[Caic-commits] r91 - pkg/man

[noreply at r-forge.r-project.org]

Author: davidorme
Date: 2009-04-22 15:01:36 +0200 (Wed, 22 Apr 2009)
New Revision: 91

Modified:
   pkg/man/phylo.d.Rd
Log:
Reduced permutations on phylo.d to reduce computation time in builds

Modified: pkg/man/phylo.d.Rd
===================================================================
--- pkg/man/phylo.d.Rd	2009-04-22 12:58:45 UTC (rev 90)
+++ pkg/man/phylo.d.Rd	2009-04-22 13:01:36 UTC (rev 91)
@@ -64,9 +64,9 @@
 tiplabels(tip=tipOrd, pch=21, bg=ifelse(shorebird.data$clustered==0, 'white','black'))
 
 # an example where D is not significantly different from a brownian threshold model of evolution (0)
-ex1 <- phylo.d(shorebird.data, shorebird.tree, threat, Species)
+ex1 <- phylo.d(shorebird.data, shorebird.tree, threat, Species, permut=100)
 # an example where D is not significantly different from random (1)
-ex2 <- phylo.d(shorebird.data, shorebird.tree, clustered, Species)
+ex2 <- phylo.d(shorebird.data, shorebird.tree, clustered, Species, permut=100)
 }
 
 % Add one or more standard keywords, see file 'KEYWORDS' in the