[Basta-users] Error with simulation to find jump sd's

[Fernando Colchero]

Hi Achaz,

  I found the problem, in record 19 you had a 2 instead of a 1 on the recapture column for year 2013. This was making BaSTA to assign awfully high times of death… This is the first time we have this bug, we’ll make sure to include a check for this kind of problems in the DataCheck() function. Thanks for reporting this!

Best,

Fernando

Fernando Colchero
Assistant Professor
Department of Mathematics and Computer Science
Max-Planck Odense Center on the Biodemography of Aging

Tlf.               +45 65 50 23 24
Email           colchero at imada.sdu.dk <mailto:colchero at imada.sdu.dk>
Web             www.sdu.dk/staff/colchero <http://www.sdu.dk/staff/colchero>
Pers. web   www.colchero.com <http://www.sdu.dk/staff/colchero>
Adr.              Campusvej 55, 5230, Odense, Dk

University of Southern Denmark

> On 13 Jun 2015, at 22:55, Fernando Colchero <colchero at imada.sdu.dk> wrote:
> 
> Great, I’ll check it up and get back to you.
> 
> Best,
> 
> Fernando
> 
> Fernando Colchero
> Assistant Professor
> Department of Mathematics and Computer Science
> Max-Planck Odense Center on the Biodemography of Aging
> 
> Tlf.               +45 65 50 23 24
> Email           colchero at imada.sdu.dk <mailto:colchero at imada.sdu.dk>
> Web             www.sdu.dk/staff/colchero <http://www.sdu.dk/staff/colchero>
> Pers. web   www.colchero.com <http://www.sdu.dk/staff/colchero>
> Adr.              Campusvej 55, 5230, Odense, Dk
> 
> University of Southern Denmark
> 
>> On 13 Jun 2015, at 22:47, Achaz von Hardenberg <achaz.hardenberg at pngp.it <mailto:achaz.hardenberg at pngp.it>> wrote:
>> 
>> Fernando,
>> sorry... forgot the attached file!
>> Here it goes!
>> 
>> cheers,
>> Achaz
>> 
>> 
>> 
>> On Sat, Jun 13, 2015 at 10:12 PM, Fernando Colchero <colchero at imada.sdu.dk <mailto:colchero at imada.sdu.dk>> wrote:
>> Dear Achaz,
>> 
>>   First of all, sorry for the late reply. I suspect that you might have NA’s in your data, maybe with your covariates. Could this be the case?
>> 
>> Best,
>> 
>> Fernando
>> 
>> Fernando Colchero
>> Assistant Professor
>> Department of Mathematics and Computer Science
>> Max-Planck Odense Center on the Biodemography of Aging
>> 
>> Tlf.               +45 65 50 23 24 <tel:%2B45%2065%2050%2023%2024>
>> Email           colchero at imada.sdu.dk <mailto:colchero at imada.sdu.dk>
>> Web             www.sdu.dk/staff/colchero <http://www.sdu.dk/staff/colchero>
>> Pers. web   www.colchero.com <http://www.sdu.dk/staff/colchero>
>> Adr.              Campusvej 55, 5230, Odense, Dk
>> 
>> University of Southern Denmark
>> 
>>> On 09 Jun 2015, at 16:10, Achaz von Hardenberg <achaz.hardenberg at pngp.it <mailto:achaz.hardenberg at pngp.it>> wrote:
>>> 
>>> Hi,
>>> 
>>> I am trying the simplest possible analysis with BaSTA with my own data using the following comand:
>>> 
>>> out<-basta(object=marmot.dat,studyStart=2007,studyEnd=2014)
>>> 
>>> but it gives me the following error message:
>>> 
>>> No problems were detected with the data.
>>> 
>>> Starting simulation to find jump sd's... 
>>> Error in if (acceptCrit > acceptProb) { : 
>>>   missing value where TRUE/FALSE needed
>>> 
>>> DataCheck tells me that the data is fine. 
>>> Anyone knows how to fix this?
>>> 
>>> Thanks a lot,
>>> 
>>> Achaz von Hardenberg 
>>> Alpine Wildlife Research Centre
>>> Gran Paradiso National Park
>>> 
>>> _______________________________________________
>>> Basta-users mailing list
>>> Basta-users at lists.r-forge.r-project.org <mailto:Basta-users at lists.r-forge.r-project.org>
>>> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users <https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users>
>> 
>> 
>> <marmot.csv>

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.r-forge.r-project.org/pipermail/basta-users/attachments/20150617/1bdc4b97/attachment-0001.html>