[Biomod-commits] response.plot function in Biomod2
Pablo Riul
pabloriul at yahoo.com.br
Fri Sep 7 17:57:31 CEST 2012
Damien,
Sorry, my mistake. I intended to say using getModelsVarImport() to an object created by the BIOMOD_EnsembleModeling(). I want to get the variables importance table for the consensus model. A lot of codes confused me, sorry gain.
Cheers,
Pablo Riul
Departamento de Engenharia e Meio Ambiente
Centro de Ciências Aplicadas e Educação
Universidade Federal da Paraíba - Campus IV
R: Mangueira s/n, Centro CEP: 58.297-000
Rio Tinto - Paraíba - Brasil
________________________________
De: Damien Georges <damien.georges2 at gmail.com>
Para: Pablo Riul <pabloriul at yahoo.com.br>
Cc: Wilfried Thuiller <wilfried.thuiller at ujf-grenoble.fr>; "biomod-commits at lists.r-forge.r-project.org" <biomod-commits at r-forge.wu-wien.ac.at>
Enviadas: Sexta-feira, 7 de Setembro de 2012 12:46
Assunto: Re: [Biomod-commits] response.plot function in Biomod2
Yes, you can do it but you have to use getEMeval() rather than getModelsEvaluations() for BIOMOD_EnsembleModeling() outputs..
Help files will also be add in the next package update.
Hope that helps,
Damien
On 07/09/2012 17:25, Pablo Riul wrote:
Wilfried and Damien,
>
>
>Thanks for you attention, I will wait the update. I have another question, I tried to get the var importances of a consensus model using something like getModelsEvaluations() to an object created by the BIOMOD_EnsembleModeling() function but it was not possible. Is there any way to get these information?
>
>
>Bests,
>
>Pablo Riul
>
>Departamento de Engenharia e Meio Ambiente
>Centro de Ciências Aplicadas e Educação
>Universidade Federal da Paraíba - Campus IV
>R: Mangueira s/n, Centro CEP: 58.297-000
>Rio Tinto - Paraíba - Brasil
>
>
>
>________________________________
> De: Wilfried Thuiller <wilfried.thuiller at ujf-grenoble.fr>
>Para: Pablo Riul <pabloriul at yahoo.com.br>
>Cc: Damien Georges <damien.georges2 at gmail.com>; "biomod-commits at lists.r-forge.r-project.org" <biomod-commits at r-forge.wu-wien.ac.at>
>Enviadas: Sexta-feira, 7 de Setembro de 2012 12:02
>Assunto: Re: [Biomod-commits] response.plot function in Biomod2
>
>
>We have a small problem on R-Forge at the moment so it will not be available before next week.
>
>
>To answer your question, yes, if you update biomod2 next week, the function response.plot will be updated.
>
>
>At the moment, it was impossible to give a raster stack to response.plot. We just discussed with Damien, and we will implement that quickly. This is rather easy to do. It will be included in the new version next week.
>
>
>Damien will send a short email notifying this update.
>
>
>Hope it helps,
>Wilfried
>
>
>
>
>Le 7 sept. 2012 à 16:55, Pablo Riul a écrit :
>
>Dear Damien,
>>
>>
>>Sorry but I am not sure I understood. You updated and it will be availiable if I update my biomod2 package is that what you meant?
>>
>>
>>Cheers,
>>
>>Pablo Riul
>>
>>Departamento de Engenharia e Meio Ambiente
>>Centro de Ciências Aplicadas e Educação
>>Universidade Federal da Paraíba - Campus IV
>>R: Mangueira s/n, Centro CEP: 58.297-000
>>Rio Tinto - Paraíba - Brasil
>>
>>
>>
>>________________________________
>> De: Damien Georges <damien.georges2 at gmail.com>
>>Para: biomod-commits at lists.r-forge.r-project.org; pabloriul at yahoo.com.br
>>Enviadas: Sexta-feira, 7 de Setembro de 2012 9:38
>>Assunto: Re: [Biomod-commits] response.plot function in Biomod2
>>
>>
>>Dear Pablo,
>>
>>I realized that this function help
file example was out of date.. I
updated it !
>>
>>Cheers,
>>
>>Damien
>>
>>On 07/09/2012 14:02, Wilfried Thuiller
wrote:
>>
>>Dear Pablo,
>>>
>>>
>>>You have the documentation in the help file:
>>>
>>>
>>>?response.plot
>>>
>>>
>>>Wilfried
>>>
>>>
>>>
>>>
>>>
>>>Le 7 sept. 2012 à 13:08, Pablo Riul a écrit :
>>>
>>>Dear list,
>>>>
>>>>
>>>>Does anybody know how to use the response.plot function in Biomod2?
>>>>
>>>>
>>>>
>>>>Cheers,
>>>>
>>>>Pablo Riul
>>>>
>>>>Departamento de Engenharia e
Meio Ambiente
>>>>Centro de Ciências Aplicadas
e Educação
>>>>Universidade Federal da
Paraíba - Campus IV
>>>>R: Mangueira s/n, Centro
CEP: 58.297-000
>>>>Rio Tinto - Paraíba - Brasil
_______________________________________________
>>>>Biomod-commits mailing list
>>>>Biomod-commits at lists.r-forge.r-project.org
>>>>https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits
>>>
>>>--------------------------
>>>Dr. Wilfried Thuiller
>>>Laboratoire d'Ecologie Alpine, UMR CNRS 5553
>>>Université Joseph Fourier
>>>BP53, 38041 Grenoble cedex 9, France
>>>tel: +33 (0)4 76 51 44 97
>>>fax: +33 (0)4 76 51 42 79
>>>
>>>
>>>Email: wilfried.thuiller at ujf-grenoble.fr
>>>Personal
website: http://www.will.chez-alice.fr
>>>Team website: http://www-leca.ujf-grenoble.fr/equipes/emabio.htm
>>>
>>>ERC Starting
Grant TEEMBIO
project: http://www.will.chez-alice.fr/Research.html
>>>FP6 European
EcoChange
project: http://www.ecochange-project.eu
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>_______________________________________________
Biomod-commits mailing list Biomod-commits at lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits
>>
>>
>>
_______________________________________________
>>Biomod-commits mailing list
>>Biomod-commits at lists.r-forge.r-project.org
>>https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits
>
>--------------------------
>Dr. Wilfried Thuiller
>Laboratoire d'Ecologie Alpine, UMR CNRS 5553
>Université Joseph Fourier
>BP53, 38041 Grenoble cedex 9, France
>tel: +33 (0)4 76 51 44 97
>fax: +33 (0)4 76 51 42 79
>
>
>Email: wilfried.thuiller at ujf-grenoble.fr
>Personal website: http://www.will.chez-alice.fr
>Team website: http://www-leca.ujf-grenoble.fr/equipes/emabio.htm
>
>ERC Starting Grant TEEMBIO
project: http://www.will.chez-alice.fr/Research.html
>FP6 European EcoChange
project: http://www.ecochange-project.eu
>
>
>
>
>
>
>
>
>
>
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