHRELARALEKWGFAKPI
+>tr|A8F7V4|A8F7V4_THELT Ribulose-bisphosphate carboxylase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=Tlet_1684 PE=3 SV=1
+MIEYETRYHFSQERFRVKYQIFEESKRAKEIAEAICVEQTIEFPIELTGNSIRENVVGKI
+EEIQNNHNSTVVTISYPVETVGNEPAQFFNVIMGNCSLFPNLKIIGLQLSPSIENIFPGP
+RYGISGLRKLLSIYNRPLLATAIKPMGLSTDQLAQMAYNLALGGVDIIKDDHGLADQPFS
+KFKDRVLKVTEAIHKANRETGFHTIYAPNITSNEQTMLKQAEFVKEAGSGALLVSPALSG
+FSSFITLRENTDLPILSHPAFLGGYLSIMDFDVLFGTIQRMIGADVVIFPNYGGRFTFSK
+EDCRKINHGLKKPFGSFKEIFPSPAGGMNIDSCGDIVSFYNKDVVLLIGGALHKAGADLT
+ENVKAFKAQVEKIHVR
+>tr|B9KXE5|B9KXE5_THERP Ribulose bisphosphate carboxylase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=trd_0132 PE=3 SV=1
+MSFVRATYYVETPLTLEAAAEALASEQSTGTFIAVPLETAELKARYRARIERIELIETRS
+RPTLPGSRPASGSYQCGFVELAFPLENMGCNLPTLMATLAGNLFELSELSAIRLVDLDLP
+DEFAQAYTGPRFGIQGTRDIAQVYDRPLIGTIIKPSVGLSPEQTAVVVRELVEAGIDFIK
+DDELMANPPHNPLPARARAVMRVIRDYADRTGKYVIYAFNISDRLEDMIRHIEILVEEGA
+RCCMVSLNWVGIAAFDYLRRNCPLIIHGHRNGWGMMTRAPGLGMDFRAYQKIWRLAGVDH
+LHVNGLANKFWEPDDSVVRSIHDMLQPLFGGYFAMPVISSGQWGGQAPDTYRRCRTIDLL
+YLAGGGIFAHPHGVAAGIRAIREAWEAAVAGISLAEYAQTHPDLAAALHHFGTARRGR
+>tr|F8IID7|F8IID7_ALIAT Ribulose-bisphosphate carboxylase OS=Alicyclobacillus acidocaldarius (strain Tc-4-1) GN=mtnW PE=3 SV=1
+MVATYRLRDRKDKLEARAEGIAVGLTIGTWTDLPAARKSEVEKHCGRVEGIRVLEERPEG
+DVVAEIDIAYPVANLNGTFASLLVTVFGKLSMDGEIRLERLQMPDSLVRQFPGPKFGVEG
+VRQRLGAYHRPLVMSIFKACAGLTLDELVEAFGEQAEGGVDLVKDDEIFFTEAYATPEDR
+VRAYAAKADEIAQRTGRRTAYAVNLTGPVHSLRERARRLADLGAGALLVNVVAYGYDVVA
+DLARDPEVHVPILAHPAVSGALYGSPNYGIAADIVLGQLMRLAGADIGIFPSMYGSVTLG
+REATDRLLQHLRAEGVHKPVLPAPSAGIYPGLVPRLYQDFGVDLVLNAGGGIHGHPGGAR
+MGGRAFFDAIWAVEHGVPLEEAAKDRPALRQALEKWGMPS
+>tr|F9ZLP0|F9ZLP0_ACICS Ribulose bisphosphate carboxylase large chain OS=Acidithiobacillus caldus (strain SM-1) GN=cbbL PE=3 SV=1
+MAGKYEAGVKEYRHTYWAPDYVPLDSDILACFKIVPQPGVDREEAAAAVAAESSTGTWTT
+VWTDLLTDMDYYKGRAYRIEDVPGDDTAFYAFIAYPIDLFEEGSVVNVFTSLVGNVFGFK
+AVRSLRLEDVRFPLHYVMTCNGPAHGIQVERDKMDKYGRPLLGCTIKPKLGLSAKNYGRA
+VYEALRGGLDFTKDDENVNSQPFMRWRDRFLFVADAIRNAEAQTGERKGHYLNVTAPSPE
+EMYERAEFAKELGMPIIMHDFLTGGFCANTGLARWCRKNGVLLHIHRAMHAVIDRNPHHG
+IHFRVLTKALRLSGGDHLHTGTVVGKLEGDRASTLGWIDLLRESYIPEDRSRGIFFDQDW
+GSMPGAFAVASGGIHVWHMPALVNIFGDDSVLQFGGGTLGHPWGNAAGAAANRVALEACV
+EARNRGVEIEKEGKEVLMNAARHSPELKIALETWKEIKFEFDTVDKLDVQNR
+>tr|G8LZL2|G8LZL2_CLOCD Ribulose 1,5-bisphosphate carboxylase, large subunit OS=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) GN=Clocl_1256 PE=3 SV=1
+MFFSEYKEPKLSGERFSVIYKLSGNEKEAYEKAKDLCLEQTVEFPGELLPDGAIRDSIVG
+RIESFKKHDSMHYMATVSYAVETSSNELTQLLNVVFGNSSIKPGIRVEKLLLSDVILKNF
+KGPRFGRDGLREYLGIKNRPLLFTALKPMGLSSEALADLAYKFALGGIDLIKDDHGLSNQ
+SFSPFEERVELCVNAINKANRETGGKSVYVPNITAPFSEMVDRARKAKELGAGGLLISPG
+LAGFDAMREISEDENINLPVFSHPAFLGTFVMSNETGISHGALLGQIMRLAGADATIYPN
+FGGRFSFSREECESIAVCTSEKMGNLKPIFPCPAGGMSLGSIPESLKVYGKDVIFLVGGG
+LFRHGPNLIENCAYFRKLIENIDLKEIF
+>tr|G9FID8|G9FID8_9EUKA Ribulose bisphosphate carboxylase large chain OS=Phaeocystis antarctica GN=rbcL PE=3 SV=1
+MSQAVESRTRIKSERYESGVIPYAKMGYWDPDYAIKETDILALFRCTPQPGVDPVEAGAA
+LAGESSTATWTVVWTDLLTACDLYRAKAYRVDPVPSTPDTYFVYVAYDLDLFEEGSLANL
+TASIIGNIFGFKAVKALRLEDMRMPVALLKTYQGPACGLIVERERMDKFGRPLLGATVKP
+KLGLSGKNYGRVVFEGLKGGLDFLKDDENINSQPFMRYRERFLYSMEGVNHAAATSGEIK
+GHYLNSTAATMEDMYERAEFAVELGSVIVMIDLVIGYTAIQSMAKWCRKVDCILHLHRAG
+NSTYSRQKNHGMNFRVICKWMRMAGVDHIHAGTVVGKLEGDPLMIKGFYNTLLDFKSDIN
+LPCGMFFAQDWASLRKCVPVASGGIHCGQMHQLIDYLGDDVILQFGGGTIGHPDGIQAGA
+TANRVALECMVLARNEGRDYVAEGPQILRDAAKTCGPLQTALDLWKDITFNYASTDTADF
+VETATANR
+>tr|K4MAK9|K4MAK9_9EURY Ribulose bisphosphate carboxylase OS=Methanolobus psychrophilus R15 GN=Mpsy_0328 PE=3 SV=1
+MSLTEEQLVQSLNPKQQGYVDLKLADPRNGEYLLGVFHLVPEGRLNMLQTAAEVAAESST
+GTNFKVNTETPFSKVMNALVYQLDLERDLVWIAYPWRLFDRGGNVQNILTYIVGNILGMK
+EVKALKLMDVWFPPSMLEQYDGPSYTVDDMRKYLGVYNRPILGTIVKPKMGLTSAEYAEV
+CYDFWVGGGDFVKNDEPQANQDFCPYDKMVKHVKEAMDKAVKETGKKKVHSFNVSAADFD
+TMIKRCEMIVNAGFEPGSYAFLIDGITAGWMAVQTLRRRYPGVFIHFHRAGHGAFTRPEN
+PLGFSVLVLSKFARLAGASGIHTGTAGVGKMKGTPQEDVVAANGILYLRSKGHFFDQSWS
+KIPDLDKDVIALVNEDTAHHAILEDDSWRAMKKCCPIVSGGLNPIRLKPFIDVMGNVDFI
+TTMGSGVHAHPGGTQGGAKALVQACEAYLKNMDIEQYAKDHEELAQAIEYFSKASKDAM
+>tr|L0RHZ1|L0RHZ1_9DELT Ribulose bisphosphate carboxylase OS=Desulfovibrio hydrothermalis AM13 = DSM 14728 GN=cbbM PE=3 SV=1
+MSQYDQTSRYANFDLKEDQLIADGNHVLCAYIFKPAEGHGHIEVAAHFAAESSTGTNVEV
+CTTDDFTKGVDALVYEVSEAKDGDYLMKIAYPVELFDRNIIDGRAMLASFLTLCIGNNQG
+MGDVAYAKMYDFYVPRQYLELFDGPAKNIADFWRMLGRPMENGGMIVGTIVKPKLGLRPG
+PFADACYKFWLGGDFVKNDEPQGNQVFAPLKETITAVADAMKRAQDETGEAKVFSANITA
+DDPMEMIARGEFILDAFGEDASRVAFLVDGYVAGPTSITTARRNFPNQFLHYHRAGHGAV
+TSPQAKRGYTAFVLSKMSRLQGASGIHTGTMGFGKMEGEMADKNIAYMIEREEAQGPYFK
+QKWYGMKATTPMISGGMNALRLPGFFENLGHSNICQTSGGGAFGHLDGPTAGAISLRQSH
+EAWQQGVDLVEYAKAHKELARAFESFPQDADKFYPDWRKQLSL
+>tr|M9R7V1|M9R7V1_9RHOB Ribulose bisphosphate carboxylase-like protein OS=Octadecabacter antarcticus 307 GN=OAN307_c00690 PE=4 SV=1
+MTRLTATYEIESPVGVQRAAEVMAGEQSTGTFVRLASETDALRDRSAARLDHVDITGTSE
+HPALPCRLSAETYEQGRVTISWPMDNFGPSLPNILATVAGNLFELAELSAIRLVDLGIPD
+ALAKGCPGPQFGITGTRKLMGVPSGPMIGTIIKPSVGLSAEQTAALAGDLAQAGIDFIKD
+DELQGNGPACPFDGRAKLVMDVLNEAAQKAGRKVMYAFNITDEIDVMRRNIDLLESLGAT
+CAMVSLNSIGLAGLRAIRDHSPLPIHAHRNGWGLMSRSPHVGIKYLAMQKLWRLAGSDHL
+HVNGLGNKFTEGDTVVTNAARAVQAPLNGATPHAALPVFSSGQTAWQVGPSMELLGNDDF
+LFCAGGGIMSHPYGPAVGITSLRQAAAAQKAGEKVEDYAKDHPELAAALTTFKSAVNRS
+>sp|O28635|RBL_ARCFU Ribulose bisphosphate carboxylase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rbcL PE=1 SV=1
+MAEFEIYREYVDKSYEPQKDDIVAVFRITPAEGFTIEDAAGAVAAESSTGTWTSLHPWYD
+EERVKGLSAKAYDFVDLGDGSSIVRIAYPSELFEPHNMPGLLASIAGNVFGMKRVKGLRL
+EDLQLPKSFLKDFKGPSKGKEGVKKIFGVADRPIVGTVPKPKVGYSAEEVEKLAYELLSG
+GMDYIKDDENLTSPAYCRFEERAERIMKVIEKVEAETGEKKSWFANITADVREMERRLKL
+VAELGNPHVMVDVVITGWGALEYIRDLAEDYDLAIHGHRAMHAAFTRNAKHGISMFVLAK
+LYRIIGIDQLHIGTAGAGKLEGQKWDTVQNARIFSEVEYTPDEGDAFHLSQNFHHIKPAM
+PVSSGGLHPGNLEPVIDALGKEIVIQVGGGVLGHPMGAKAGAKAVRQALDAIISAIPLEE
+HAKQHPELQAALEKWGRVTPI
+>sp|O58677|RBL_PYRHO Ribulose bisphosphate carboxylase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rbcL PE=1 SV=1
+MMVLRMKVEWYLDFVDLNYEPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWK
+LPEMAKRSMAKVFYLEKHGEGYIAKIAYPLTLFEEGSLVQLFSAVAGNVFGMKALKNLRL
+LDFHPPYEYLRHFKGPQFGVQGIREFMGVKDRPLTATVPKPKMGWSVEEYAEIAYELWSG
+GIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITGPVNIMEKRAEM
+VANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLALAK
+AARMIGVDQIHTGTAVGKMAGNYEEIKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELI
+RLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIEGVDLDEKAKSSPELKKSLREVG
+LSKAKVGVQH
+>sp|P00874|RBL_MAIZE Ribulose bisphosphate carboxylase large chain OS=Zea mays GN=rbcL PE=3 SV=2
+MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQLGVPPEEAGAAVAAE
+SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVPGDPDQYICYVAYPLDLFEEGSVTNMFTSI
+VGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
+SAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKAQAETGEIKGHYL
+NATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTTLSHYCRDNGLLLHIHRAMHAV
+IDRQKNHGMHFRVLAKALRMSGGDHIHSGTVVGKLEGEREITLGFVDLLRDDFIEKDRSR
+GIFFTQDWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAAN
+RVALEACVQARNEGRDLAREGNEIIKAACKWSAELAAACEIWKEIKFDGFKAMDTI
+>sp|P0C916|RBL1A_THIFE Ribulose bisphosphate carboxylase large chain 1 OS=Thiobacillus ferrooxidans GN=cbbL1 PE=3 SV=1
+MAVKTYEAGVKDYRQTYWAPEYVPLDSDILACFKITPQPGVDREEAAAAVAAESSTGTWT
+TVWTDLLTDMDYYKGRAYRIEDVPGDDTCFYAFVAYPIDLFEEGSVVNVFTSLVGNVFGF
+KAVRALRLEDVRFPLAYVKTCNGPPHGIQVERDKMNKYGRPMLGCTIKPKLGLSAKNYGR
+AVYECLRGGLDFTKDDENVNSQPFIAWRDRFLFVADAIHTAEAETGERKGHYLNVTAPSP
+EEMYERAEFAKELNMPIIMHDFLTGGFCANTGLARWCRKNGVLLHIHRAMHAVVDRNPHH
+GIHFRVLAKALRLSGGDHLHTGTVVGKLEGDRAATQGWVDLLRESFVPEDAGRGIFFDQD
+WGSMPGVFAVASGGIHVWHMPALLAIFGDDAIFQFGGGTLGHPWGNAAGAAANRVALEAC
+VEARNEGRDLEREGKDILTNAAKDSPELKIALETWKEIKFEFDTVDKLDVVNR
+>sp|P37393|RBL_CYACA Ribulose bisphosphate carboxylase large chain OS=Cyanidium caldarium GN=rbcL PE=3 SV=2
+MAQSVQERTRLKNKRYESGVIPYAKMGYWDPNYVVKDTDILALFRVTPQPGVDPIEASAA
+VAGESSTATWTVIWCDLLTACDVYRAKAYRVDQVPNSPDQYFAYIAYDLDLFEEGSIANL
+TASIIGNVFGFKALAALRLEDMRIPIGYLKTFQGPATGVVVERERLNMFGKPFLGATVKP
+KLGLSSKNYGRVVYEGLKGGLNFLKDDENINSQPFMRWRERFLYVMEGVNRASAATGEIK
+GSYLNVTAATMEEMYNRAACAKEVGSIIIMIDLVIGYTAIQSMAIWARENNMILHLHRAG
+NSTYARQKNHGINFRVICKWMRMAGVDHIHAGTVVGKLEGDPIIVKGFYNTLLLPKLDVN
+LPQGLFFEMDWASLRKTVPVASGGIHAGQMHLLLKYLGDDVVLQFGGGTLGHPDGIQAGA
+TANRVALEAIVLARNEGRDYVNEGPQILKEAARTCGPLQTSLDLWKDISFNFTSTDTADF
+VETPTANV
+>tr|P72383|P72383_9FIRM Ribulose bisphosphate carboxylase large chain OS=Sulfobacillus acidophilus GN=cbbL PE=3 SV=2
+MTTEENKNRWAAGVTPYSKMGYWQPDYQPKDTDILCAFRFVPQEGVDPEEAAAAVAGESS
+TATWTVVWTDRLTAHEHYQAKAYRVVPVPGTDQYIAYIAYDLDLFEEGSIANLTASIIGN
+VFGFKALKSLRLEDMRIPPHYVKTFQGPAHGIVMEREYLNKYGRPLLGATVKPKLGLSAR
+NYARVVYEALRGGLDFTKDDENINSQPFMRWRDRYLFVMEAVNKATADTGEIKGHYLNVT
+AATMEDIYERADFAKQIGSPIIMIDLIVGYTAIQSIAKWARKNGVLLHLHRAGHSTYTRQ
+KTHGVSFRVIAKWMRLAGVDHIHAGTVLGKLEGDPRTTAGYYQTLRGMKYDADPTIGLYF
+EQDWASLPGVMPVASGGIHAGQMHQLIDLLGEDVVLQFGGGTFGHPHGIAAGAAANRIAC
+EAIIQARNEGRDYVNEGPEILAEAAKWSPALRAALDTWKDVTFNFESTDTPDVLPTPSF
+>tr|Q0EX22|Q0EX22_9PROT Ribulose bisphosphate carboxylase large chain OS=Mariprofundus ferrooxydans PV-1 GN=rbcL PE=3 SV=1
+MAVKTYQAGVKDYRETYWMPEYKLKDTDFLACFKITPQAGVPREEAAAAVAAESSTGTWT
+TVWTDLLTDLDYYKGRAYAIEDVPGDDEAFYAFIAYPIDLFEEGSVVNVLTSLVGNVFGF
+KAVRALRLEDVRIPLAYVMTCNGPPHGIQVERDKMNKYGRPLLGCTIKPKLGLSAKNYGR
+ACYEGLRGGLDFTKDDENVNSQPFMRWRQRFDFVMEAIHKAEAETGERKGHYLNVTAPTP
+EEMYKRAEYAKELGAPIIMHDYLTGGFTANTGLAQWCRDNGMLLHIHRAMHAVLDRNPRH
+GIHFRVLTKMLRLSGGDHLHSGTVVGKLEGDRDATLGWIDLMRDSFVKEDRSRGIMFDQD
+WGSMPGVLPVASGGIHVWHMPALVNIFGDDSVLQFGGGTLGHPWGNAAGAAANRVAVEAC
+VEARNQGRALEKEGKDILTTAAESSPELKIAMETWKEIKFEFDTVDKLDVAHK
+>tr|Q12TQ0|Q12TQ0_METBU Ribulose-1,5-bisphosphate carboxylase-oxygenase type III OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_2322 PE=3 SV=1
+MSLIYEDLVKSLDSKQQAYVDLKLPDPTNGEFLLAVFHMIPGGDLNVLQAAAEIAAESST
+GTNIKVSTETAFSRTMNARVYQLDLERELVWIAYPWRLFDRGGNVQNILTYIIGNILGMK
+EIQALKLMDIWFPPSMLEQYDGPSYTVDDMRKYLDVYDRPILGTIVKPKMGLTSAEYAEV
+CYDFWVGGGDFVKNDEPQANQDFCPYEKMVAHVKEAMDKAVKETGQKKVHSFNVSAADFD
+TMIERCEMITNAGFEPGSYAFLIDGITAGWMAVQTLRRRYPDVFLHFHRAAHGAFTRQEN
+PIGFSVLVLSKFARLAGASGIHTGTAGIGKMKGTPAEDVVAAHSIQYLKSPGHFFEQTWS
+KIMDTDKDVINLVNEDLAHHVILEDDSWRAMKKCCPIVSGGLNPVKLKPFIDVMENVDFI
+TTMGSGVHSHPGGTQSGAKALVQACDAYLQGMDIEEYAKDHKELAEAIEFYLNR
+>sp|Q2JIP3|RBL_SYNJB Ribulose bisphosphate carboxylase large chain OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=cbbL PE=3 SV=1
+MAYSATQSKSGYQAGVKDYRLTYYTPDYTPKDTDVLACFRVTPQPGVPPEEAGAAVAAES
+STGTWTTVWTDLLTDLDRYKGRCYDIEPVPGEDNQYFCFVAYPLDLFEEGSVTNMLTSIV
+GNVFGFKALKALRLEDVRIPVAYLKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLS
+AKNYGRAVYEALRGGLDFTKDDENINSQPFQRWRDRYLFVMEAVHKAQAETGEIKGHYLN
+VTAPTCEEMFKRAEFAKELGAPIIMHDYLTAGFTANTSLAKWCRDNGILLHIHRAMHAVI
+DRQKNHGIHFRVLAKCLRMSGGDHLHSGTVVGKLEGDRAITMGFVDLMRENYVEADRSRG
+IFFTQDWASMPGVMPVASGGIHVWHMPALVEIFGDDSVLQFGGGTLGHPWGNAPGATANR
+VALEACIQARNEGRDLAREGNDIIREAAKWSPELAAACELWKEIKFEFKAVDTL
+>sp|Q51856|RBL_PSEHY Ribulose bisphosphate carboxylase large chain OS=Pseudomonas hydrogenothermophila GN=cbbL PE=3 SV=1
+MSQPKRYEAGVKEYRETYWEPTYVPKDSDFLAVFKIVPQPGVPREESAAAVAAESSTATW
+TTVWTDLLTDLYYYKGRAYAIEDVPGDDEAFYAFIAYPMGLFEEGSVVNVFTSLVGNVFG
+FKAVRSLRLEDVRIPLWFVTTCPGPPHGIYVERDKLNKYGRPLLGCTIKPKLGLSAKNYG
+RAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCQEAIEKAQAETGERKGHYMNVTGPT
+MEEIYKRAEFAKEIGTPIIMIDYLTVGWAATQSLSKWCRDNGMLLHVHRAMHAVIDRNPK
+HGINFRVLAKIMRLIGGDHLHSGTVVGKLEGDRAATLGWIDLMRDRYVKADRSRGIFFDQ
+DWGQMPGMFPVASGGIHVWHMPALVSIFGDDSVLQFGGGTIGHPWGNAAGACANRVALEA
+CVKARNEGLPIEKMGREILTEAAKSCPELKVAMETWKEVKFDFDTVDKLDVQHR
+>sp|Q58632|RBL_METJA Ribulose bisphosphate carboxylase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rbcL PE=1 SV=2
+MDYINLNYRPNEGDLLSCMVIKGENLEKLANEIAGESSIGTWTKVQTMKSDIYEKLRPKV
+YEIKEIGEENGYKVGLIKIAYPLYDFEINNMPGVLAGIAGNIFGMKIAKGLRILDFRFPA
+EFVKAYKGPRFGIEGVRETLKIKERPLLGTIVKPKVGLKTEEHAKVAYEAWVGGVDLVKD
+DENLTSQEFNKFEDRIYKTLEMRDKAEEETGERKAYMPNITAPYREMIRRAEIAEDAGSE
+YVMIDVVVCGFSAVQSFREEDFKFIIHAHRAMHAAMTRSRDFGISMLALAKIYRLLGVDQ
+LHIGTVVGKMEGGEKEVKAIRDEIVYDKVEADNENKFFNQDWFDIKPVFPVSSGGVHPRL
+VPKIVEILGRDLIIQAGGGVHGHPDGTRAGAKAMRAAIEAIIEGKSLEEKAEEVAELKKA
+LEYWK
+>sp|Q8DIS5|RBL_THEEB Ribulose bisphosphate carboxylase large chain OS=Thermosynechococcus elongatus (strain BP-1) GN=cbbL PE=1 SV=1
+MAYTQSKSQKVGYQAGVKDYRLTYYTPDYTPKDTDILAAFRVTPQPGVPFEEAAAAVAAE
+SSTGTWTTVWTDLLTDLDRYKGCCYDIEPLPGEDNQFIAYIAYPLDLFEEGSVTNMLTSI
+VGNVFGFKALKALRLEDLRIPVAYLKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
+SAKNYGRAVYECLRGGLDFTKDDENINSQPFQRWRDRFLFVADAIHKAQAETGEIKGHYL
+NVTAPTCEEMLKRAEFAKELEMPIIMHDFLTAGFTANTTLSKWCRDNGMLLHIHRAMHAV
+MDRQKNHGIHFRVLAKCLRMSGGDHIHTGTVVGKLEGDKAVTLGFVDLLRENYIEQDRSR
+GIYFTQDWASMPGVMAVASGGIHVWHMPALVDIFGDDAVLQFGGGTLGHPWGNAPGATAN
+RVALEACIQARNEGRDLMREGGDIIREAARWSPELAAACELWKEIKFEFEAQDTI
+>sp|Q8THG2|RBL_METAC Ribulose bisphosphate carboxylase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rbcL PE=1 SV=1
+MRRDYVDPGYSPKDTDLICEFHIEPAAGISFEEASTHMAGESSIDSWTEISTLSPELAAR
+LKPHVFYLDADTQTVRVAYSEDLFELGSVPQVLSAVAGNIFSMKIVDNLRLQDITFPKSM
+LREFEGPNFGLPGVRDIVGVKDRPLVGTIVKPKVGLTSEMHAEVAYNAFAGGCDLVKDDE
+NLTDQKFNGFEKRAELTLKIAEKAEAETGERKMYLCNITAPTCEEMIRRLHVLKDLGASY
+AMIDIVPTGWTALQTLREAAADEGLALHAHRCMHSAFTRNPRHGVSMLLVAKLCRLIGLD
+QLHIGTVVGKMHGDKDEVLSIRDECVLDTVPADPEQHVLAQDWGGLKPMFPVASGGLAPT
+MIPDLYSIFGKEVIMQFGGGIHAHPMGTAAGAAACRQALEASLEGISLQDYAKDHKELEA
+ALGKWLEK
+>sp|Q8U1P9|RBL_PYRFU Ribulose bisphosphate carboxylase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rbcL PE=3 SV=1
+MKVEWYLDFVDLDYTPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKMPEMA
+KRSMAKVFYLEKSGEGYIAKIAYPLTLFEEGSIVQLLSAIAGNIFGMKALKNLRLLDFHP
+PYEYLRHFKGPQYGVKGIREFMGVKERPLTATVPKPKMGWSVDEYAEIAYELWSGGIDLL
+KDDENFTSFPFNRFEERVKKLYRIRDIVEAETEERKEYLINITGSVDVMEKRAELVANEG
+GQYVMIDIIVTGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPKHGITMYAIAKLARMI
+GVDQIHTGTAVGKMAGDYEEVKRINDFLLSKWEHIREVFPVASGGLHPGLMPELIRLFGK
+DLVIQAGGGVMGHPDGPRAGAKALRDAIDAALEGVDLEEKAKSSPELKKALDKWGYLKPK
+>sp|Q9ZI34|RBL_BRAJA Ribulose bisphosphate carboxylase large chain OS=Bradyrhizobium japonicum (strain USDA 110) GN=cbbL PE=1 SV=1
+MNAHTGTVRGKERYRSGVMEYKRMGYWEPDYTPKDTDVIALFRVTPQEGVDPIEASAAVA
+GESSTATWTVVWTDRLTAAEKYRAKCHRVDPVPGTPGSYFAYIAYDLDLFEPGSIANLSA
+SIIGNVFGFKPLKALRLEDMRFPVAYVKTFQGPATGIVVERERLDKFGRPLLGATVKPKL
+GLSGRNYGRVVYEALKGGLDFTKDDENINSQPFMHWRDRFLYCIEAVNRAQAASGEVKGT
+YLNITAGTMEDMYERAEFAKELGSCIVMIDLVIGYTAIQSMAKWARRNDMILHLHRAGHS
+TYTRQKSHGVSFRVIAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDVCREDFNPTKLE
+HGLFFDQSWASLNKMMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPMGIAAGAIA
+NRVALEAMILARNEGRDYVHEGPEILAKAAQTCTPLKSALEVWKDVTFNYQSTDTPDFVP
+TALETV

