From sri_ram at yahoo.com Sat Nov 24 18:15:35 2018 From: sri_ram at yahoo.com (Ram Srinivasan) Date: Sat, 24 Nov 2018 17:15:35 +0000 (UTC) Subject: [Car-commits] error installing the car package on MacoS - please help References: <2081640780.6023809.1543079735801.ref@mail.yahoo.com> Message-ID: <2081640780.6023809.1543079735801@mail.yahoo.com> I am running macOS Sierra 10.12.6 and unable to install the 'car' package?Warning in install.packages :? installation of package ?car? had?non-zero?exit status ThanksRam The full transcript of the session?follows R version 3.5.1 (2018-07-02) -- "Feather Spray"Copyright (C) 2018 The R Foundation for Statistical ComputingPlatform: x86_64-apple-darwin14.5.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY.You are welcome to redistribute it under certain conditions.Type 'license()' or 'licence()' for distribution details. ? Natural language support but running in an English locale R is a collaborative project with many contributors.Type 'contributors()' for more information and'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or'help.start()' for an HTML browser interface to help.Type 'q()' to quit R. > library()> install.packages("car")also installing the dependencies ?SparseM?, ?minqa?, ?mgcv?, ?pbkrtest?, ?quantreg?, ?lme4? trying URL 'https://cran.rstudio.com/src/contrib/SparseM_1.77.tar.gz'Content type 'application/x-gzip' length 756317 bytes (738 KB)==================================================downloaded 738 KB trying URL 'https://cran.rstudio.com/src/contrib/minqa_1.2.4.tar.gz'Content type 'application/x-gzip' length 53548 bytes (52 KB)==================================================downloaded 52 KB trying URL 'https://cran.rstudio.com/src/contrib/mgcv_1.8-26.tar.gz'Content type 'application/x-gzip' length 897979 bytes (876 KB)==================================================downloaded 876 KB trying URL 'https://cran.rstudio.com/src/contrib/pbkrtest_0.4-7.tar.gz'Content type 'application/x-gzip' length 156406 bytes (152 KB)==================================================downloaded 152 KB trying URL 'https://cran.rstudio.com/src/contrib/quantreg_5.36.tar.gz'Content type 'application/x-gzip' length 1640340 bytes (1.6 MB)==================================================downloaded 1.6 MB trying URL 'https://cran.rstudio.com/src/contrib/lme4_1.1-19.tar.gz'Content type 'application/x-gzip' length 4120276 bytes (3.9 MB)==================================================downloaded 3.9 MB trying URL 'https://cran.rstudio.com/src/contrib/car_3.0-2.tar.gz'Content type 'application/x-gzip' length 447952 bytes (437 KB)==================================================downloaded 437 KB * installing *source* package ?SparseM? ...** package ?SparseM? successfully unpacked and MD5 sums checked** libsgfortran? ?-fPIC? -I/anaconda3/include -L/anaconda3/lib? -c bckslv.f -o bckslv.omake: gfortran: No such file or directorymake: *** [bckslv.o] Error 1ERROR: compilation failed for package ?SparseM?* removing ?/anaconda3/lib/R/library/SparseM?Warning in install.packages :? installation of package ?SparseM? had non-zero exit status* installing *source* package ?minqa? ...** package ?minqa? successfully unpacked and MD5 sums checked** libsgfortran? ?-fPIC? -I/anaconda3/include -L/anaconda3/lib? -c altmov.f -o altmov.omake: gfortran: No such file or directorymake: *** [altmov.o] Error 1ERROR: compilation failed for package ?minqa?* removing ?/anaconda3/lib/R/library/minqa?Warning in install.packages :? installation of package ?minqa? had non-zero exit status* installing *source* package ?mgcv? ...** package ?mgcv? successfully unpacked and MD5 sums checked** libsclang -I"/anaconda3/lib/R/include" -DNDEBUG? ?-I/anaconda3/include? ?-fPIC? -I/anaconda3/include? -c coxph.c -o coxph.oclang -I"/anaconda3/lib/R/include" -DNDEBUG? ?-I/anaconda3/include? ?-fPIC? -I/anaconda3/include? -c discrete.c -o discrete.oclang -I"/anaconda3/lib/R/include" -DNDEBUG? ?-I/anaconda3/include? ?-fPIC? -I/anaconda3/include? -c gdi.c -o gdi.oclang -I"/anaconda3/lib/R/include" -DNDEBUG? ?-I/anaconda3/include? ?-fPIC? -I/anaconda3/include? -c init.c -o init.oclang -I"/anaconda3/lib/R/include" -DNDEBUG? ?-I/anaconda3/include? ?-fPIC? -I/anaconda3/include? -c magic.c -o magic.oclang -I"/anaconda3/lib/R/include" -DNDEBUG? ?-I/anaconda3/include? ?-fPIC? -I/anaconda3/include? -c mat.c -o mat.oclang -I"/anaconda3/lib/R/include" -DNDEBUG? ?-I/anaconda3/include? ?-fPIC? -I/anaconda3/include? -c matrix.c -o matrix.oclang -I"/anaconda3/lib/R/include" -DNDEBUG? ?-I/anaconda3/include? ?-fPIC? -I/anaconda3/include? -c mgcv.c -o mgcv.oclang -I"/anaconda3/lib/R/include" -DNDEBUG? ?-I/anaconda3/include? ?-fPIC? -I/anaconda3/include? -c misc.c -o misc.oclang -I"/anaconda3/lib/R/include" -DNDEBUG? ?-I/anaconda3/include? ?-fPIC? -I/anaconda3/include? -c mvn.c -o mvn.oclang -I"/anaconda3/lib/R/include" -DNDEBUG? ?-I/anaconda3/include? ?-fPIC? -I/anaconda3/include? -c qp.c -o qp.oclang -I"/anaconda3/lib/R/include" -DNDEBUG? ?-I/anaconda3/include? ?-fPIC? -I/anaconda3/include? -c soap.c -o soap.oclang -I"/anaconda3/lib/R/include" -DNDEBUG? ?-I/anaconda3/include? ?-fPIC? -I/anaconda3/include? -c sparse-smooth.c -o sparse-smooth.oclang -I"/anaconda3/lib/R/include" -DNDEBUG? ?-I/anaconda3/include? ?-fPIC? -I/anaconda3/include? -c tprs.c -o tprs.oclang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/anaconda3/lib/R/lib -headerpad_max_install_names -mmacosx-version-min=10.9 -lc++ -Wl,-rpath,/anaconda3/lib -L/anaconda3/lib -L/anaconda3/lib -lgfortran -L/anaconda3 -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -framework Accelerate -L/Users/travis/miniconda3/conda-bld/r-base_1538210616116/_build_env/lib/gcc/x86_64-apple-darwin11.4.2/4.8.5 -L/Users/travis/miniconda3/conda-bld/r-base_1538210616116/_build_env/lib/gcc -L/Users/travis/miniconda3/conda-bld/r-base_1538210616116/_build_env/lib -lc++ -lgfortran -lquadmath -lm -L/anaconda3/lib/R/lib -lR -lintl -lc++ -liconv -lc -Wl,-framework -Wl,CoreFoundationld: warning: directory not found for option '-L/Users/travis/miniconda3/conda-bld/r-base_1538210616116/_build_env/lib/gcc/x86_64-apple-darwin11.4.2/4.8.5'ld: warning: directory not found for option '-L/Users/travis/miniconda3/conda-bld/r-base_1538210616116/_build_env/lib/gcc'ld: warning: directory not found for option '-L/Users/travis/miniconda3/conda-bld/r-base_1538210616116/_build_env/lib'ld: warning: ld: warning: object file (coxph.o) was built for newer OSX version (10.12) than being linked (10.9)object file (discrete.o) was built for newer OSX version (10.12) than being linked (10.9) ld: warning: object file (gdi.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (mat.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (init.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (magic.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (matrix.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (mvn.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (mgcv.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (misc.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (qp.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning: object file (soap.o) was built for newer OSX version (10.12) than being linked (10.9)ld: warning:?ld: warning: object file (sparse-smooth.o) was built for newer OSX version (10.12) than being linked (10.9)object file (tprs.o) was built for newer OSX version (10.12) than being linked (10.9) installing to /anaconda3/lib/R/library/mgcv/libs** R** data** inst** byte-compile and prepare package for lazy loadingError: package or namespace load failed for ?nlme? in dyn.load(file, DLLpath = DLLpath, ...):?unable to load shared object '/anaconda3/lib/R/library/nlme/libs/nlme.so':? dlopen(/anaconda3/lib/R/library/nlme/libs/nlme.so, 6): Symbol not found: _libintl_dgettext? Referenced from: /anaconda3/lib/R/library/nlme/libs/nlme.so? Expected in: /anaconda3/lib/R/lib/libR.dylib?in /anaconda3/lib/R/library/nlme/libs/nlme.soError : package ?nlme? could not be loadedERROR: lazy loading failed for package ?mgcv?* removing ?/anaconda3/lib/R/library/mgcv?Warning in install.packages :? installation of package ?mgcv? had non-zero exit statusERROR: dependency ?SparseM? is not available for package ?quantreg?* removing ?/anaconda3/lib/R/library/quantreg?Warning in install.packages :? installation of package ?quantreg? had non-zero exit statusERROR: dependency ?minqa? is not available for package ?lme4?* removing ?/anaconda3/lib/R/library/lme4?Warning in install.packages :? installation of package ?lme4? had non-zero exit statusERROR: dependency ?lme4? is not available for package ?pbkrtest?* removing ?/anaconda3/lib/R/library/pbkrtest?Warning in install.packages :? installation of package ?pbkrtest? had non-zero exit statusERROR: dependencies ?mgcv?, ?pbkrtest?, ?quantreg?, ?lme4? are not available for package ?car?* removing ?/anaconda3/lib/R/library/car?Warning in install.packages :? installation of package ?car? had non-zero exit status The downloaded source packages are in ?/private/var/folders/r9/r2jscqms20nczq8175jn2j2h0000gn/T/RtmpWHGvHe/downloaded_packages?Updating HTML index of packages in '.Library'Making 'packages.html' ... done -------------- next part -------------- An HTML attachment was scrubbed... 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