[Biomod-commits] "xzfile" error with models function

Sarah Skikne skikne at gmail.com
Sat Jan 22 03:34:50 CET 2011


Dear BIOMODers,

I am having some trouble with the models() function in BIOMOD and was hoping
to get some help.

Here is the relevant info:
- R version 2.12.1
- I re-downloaded the BIOMOD package a few days ago so it should be up to
date.
- code:

TrialDF<-data.frame(XCoord=x, YCoord=y, RAIN1=RAIN1scan, RAIN2=RAIN2scan,
RAIN3=RAIN3scan, RAIN4=RAIN4scan, RAIN5=RAIN5scan, RAIN6=RAIN6scan,
RAIN7=RAIN7scan, RAIN8=RAIN8scan, RAIN9=RAIN9scan, RAIN10=RAIN10scan,
RAIN11=RAIN11scan, RAIN12=RAIN12scan, TMAX1=TMAX1scan, TMAX2=TMAX2scan,
TMAX3=TMAX3scan, TMAX4=TMAX4scan, TMAX5=TMAX5scan, TMAX6=TMAX6scan,
TMAX7=TMAX7scan, TMAX8=TMAX8scan, TMAX9=TMAX9scan, TMAX10=TMAX10scan,
TMAX11=TMAX11scan, TMAX12=TMAX12scan, TMEAN1=TMEAN1scan, TMEAN2=TMEAN2scan,
TMEAN3=TMEAN3scan, TMEAN4=TMEAN4scan, TMEAN5=TMEAN5scan, TMEAN6=TMEAN6scan,
TMEAN7=TMEAN7scan, TMEAN8=TMEAN8scan, TMEAN9=TMEAN9scan,
TMEAN10=TMEAN10scan, TMEAN11=TMEAN11scan, TMEAN12=TMEAN12scan,
TMIN1=TMIN1scan, TMIN2=TMIN2scan, TMIN3=TMIN3scan, TMIN4=TMIN4scan,
TMIN5=TMIN5scan, TMIN6=TMIN6scan, TMIN7=TMIN7scan, TMIN8=TMIN8scan,
TMIN9=TMIN9scan, TMIN10=TMIN10scan, TMIN11=TMIN11scan, TMIN12=TMIN12scan,
LOCALITY=localityscan)

Initial.State(Response=TrialDF[,51], Explanatory=TrialDF[,3:50],
IndependentResponse=NULL, IndependentExplanatory=NULL, sp.name='spp1')


Models(GLM=T, TypeGLM="poly", Test="AIC", GBM=T, No.trees=2000, GAM=T,
CTA=T, CV.tree=50, ANN=T, CV.ann=3, SRE=T, MARS=T, RF=T, NbRunEval=3,
DataSplit=80, NbRepPA=2, strategy="circles", coor=TrialDF[,1:2],
distance=.5, nb.absences=220, Yweights=NULL, VarImport=T, Roc=T,
Optimized.Threshold.Roc=T, Kappa=T, TSS=T, KeepPredIndependent=T)



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