[Biomod-commits] consensus AUC

Ashley Brooks ashleycbrooks84 at gmail.com
Tue Apr 3 21:49:46 CEST 2012

Hi all!

I would like to report the overall AUC value for my ensemble prediction and
my question is: where is the consensus AUC output or do I need to calculate
this myself?  If I need to calculate manually does the fact that my decay
was set to proportional?  Here are my commands thus far:

> Models(GLM=T, TypeGLM="poly", Test="AIC", GBM=T, No.trees=2000, GAM=T,
Spline=3, CTA=T, CV.tree=50, ANN=T, CV.ann=2, SRE=T,quant=0.05, FDA=T,
MARS=T, RF=T, NbRunEval=3, DataSplit=70, Yweights=NULL, Roc=T,
Optimized.Threshold.Roc=T, Kappa=T, TSS=T, KeepPredIndependent=T,
VarImport=5, NbRepPA=2, strategy="circles", coor=Coor, distance=2,

> Projection(Proj=cccm80a2a[,3:12], Proj.name='cccm80a2a', GLM=T, GBM=T,
GAM=T, CTA=T, ANN=T, SRE=T, quant=0.05, FDA=T, MARS=T, RF=T, BinRoc=T,
BinKappa=F, BinTSS=F, FiltRoc=T, FiltKappa=F, FiltTSS=F,

> Ensemble.Forecasting(Proj.name="cccm80a2a", weight.method='Roc',
PCA.media=F, binary=T, bin.method='Roc', Test=T, decay="proportional",
repetition.models=T, final.model.out=TRUE)

Thanks for your help!
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