[Adephylo-commits] r171 - in pkg: . R inst/doc inst/doc/figs

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Tue Feb 8 13:15:54 CET 2011 

Author: jombart
Date: 2011-02-08 13:15:53 +0100 (Tue, 08 Feb 2011)
New Revision: 171

Modified:
   pkg/ChangeLog
   pkg/R/partition.R
   pkg/inst/doc/adephylo.pdf
   pkg/inst/doc/figs/adephylo-012.pdf
   pkg/inst/doc/figs/adephylo-016.pdf
   pkg/inst/doc/figs/adephylo-018.pdf
   pkg/inst/doc/figs/adephylo-aboutest.pdf
   pkg/inst/doc/figs/adephylo-figFourBas.pdf
   pkg/inst/doc/figs/adephylo-lm1.pdf
   pkg/inst/doc/figs/adephylo-loadings.pdf
   pkg/inst/doc/figs/adephylo-orthobas1.pdf
   pkg/inst/doc/figs/adephylo-pca1.pdf
   pkg/inst/doc/figs/adephylo-pca2.pdf
   pkg/inst/doc/figs/adephylo-phylo4d.pdf
   pkg/inst/doc/figs/adephylo-resid.pdf
Log:
Minor update.


Modified: pkg/ChangeLog
===================================================================
--- pkg/ChangeLog	2011-01-17 17:16:20 UTC (rev 170)
+++ pkg/ChangeLog	2011-02-08 12:15:53 UTC (rev 171)
@@ -1,3 +1,12 @@
+			CHANGES IN ADEPHYLO VERSION 1.1-1
+
+
+BUG FIXES
+
+	o fixed the citation to be used for adephylo.
+
+
+
 			CHANGES IN ADEPHYLO VERSION 1.1-0
 
 

Modified: pkg/R/partition.R
===================================================================
--- pkg/R/partition.R	2011-01-17 17:16:20 UTC (rev 170)
+++ pkg/R/partition.R	2011-02-08 12:15:53 UTC (rev 171)
@@ -64,7 +64,7 @@
     temp <- listTips(x)
     res <- data.frame(lapply(temp,fDum))
     row.names(res) <- tipLabels(x)
-    res <- res[,-1]
+    res <- res[,-1, drop=FALSE]
 
     if(result=="dummy"){
         return(res) # res is a data.frame of dummy vectors

Modified: pkg/inst/doc/adephylo.pdf
===================================================================
--- pkg/inst/doc/adephylo.pdf	2011-01-17 17:16:20 UTC (rev 170)
+++ pkg/inst/doc/adephylo.pdf	2011-02-08 12:15:53 UTC (rev 171)
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[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/adephylo -r 171

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