[Adephylo-commits] r50 - in pkg: . data man

[noreply at r-forge.r-project.org]

Author: jombart
Date: 2008-11-27 18:28:07 +0100 (Thu, 27 Nov 2008)
New Revision: 50

Added:
   pkg/data/carni19.RData
   pkg/man/carni19.Rd
Modified:
   pkg/TODO
Log:
added carni19


Modified: pkg/TODO
===================================================================
--- pkg/TODO	2008-11-27 16:15:37 UTC (rev 49)
+++ pkg/TODO	2008-11-27 17:28:07 UTC (rev 50)
@@ -45,8 +45,17 @@
 o add a orthobasis method for objects inheriting phylo4 or phylo. -- done(TJ)
 * orthogram and multivariate orthogram; use Stephane's version
 * ppca
-* migrate some (all ?) datasets from ade4 to adephylo (lizards, mjrochet, ...)
-* add a Moran's index test
+* migrate datasets from ade4 to adephylo:
+- carni19.Rd
+- carni70.Rd
+- corvus.Rd
+- lizards.Rd
+- maples.Rd
+- mjrochet.Rd
+- palm.Rd
+- procella.Rd
+- tithonia.Rd
+* add a Moran's index and a test
 
 
 

Added: pkg/data/carni19.RData
===================================================================
(Binary files differ)


Property changes on: pkg/data/carni19.RData
___________________________________________________________________
Name: svn:mime-type
   + application/octet-stream

Added: pkg/man/carni19.Rd
===================================================================
--- pkg/man/carni19.Rd	                        (rev 0)
+++ pkg/man/carni19.Rd	2008-11-27 17:28:07 UTC (rev 50)
@@ -0,0 +1,28 @@
+\name{carni19}
+\alias{carni19}
+\docType{data}
+\title{Phylogeny and quantative trait of carnivora}
+\description{
+This data set describes the phylogeny of carnivora as reported by Diniz-Filho et al. (1998). It also gives the body mass of these 19 species.
+}
+\usage{data(carni19)}
+\format{
+\code{carni19} is a list containing the 2 following objects : 
+\describe{     
+   \item{tre}{is a character string giving the phylogenetic tree in Newick format.} 
+   \item{bm}{is a numeric vector which values correspond to the body mass of the 19 species (log scale).}
+}}
+\source{
+Diniz-Filho, J. A. F., de Sant'Ana, C.E.R. and Bini, L.M. (1998) 
+An eigenvector method for estimating phylogenetic inertia. \emph{Evolution}, \bold{52}, 1247--1262.
+}
+\details{
+  This dataset replaces the former version in ade4.
+}
+\examples{
+data(carni19)
+tre <- read.tree(text=carni19$tre)
+x <- phylo4d(tre, carni19$bm)
+s.phylo4d(x, ratio=.5, center=FALSE)
+}
+\keyword{datasets}