From ggraca at itqb.unl.pt Fri Jun 12 15:56:33 2015 From: ggraca at itqb.unl.pt (=?UTF-8?Q?Gon=C3=A7alo_Gra=C3=A7a?=) Date: Fri, 12 Jun 2015 14:56:33 +0100 Subject: [Batman-users] RelCon confidence intervals Message-ID: <85f5173ab7175425e5b3e3782ee745ff@itqb.unl.pt> Hello, I would like just to know if the values used to calculate the mean relative concentration stored in RelCon.txt are stored in any other file. I presume these values are stored in betaSam files, is this correct? Anyway, I find that the mean of betaSam for a metabolite does not match the same metabolite RelCon. Could someone clarify this? Thank you, -- Gon?alo Gra?a, PhD. Cell Physiology & NMR Lab Instituto de Tecnologia Qu?mica e Biol?gica Ant?nio Xavier Universidade Nova de Lisboa Av da Republica (EAN), 2780-157 Oeiras, Portugal Tel:+351 214469561 From j.hao at hotmail.co.uk Mon Jun 15 11:10:35 2015 From: j.hao at hotmail.co.uk (Jie Hao) Date: Mon, 15 Jun 2015 10:10:35 +0100 Subject: [Batman-users] RelCon confidence intervals In-Reply-To: <85f5173ab7175425e5b3e3782ee745ff@itqb.unl.pt> References: <85f5173ab7175425e5b3e3782ee745ff@itqb.unl.pt> Message-ID: Hi Gon?alo,The RelCon.txt is the estimated posterior mean of relative concentrations, but what you see in bataSam is not every entry of the sample.You should find the parameter "Save results in every ? iterations:" setting in your input batmanOptions.txt file (example below), where this case it is set to record value at every 50 iterations. "Save results in every ? iterations: 50"As normally we run lots of iterations, recording every sample (not only for beta, but also delta and so on) may results in a very large output data and may take a while to write and read in, , but if you want to check, maybe set this parameter to 1?BestJie > Date: Fri, 12 Jun 2015 14:56:33 +0100 > From: ggraca at itqb.unl.pt > To: batman-users at lists.r-forge.r-project.org > Subject: [Batman-users] RelCon confidence intervals > > Hello, > > I would like just to know if the values used to calculate the mean > relative concentration stored in RelCon.txt are stored in any other > file. I presume these values are stored in betaSam files, is this > correct? > Anyway, I find that the mean of betaSam for a metabolite does not match > the same metabolite RelCon. > Could someone clarify this? > > Thank you, > > > -- > Gon?alo Gra?a, PhD. > Cell Physiology & NMR Lab > Instituto de Tecnologia Qu?mica e Biol?gica Ant?nio Xavier > Universidade Nova de Lisboa > Av da Republica (EAN), 2780-157 Oeiras, Portugal > Tel:+351 214469561 > _______________________________________________ > Batman-users mailing list > Batman-users at lists.r-forge.r-project.org > http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/batman-users -------------- next part -------------- An HTML attachment was scrubbed... URL: