[Adephylo-commits] r117 - / pkg/inst/doc pkg/inst/doc/figs
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Wed Dec 17 18:30:57 CET 2008
Author: jombart
Date: 2008-12-17 18:30:56 +0100 (Wed, 17 Dec 2008)
New Revision: 117
Added:
adephylo_1.0-0.tar.gz
Modified:
pkg/inst/doc/adephylo.Rnw
pkg/inst/doc/adephylo.pdf
pkg/inst/doc/figs/adephylo-012.pdf
pkg/inst/doc/figs/adephylo-phylo4d.pdf
Log:
Finished a first, working draft of the package.
Added: adephylo_1.0-0.tar.gz
===================================================================
(Binary files differ)
Property changes on: adephylo_1.0-0.tar.gz
___________________________________________________________________
Name: svn:mime-type
+ application/octet-stream
Modified: pkg/inst/doc/adephylo.Rnw
===================================================================
--- pkg/inst/doc/adephylo.Rnw 2008-12-17 17:20:24 UTC (rev 116)
+++ pkg/inst/doc/adephylo.Rnw 2008-12-17 17:30:56 UTC (rev 117)
@@ -1,7 +1,7 @@
\documentclass{article}
-%\VignettePackage{adephylo}
-% \VignetteIndexEntry{adephylo: exploratory analyses for the
-% phylogenetic comparative method}
+% \VignettePackage{adephylo}
+% \VignetteIndexEntry{adephylo: exploratory analyses for the phylogenetic comparative method}
+
\usepackage{graphicx}
\usepackage[colorlinks=true,urlcolor=blue]{hyperref}
\usepackage{array}
Modified: pkg/inst/doc/adephylo.pdf
===================================================================
--- pkg/inst/doc/adephylo.pdf 2008-12-17 17:20:24 UTC (rev 116)
+++ pkg/inst/doc/adephylo.pdf 2008-12-17 17:30:56 UTC (rev 117)
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388.45 84.54 l
@@ -1762,65 +1767,49 @@
1 J
1 j
10.00 M
-68.20 73.44 m 355.66 73.44 l S
-68.20 73.44 m 68.20 66.24 l S
-125.69 73.44 m 125.69 66.24 l S
-183.18 73.44 m 183.18 66.24 l S
-240.67 73.44 m 240.67 66.24 l S
-298.16 73.44 m 298.16 66.24 l S
-355.66 73.44 m 355.66 66.24 l S
+67.44 73.44 m 398.08 73.44 l S
+67.44 73.44 m 67.44 66.24 l S
+133.57 73.44 m 133.57 66.24 l S
+199.70 73.44 m 199.70 66.24 l S
+265.83 73.44 m 265.83 66.24 l S
+331.96 73.44 m 331.96 66.24 l S
+398.08 73.44 m 398.08 66.24 l S
BT
0.000 0.000 0.000 rg
-/F2 1 Tf 12.00 0.00 -0.00 12.00 56.35 47.52 Tm (-0.4) Tj
+/F2 1 Tf 12.00 0.00 -0.00 12.00 55.60 47.52 Tm (-0.4) Tj
ET
BT
-/F2 1 Tf 12.00 0.00 -0.00 12.00 113.85 47.52 Tm (-0.2) Tj
+/F2 1 Tf 12.00 0.00 -0.00 12.00 121.72 47.52 Tm (-0.2) Tj
ET
BT
-/F2 1 Tf 12.00 0.00 -0.00 12.00 174.84 47.52 Tm (0.0) Tj
+/F2 1 Tf 12.00 0.00 -0.00 12.00 191.36 47.52 Tm (0.0) Tj
ET
BT
-/F2 1 Tf 12.00 0.00 -0.00 12.00 232.33 47.52 Tm (0.2) Tj
+/F2 1 Tf 12.00 0.00 -0.00 12.00 257.49 47.52 Tm (0.2) Tj
ET
BT
-/F2 1 Tf 12.00 0.00 -0.00 12.00 289.82 47.52 Tm (0.4) Tj
+/F2 1 Tf 12.00 0.00 -0.00 12.00 323.62 47.52 Tm (0.4) Tj
ET
BT
-/F2 1 Tf 12.00 0.00 -0.00 12.00 347.32 47.52 Tm (0.6) Tj
+/F2 1 Tf 12.00 0.00 -0.00 12.00 389.74 47.52 Tm (0.6) Tj
ET
-59.04 84.51 m 59.04 358.70 l S
+59.04 84.51 m 59.04 303.37 l S
59.04 84.51 m 51.84 84.51 l S
-59.04 123.68 m 51.84 123.68 l S
-59.04 162.85 m 51.84 162.85 l S
-59.04 202.02 m 51.84 202.02 l S
-59.04 241.19 m 51.84 241.19 l S
-59.04 280.36 m 51.84 280.36 l S
-59.04 319.53 m 51.84 319.53 l S
-59.04 358.70 m 51.84 358.70 l S
+59.04 157.46 m 51.84 157.46 l S
+59.04 230.42 m 51.84 230.42 l S
+59.04 303.37 m 51.84 303.37 l S
BT
-/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 76.17 Tm (0.0) Tj
+/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 81.18 Tm (0) Tj
ET
BT
-/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 115.34 Tm (0.5) Tj
+/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 154.13 Tm (1) Tj
ET
BT
-/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 154.51 Tm (1.0) Tj
+/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 227.08 Tm (2) Tj
ET
BT
-/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 193.68 Tm (1.5) Tj
+/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 300.03 Tm (3) Tj
ET
-BT
-/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 232.85 Tm (2.0) Tj
-ET
-BT
-/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 272.02 Tm (2.5) Tj
-ET
-BT
-/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 311.19 Tm (3.0) Tj
-ET
-BT
-/F2 1 Tf 0.00 12.00 -12.00 0.00 41.76 350.36 Tm (3.5) Tj
-ET
59.04 73.44 m
401.76 73.44 l
401.76 372.96 l
@@ -1833,7 +1822,7 @@
/F3 1 Tf 14.00 0.00 -0.00 14.00 117.78 397.45 Tm (Moran's I Monte Carlo test for 'bif') Tj
ET
BT
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/adephylo -r 117
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