[Adephylo-commits] r170 - in pkg: . inst inst/doc inst/doc/figs man

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Mon Jan 17 18:16:20 CET 2011 

Author: jombart
Date: 2011-01-17 18:16:20 +0100 (Mon, 17 Jan 2011)
New Revision: 170

Modified:
   pkg/DESCRIPTION
   pkg/inst/CITATION
   pkg/inst/doc/adephylo.pdf
   pkg/inst/doc/figs/adephylo-012.pdf
   pkg/inst/doc/figs/adephylo-016.pdf
   pkg/inst/doc/figs/adephylo-018.pdf
   pkg/inst/doc/figs/adephylo-aboutest.pdf
   pkg/inst/doc/figs/adephylo-figFourBas.pdf
   pkg/inst/doc/figs/adephylo-lm1.pdf
   pkg/inst/doc/figs/adephylo-loadings.pdf
   pkg/inst/doc/figs/adephylo-orthobas1.pdf
   pkg/inst/doc/figs/adephylo-pca1.pdf
   pkg/inst/doc/figs/adephylo-pca2.pdf
   pkg/inst/doc/figs/adephylo-phylo4d.pdf
   pkg/inst/doc/figs/adephylo-resid.pdf
   pkg/man/adephylo.package.Rd
Log:
New version fixing an issue with citation.


Modified: pkg/DESCRIPTION
===================================================================
--- pkg/DESCRIPTION	2010-11-17 12:29:53 UTC (rev 169)
+++ pkg/DESCRIPTION	2011-01-17 17:16:20 UTC (rev 170)
@@ -1,6 +1,6 @@
 Package: adephylo
-Version: 1.1-0
-Date: 2010/04/05
+Version: 1.1-1
+Date: 2011/01/017
 Title: adephylo: exploratory analyses for the phylogenetic comparative method.
 Author: Thibaut Jombart <t.jombart at imperial.ac.uk>, Stephane Dray <dray at biomserv.univ-lyon1.fr>
 Maintainer: Thibaut Jombart <t.jombart at imperial.ac.uk>
@@ -9,4 +9,4 @@
 Description: Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa.
 License: GPL (>=2)
 LazyLoad: yes
-Collate: utils.R partition.R table.phylo4d.R distances.R proximities.R orthobasis.R ppca.R orthogram.R abouheif.R moran.R zzz.R
\ No newline at end of file
+Collate: utils.R partition.R table.phylo4d.R distances.R proximities.R orthobasis.R ppca.R orthogram.R abouheif.R moran.R zzz.R

Modified: pkg/inst/CITATION
===================================================================
--- pkg/inst/CITATION	2010-11-17 12:29:53 UTC (rev 169)
+++ pkg/inst/CITATION	2011-01-17 17:16:20 UTC (rev 170)
@@ -3,11 +3,11 @@
 citEntry(
 entry="Article",
 title = "adephylo: exploratory analyses for the phylogenetic comparative method.",
-journal= "",
-year = "2008",
+journal= "Bioinformatics",
+year = "2010",
 author = "T. Jombart, S. Dray",
-volume = "",
-pages = "",
-doi = "",
+volume = "26",
+pages = "1907-1909",
+doi = "10.1093/bioinformatics/btq292",
 textVersion = "Jombart T., Dray S. (2008) adephylo: exploratory analyses for the phylogenetic comparative method."
 )

Modified: pkg/inst/doc/adephylo.pdf
===================================================================
--- pkg/inst/doc/adephylo.pdf	2010-11-17 12:29:53 UTC (rev 169)
+++ pkg/inst/doc/adephylo.pdf	2011-01-17 17:16:20 UTC (rev 170)
@@ -1,294 +1,287 @@
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-C ‘߈»ý+6	Z(§Äñ+Lâ…’:=ø–cëýY4—J¡ñš«h~Ə̿+/Á½lƆ#XÑÏë·—³Ó¡åßóÞÜÜÞ¤pù%Ȫ«+!džf™>¿Èóžp¤5à€È‘BP\;ø*fÚ ‰>¥rµÉwhëD¬!½Î·CtcbR	YæñÓž¼C‘µhðé›{4üƒ¥ßpœ@.h¥Má#cƒ„щ¢–Í¢DHf at i5K»ÃѯñwOÆ=öBÇ¡(mU…\y´”2²	žH6Ÿ²@¸ó™SЯ˜¡§gÄ°mÊÙSAþõ¦Òy¨€¨(
-Pò”‚·„!JÃìyMÄœGcß`‘;$oó„A at eo;´ì†YY'Q¸c—IPtp“3%hýÒ|,xD„Íúˆ)zß1\z(ÉÊˉÉ4º+L˜k[M-ú%Œw(ê¿ãbÛÜSjwa‡œ¸¬¶Ø+#'&Ô.²¿¦®…þæÒPYa¬×˜¡ „Õ"„Ø ¥]þžÒ©Ãô©:0x(7•ƒd=— --èNb¡¸˜ DªcI¢6"ȘSm¯H¬Í?*ñ1ç7«ÈmC%…àñ’[rûôº¢Á¶ˆªbP´û6ÕÂ?"½ÖQÕ¥tSA˜uû õºv’-"ëIZå,¸»v_è@·Þ"yÕ$ˆå6^þ>Ðx•ÅWÊâ­¨,Úo}û
-€˜ ƒ˜OEfŠ¬ðAKv!V1Ö¦­¤AµÇ!ùµo#‹&5i¡µ4=cÁ5µ¡–ÚÑÜ”¹@}©Ž.žYN4QhŽ•µùœlsBšž´èé¶gŽ#›×^·8$W
-õ6~GgM$ž
-çÁJGn¥¯@¦ö
-»vY¡f%òÞçèÆЖ5}³‰Û?Ñ—}Ǧ&ƒoè€ Ð$sŒ†hãÓd>£x~¡‘öÓ<C£Ì‡¢[¶i…PQ¡Íž,’“‡v3N'Žc¿¼Ÿ3º!Ôùïxõ	e$·!k…T‰pbyLñ1ðK@Ø|CeŠÆÒå\J†vÉ8>_Ž"¦U™4Z4ç©.ŵº„õËdµª§Ÿ2+G´¢Î¤å.Æ4kÜ¢µ³BûúÚX_‘T4qq]LÅi„·i¨åLW58S0#”À§Bª8ùχöÿÑ’Úì
[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/adephylo -r 170

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