[Archetypes-commits] r16 - in pkg: . R inst/doc man

[noreply at r-forge.r-project.org]

Author: manuel
Date: 2009-04-20 17:30:08 +0200 (Mon, 20 Apr 2009)
New Revision: 16

Modified:
   pkg/DESCRIPTION
   pkg/R/archetypes-movie.R
   pkg/R/archetypes-step.R
   pkg/R/skeletonplot.R
   pkg/inst/doc/archetypes.Rnw
   pkg/man/pcplot-methods.Rd
Log:


Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2009-04-15 06:54:25 UTC (rev 15)
+++ pkg/DESCRIPTION	2009-04-20 15:30:08 UTC (rev 16)
@@ -1,8 +1,8 @@
 Package: archetypes
 Type: Package
 Title: Archetypal Analysis
-Version: 0.1-1
-Date: 2009-04-15
+Version: 1.0
+Date: 2009-04-20
 Depends: nnls (>= 1.1)
 Suggests: MASS, vcd
 Author: Manuel J. A. Eugster <manuel.eugster at stat.uni-muenchen.de>
@@ -15,4 +15,4 @@
   "good" help pages for the everyday use of a package; we refer to the
   vignette for a consistent package illustration.
 License: GPL (>= 2)
-Revision: 15
+Revision: 16

Modified: pkg/R/archetypes-movie.R
===================================================================
--- pkg/R/archetypes-movie.R	2009-04-15 06:54:25 UTC (rev 15)
+++ pkg/R/archetypes-movie.R	2009-04-20 15:30:08 UTC (rev 16)
@@ -13,6 +13,7 @@
 #' @usage
 #' movieplot(zs, data, show=c('atypes', 'adata'),
 #'           ssleep=0, bsleep=0, postfn=function(iter){}, ...)
+#' @aliases movieplot
 #' @export
 movieplot <- function(zs, data, show=c('atypes', 'adata'),
                       ssleep=0, bsleep=0, postfn=function(iter){}, ...) {

Modified: pkg/R/archetypes-step.R
===================================================================
--- pkg/R/archetypes-step.R	2009-04-15 06:54:25 UTC (rev 15)
+++ pkg/R/archetypes-step.R	2009-04-20 15:30:08 UTC (rev 16)
@@ -157,7 +157,7 @@
 #' Best model getter.
 #' @param zs An \code{\link{stepArchetypes}} object.
 #' @param ... Further arguments.
-#' @return A list of length $k$ of best models.
+#' @return A list of length \code{k} of best models.
 #' @export
 bestModel <- function(zs, ...) {
   UseMethod('bestModel')
@@ -166,7 +166,7 @@
 #' \code{stepArchetypes} best model getter.
 #' @param zs A \code{stepArchetypes} object.
 #' @param ... Ignored.
-#' @return A list of length $k$ of best models.
+#' @return A list of length \code{k} of best models.
 #' @method bestModel stepArchetypes
 #' @S3method bestModel stepArchetypes
 bestModel.stepArchetypes <- function(zs, ...) {

Modified: pkg/R/skeletonplot.R
===================================================================
--- pkg/R/skeletonplot.R	2009-04-15 06:54:25 UTC (rev 15)
+++ pkg/R/skeletonplot.R	2009-04-20 15:30:08 UTC (rev 16)
@@ -26,6 +26,7 @@
 #'    shoulder = 1, head = 1, elbow=2, wrist=3, knee=4, ankle=5,
 #'    chest='purple1', pelvis=6), mtext=TRUE, skel.lwd=1, ...)
 #' @seealso \code{\link{skel}}, \code{\link{jd}}
+#' @aliases skeletonplot
 skeletonplot <- function(x, skel.width=100, skel.height=200,
                          base.radius=2, xlab='', ylab='Height (cm)',
                          xlim=(nrow(x)*c(0,skel.width)), ylim=c(0,skel.height),

Modified: pkg/inst/doc/archetypes.Rnw
===================================================================
--- pkg/inst/doc/archetypes.Rnw	2009-04-15 06:54:25 UTC (rev 15)
+++ pkg/inst/doc/archetypes.Rnw	2009-04-20 15:30:08 UTC (rev 16)
@@ -938,9 +938,9 @@
 
 \section*{Computational details}
 
-All computations and graphics in this paper have been done using
-\proglang{R} version 2.7.1 with the packages \pkg{archetypes} 0.1,
-\pkg{MASS} 7.2-43, \pkg{nnls} 1.1 and \pkg{tools} 2.7.1.
+<<print=TRUE,echo=TRUE>>=
+sessionInfo()
+@ 
 
 The newest released version of \pkg{archetypes} is always available
 from the Comprehensive R Archive Network at

Modified: pkg/man/pcplot-methods.Rd
===================================================================
--- pkg/man/pcplot-methods.Rd	2009-04-15 06:54:25 UTC (rev 15)
+++ pkg/man/pcplot-methods.Rd	2009-04-20 15:30:08 UTC (rev 16)
@@ -17,7 +17,7 @@
   \item{col}{Line color.}
   \item{lty}{Line type.}
   \item{var.label}{Axes labels.}
-  \item{rx}{A $2 \times m$ matrix with ranges for each dimension.}
+  \item{rx}{A \eqn{2 \times m} matrix with ranges for each dimension.}
   \item{data}{A matrix or data frame.}
   \item{data.col}{Color of data lines.}
   \item{data.lwd}{Width of data lines.}