[Car-commits] error installing the car package on MacoS - please help

Sat Nov 24 18:15:35 CET 2018

I am running macOS Sierra 10.12.6 and unable to install the 'car' package Warning in install.packages :  installation of package ‘car’ had non-zero exit status
ThanksRam
The full transcript of the session follows

R version 3.5.1 (2018-07-02) -- "Feather Spray"Copyright (C) 2018 The R Foundation for Statistical ComputingPlatform: x86_64-apple-darwin14.5.0 (64-bit)
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> library()> install.packages("car")also installing the dependencies ‘SparseM’, ‘minqa’, ‘mgcv’, ‘pbkrtest’, ‘quantreg’, ‘lme4’
trying URL 'https://cran.rstudio.com/src/contrib/SparseM_1.77.tar.gz'Content type 'application/x-gzip' length 756317 bytes (738 KB)==================================================downloaded 738 KB
trying URL 'https://cran.rstudio.com/src/contrib/minqa_1.2.4.tar.gz'Content type 'application/x-gzip' length 53548 bytes (52 KB)==================================================downloaded 52 KB
trying URL 'https://cran.rstudio.com/src/contrib/mgcv_1.8-26.tar.gz'Content type 'application/x-gzip' length 897979 bytes (876 KB)==================================================downloaded 876 KB
trying URL 'https://cran.rstudio.com/src/contrib/pbkrtest_0.4-7.tar.gz'Content type 'application/x-gzip' length 156406 bytes (152 KB)==================================================downloaded 152 KB
trying URL 'https://cran.rstudio.com/src/contrib/quantreg_5.36.tar.gz'Content type 'application/x-gzip' length 1640340 bytes (1.6 MB)==================================================downloaded 1.6 MB
trying URL 'https://cran.rstudio.com/src/contrib/lme4_1.1-19.tar.gz'Content type 'application/x-gzip' length 4120276 bytes (3.9 MB)==================================================downloaded 3.9 MB
trying URL 'https://cran.rstudio.com/src/contrib/car_3.0-2.tar.gz'Content type 'application/x-gzip' length 447952 bytes (437 KB)==================================================downloaded 437 KB
* installing *source* package ‘SparseM’ ...** package ‘SparseM’ successfully unpacked and MD5 sums checked** libsgfortran   -fPIC  -I/anaconda3/include -L/anaconda3/lib  -c bckslv.f -o bckslv.omake: gfortran: No such file or directorymake: *** [bckslv.o] Error 1ERROR: compilation failed for package ‘SparseM’* removing ‘/anaconda3/lib/R/library/SparseM’Warning in install.packages :  installation of package ‘SparseM’ had non-zero exit status* installing *source* package ‘minqa’ ...** package ‘minqa’ successfully unpacked and MD5 sums checked** libsgfortran   -fPIC  -I/anaconda3/include -L/anaconda3/lib  -c altmov.f -o altmov.omake: gfortran: No such file or directorymake: *** [altmov.o] Error 1ERROR: compilation failed for package ‘minqa’* removing ‘/anaconda3/lib/R/library/minqa’Warning in install.packages :  installation of package ‘minqa’ had non-zero exit status* installing *source* package ‘mgcv’ ...** package ‘mgcv’ successfully unpacked and MD5 sums checked** libsclang -I"/anaconda3/lib/R/include" -DNDEBUG   -I/anaconda3/include   -fPIC  -I/anaconda3/include  -c coxph.c -o coxph.oclang -I"/anaconda3/lib/R/include" -DNDEBUG   -I/anaconda3/include   -fPIC  -I/anaconda3/include  -c discrete.c -o discrete.oclang -I"/anaconda3/lib/R/include" -DNDEBUG   -I/anaconda3/include   -fPIC  -I/anaconda3/include  -c gdi.c -o gdi.oclang -I"/anaconda3/lib/R/include" -DNDEBUG   -I/anaconda3/include   -fPIC  -I/anaconda3/include  -c init.c -o init.oclang -I"/anaconda3/lib/R/include" -DNDEBUG   -I/anaconda3/include   -fPIC  -I/anaconda3/include  -c magic.c -o magic.oclang -I"/anaconda3/lib/R/include" -DNDEBUG   -I/anaconda3/include   -fPIC  -I/anaconda3/include  -c mat.c -o mat.oclang -I"/anaconda3/lib/R/include" -DNDEBUG   -I/anaconda3/include   -fPIC  -I/anaconda3/include  -c matrix.c -o matrix.oclang -I"/anaconda3/lib/R/include" -DNDEBUG   -I/anaconda3/include   -fPIC  -I/anaconda3/include  -c mgcv.c -o mgcv.oclang -I"/anaconda3/lib/R/include" -DNDEBUG   -I/anaconda3/include   -fPIC  -I/anaconda3/include  -c misc.c -o misc.oclang -I"/anaconda3/lib/R/include" -DNDEBUG   -I/anaconda3/include   -fPIC  -I/anaconda3/include  -c mvn.c -o mvn.oclang -I"/anaconda3/lib/R/include" -DNDEBUG   -I/anaconda3/include   -fPIC  -I/anaconda3/include  -c qp.c -o qp.oclang -I"/anaconda3/lib/R/include" -DNDEBUG   -I/anaconda3/include   -fPIC  -I/anaconda3/include  -c soap.c -o soap.oclang -I"/anaconda3/lib/R/include" -DNDEBUG   -I/anaconda3/include   -fPIC  -I/anaconda3/include  -c sparse-smooth.c -o sparse-smooth.oclang -I"/anaconda3/lib/R/include" -DNDEBUG   -I/anaconda3/include   -fPIC  -I/anaconda3/include  -c tprs.c -o tprs.oclang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/anaconda3/lib/R/lib -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ -Wl,-rpath,/anaconda3/lib -L/anaconda3/lib -L/anaconda3/lib -lgfortran -L/anaconda3 -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -framework Accelerate -L/Users/travis/miniconda3/conda-bld/r-base_1538210616116/_build_env/lib/gcc/x86_64-apple-darwin11.4.2/4.8.5 -L/Users/travis/miniconda3/conda-bld/r-base_1538210616116/_build_env/lib/gcc -L/Users/travis/miniconda3/conda-bld/r-base_1538210616116/_build_env/lib -lc++ -lgfortran -lquadmath -lm -L/anaconda3/lib/R/lib -lR -lintl -lc++ -liconv -lc -Wl,-framework -Wl,CoreFoundationld: warning: directory not found for option '-L/Users/travis/miniconda3/conda-bld/r-base_1538210616116/_build_env/lib/gcc/x86_64-apple-darwin11.4.2/4.8.5'ld: warning: directory not found for option '-L/Users/travis/miniconda3/conda-bld/r-base_1538210616116/_build_env/lib/gcc'ld: warning: directory not found for option '-L/Users/travis/miniconda3/conda-bld/r-base_1538210616116/_build_env/lib'ld: warning: ld: warning: object file (coxph.o) was built for newer OSX version (10.12) than being linked (10.9)object file (discrete.o) was built for newer OSX version (10.12) than being linked (10.9)
ld: warning: object file (gdi.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (mat.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (init.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (magic.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (matrix.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (mvn.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (mgcv.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (misc.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (qp.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (soap.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: ld: warning: object file (sparse-smooth.o) was built for newer OSX version (10.12) than being linked (10.9)object file (tprs.o) was built for newer OSX version (10.12) than being linked (10.9)
installing to /anaconda3/lib/R/library/mgcv/libs** R** data** inst** byte-compile and prepare package for lazy loadingError: package or namespace load failed for ‘nlme’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/anaconda3/lib/R/library/nlme/libs/nlme.so':  dlopen(/anaconda3/lib/R/library/nlme/libs/nlme.so, 6): Symbol not found: _libintl_dgettext  Referenced from: /anaconda3/lib/R/library/nlme/libs/nlme.so  Expected in: /anaconda3/lib/R/lib/libR.dylib in /anaconda3/lib/R/library/nlme/libs/nlme.soError : package ‘nlme’ could not be loadedERROR: lazy loading failed for package ‘mgcv’* removing ‘/anaconda3/lib/R/library/mgcv’Warning in install.packages :  installation of package ‘mgcv’ had non-zero exit statusERROR: dependency ‘SparseM’ is not available for package ‘quantreg’* removing ‘/anaconda3/lib/R/library/quantreg’Warning in install.packages :  installation of package ‘quantreg’ had non-zero exit statusERROR: dependency ‘minqa’ is not available for package ‘lme4’* removing ‘/anaconda3/lib/R/library/lme4’Warning in install.packages :  installation of package ‘lme4’ had non-zero exit statusERROR: dependency ‘lme4’ is not available for package ‘pbkrtest’* removing ‘/anaconda3/lib/R/library/pbkrtest’Warning in install.packages :  installation of package ‘pbkrtest’ had non-zero exit statusERROR: dependencies ‘mgcv’, ‘pbkrtest’, ‘quantreg’, ‘lme4’ are not available for package ‘car’* removing ‘/anaconda3/lib/R/library/car’Warning in install.packages :  installation of package ‘car’ had non-zero exit status
The downloaded source packages are in ‘/private/var/folders/r9/r2jscqms20nczq8175jn2j2h0000gn/T/RtmpWHGvHe/downloaded_packages’Updating HTML index of packages in '.Library'Making 'packages.html' ... done
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