[Biomod-commits] Ensemble Modelling error

[Jesus]

Dear Damien,

I continuously get the following error message when computing the Ensemble
models:

"Error in `[.data.frame`(prediction.kept, , models.kept) :
  undefined columns selected"

The code I use is:
 myBiomodEM <- BIOMOD_EnsembleModeling(
+ modeling.output = myBiomodModelOut,
+ chosen.models = "all",
+   em.by='all',
+ eval.metric = c('TSS'),
+ eval.metric.quality.threshold = NULL,
+ prob.mean = T,
+ prob.cv = T,
+ prob.ci = T,
+ prob.ci.alpha = 0.05,
+ prob.median = T,
+ committee.averaging = T,
+ prob.mean.weight = T,
+ prob.mean.weight.decay = 'proportional')
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Build Ensemble Models
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=

   ! all models available will be included in ensemble.modeling
   ! No eval.metric.quality.threshold -> All models will be kept for
Ensemble Modeling

  > TotalConsensus ensemble modeling
   > TSS
   > models kept :  P.ayacahuite_pa.data.tmp$pa.tab_RUN1_GAM,
P.ayacahuite_pa.data.tmp$pa.tab_RUN1_RF,
P.ayacahuite_pa.data.tmp$pa.tab_RUN1_GLM,
P.ayacahuite_pa.data.tmp$pa.tab_RUN1_GBM,
P.ayacahuite_pa.data.tmp$pa.tab_RUN2_GAM,
P.ayacahuite_pa.data.tmp$pa.tab_RUN2_RF,
P.ayacahuite_pa.data.tmp$pa.tab_RUN2_GLM,
P.ayacahuite_pa.data.tmp$pa.tab_RUN2_GBM,
P.ayacahuite_pa.data.tmp$pa.tab_Full_GAM,
P.ayacahuite_pa.data.tmp$pa.tab_Full_RF,
P.ayacahuite_pa.data.tmp$pa.tab_Full_GLM,
P.ayacahuite_pa.data.tmp$pa.tab_Full_GBM
   ! Models projections for whole zonation required...
> Projecting P.ayacahuite_pa.data.tmp$pa.tab_RUN1_GAM ...
> Projecting P.ayacahuite_pa.data.tmp$pa.tab_RUN1_RF ...
> Projecting P.ayacahuite_pa.data.tmp$pa.tab_RUN1_GLM ...
> Projecting P.ayacahuite_pa.data.tmp$pa.tab_RUN1_GBM ...
> Projecting P.ayacahuite_pa.data.tmp$pa.tab_RUN2_GAM ...
> Projecting P.ayacahuite_pa.data.tmp$pa.tab_RUN2_RF ...
> Projecting P.ayacahuite_pa.data.tmp$pa.tab_RUN2_GLM ...
> Projecting P.ayacahuite_pa.data.tmp$pa.tab_RUN2_GBM ...
> Projecting P.ayacahuite_pa.data.tmp$pa.tab_Full_GAM ...
> Projecting P.ayacahuite_pa.data.tmp$pa.tab_Full_RF ...
> Projecting P.ayacahuite_pa.data.tmp$pa.tab_Full_GLM ...
> Projecting P.ayacahuite_pa.data.tmp$pa.tab_Full_GBM ...
Error in `[.data.frame`(prediction.kept, , models.kept) :
  undefined columns selected


***I have been trying to figure out exactly what is going on but have not
been successful. The single models seem to be OK.

Could you please give me an insight about it?

Cheers,

Jesus