[Adephylo-commits] r195 - in pkg: . man

[noreply at r-forge.r-project.org]

Author: jombart
Date: 2013-08-09 16:47:49 +0200 (Fri, 09 Aug 2013)
New Revision: 195

Modified:
   pkg/NAMESPACE
   pkg/man/mjrochet.Rd
   pkg/man/ppca.Rd
Log:
Still some examples failing.

Modified: pkg/NAMESPACE
===================================================================
--- pkg/NAMESPACE	2013-08-09 14:35:59 UTC (rev 194)
+++ pkg/NAMESPACE	2013-08-09 14:47:49 UTC (rev 195)
@@ -13,7 +13,8 @@
            "plot.phylo", "root", "nj", "bionj", "read.tree", ".PlotPhyloEnv")
 
 importFrom(ade4, "as.krandtest", "as.dudi", "as.randtest", "orthobasis.mat", "dudi.acm", "redo.dudi",
-           "plot.randtest", "s.arrow", "s.label", "scatter", "scalewt", "dudi.pca")
+           "plot.randtest", "s.arrow", "s.label", "scatter", "scalewt", "dudi.pca", "plot.krandtest",
+           "add.scatter", "add.scatter.eig")
 
 importFrom(adegenet, "bluepal", "redpal", "greenpal", "seasun", "spectral", "funky",
            "num2col", "fac2col", "any2col", "transp")

Modified: pkg/man/mjrochet.Rd
===================================================================
--- pkg/man/mjrochet.Rd	2013-08-09 14:35:59 UTC (rev 194)
+++ pkg/man/mjrochet.Rd	2013-08-09 14:47:49 UTC (rev 195)
@@ -59,7 +59,7 @@
 ## perform Abouheif's test for each trait
 mjr.tests <- abouheif.moran(mjr, nrep=499)
 mjr.tests
-plot(mjr.tests)
+
 }
 }
 \keyword{datasets}

Modified: pkg/man/ppca.Rd
===================================================================
--- pkg/man/ppca.Rd	2013-08-09 14:35:59 UTC (rev 194)
+++ pkg/man/ppca.Rd	2013-08-09 14:47:49 UTC (rev 195)
@@ -130,10 +130,11 @@
  }
 \author{ Thibaut Jombart \email{tjombart at imperial.ac.uk} }
 \examples{
-if(require(ape) && require(phylobase)){
+data(lizards)
 
+if(require(ape) && require(phylobase) && require(ade4)){
+
 #### ORIGINAL EXAMPLE FROM JOMBART ET AL 2010 ####
-data(lizards)
 
 
 ## BUILD A TREE AND A PHYLO4D OBJECT