[Caic-commits] r77 - pkg/inst/doc

[noreply at r-forge.r-project.org]

Author: petzoldt
Date: 2008-10-04 13:29:26 +0200 (Sat, 04 Oct 2008)
New Revision: 77

Modified:
   pkg/inst/doc/caic-benchmarks.pdf
   pkg/inst/doc/caic-benchmarks.rnw
   pkg/inst/doc/caic.pdf
Log:
homepage fix and .rda .Rda change only; all other reverted to svn rev 73

Modified: pkg/inst/doc/caic-benchmarks.pdf
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Modified: pkg/inst/doc/caic-benchmarks.rnw
===================================================================
--- pkg/inst/doc/caic-benchmarks.rnw	2008-10-04 11:13:01 UTC (rev 76)
+++ pkg/inst/doc/caic-benchmarks.rnw	2008-10-04 11:29:26 UTC (rev 77)
@@ -73,8 +73,7 @@
 The next section of code duplicates these CAIC analyses using the \texttt{crunch()} function. Note that the default internal branch length used in calculations at a polytomy (\texttt{polytomy.brlen}) needs to be changed from the 0, which is the default in \texttt{crunch()}, to 1, which was the default in CAIC. The \texttt{caic.table()} function is used to extract a contrast table from the \texttt{crunch()} output, including CAIC style node labels.
 
 <<>>=
-#load("../../benchmarks/Benchmark.rda")
-load("Benchmark.Rda")
+load("../../benchmarks/Benchmark.Rda")
 library(CAIC)
 crunch.CrDi213 <- crunch(contResp ~ contExp1 + contExp2, data=BenchData, phy=BENCH, names.col=node, polytomy.brlen=1)
 crunch.CrDi213.tab <- caic.table(crunch.CrDi213, CAIC.codes=TRUE)

Modified: pkg/inst/doc/caic.pdf
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