[adegenet-forum] Responder: RV: From genotypes to pollution data

Fernando Hernández fernando.hernandez33 at outlook.com
Thu Mar 5 13:19:12 CET 2020


Dear Gema,


I recommend you the use of other packages to run principal components or discriminant analyses.


If you are interested in some features of DAPC, a linear discriminant analysis probably is more suitable to you.


Saludos


---- Gema Fernández-Avilés Calderón escribió ----

Dear authors,

I was wandering If you had revived this email.
Thanks in advance,
Gema








Dear friends,
I was wandering If you had revived this email.
Thanks in advance,
Gema

[Logotipo UCLM]<http://www.uclm.es/>
Gema Fernández-Avilés Calderón
Profesora Titular de Universidad

Universidad de Castilla-La Mancha
FACULTAD CC. JURÍDICAS Y SOCIALES TO | Cobertizo San Pedro Mártir, SN | 45071 Toledo
Tfno: 925 268 800<tel:+34:925268800> | Ext: 5134<tel:+34:5134> | Gema.FAviles at uclm.es<mailto:Gema.FAviles at uclm.es>
http://www.uclm.es/profesorado/gemafaviles/ | Mensaje Instantáneo<sip:Gema.FAviles at uclm.es>




              [cid:image002.jpg at 01D5EC30.BB567B10] <http://orcid.org/0000-0001-5934-1916>
[Resultado de imagen de research gate"]<https://www.researchgate.net/profile/Gema_Fernandez-Aviles>   [Resultado de imagen de google SCHOLAR"] <https://scholar.google.es/citations?user=hpRf4eMAAAAJ&hl=es>




De: Gema Fernández-Avilés Calderón
Enviado el: martes, 25 de febrero de 2020 23:16
Para: adegenet-forum at lists.r-forge.r-project.org; jombart at biomserv.univ-lyon1.fr
Asunto: From genotypes to pollution data

Dear all,

I would like to carry out sPCA with pollution data. I mean, I have 10 Monitoring station with x,y coordinates that measure 6 pollutans every day for one year. A matrix (365x6) for 10 monitoring stations.

Can I extrapolate your idea to pollution data?
I don’t know how to run data. I don’t know how to create the object in R.

Do you have some idea? I can sent a dataset similar (I’m constructing actually this dataset)

Best and thanks,
Gema


[Logotipo UCLM]<http://www.uclm.es/>
Gema Fernández-Avilés Calderón
Profesora Titular de Universidad

Universidad de Castilla-La Mancha
FACULTAD CC. JURÍDICAS Y SOCIALES TO | Cobertizo San Pedro Mártir, SN | 45071 Toledo
Tfno: 925 268 800<tel:+34:925268800> | Ext: 5134<tel:+34:5134> | Gema.FAviles at uclm.es<mailto:Gema.FAviles at uclm.es>
http://www.uclm.es/profesorado/gemafaviles/ | Mensaje Instantáneo<sip:Gema.FAviles at uclm.es>
   [ORCID] <http://orcid.org/0000-0001-5934-1916>    [Google Scholar] <https://scholar.google.es/citations?user=hpRf4eMAAAAJ&hl=es>
[In]<https://www.linkedin.com/company/uclm>  [Twitter] <https://twitter.com/#!/uclm_es>   [Facebook] <https://www.facebook.com/uclm.es>   [YouTube] <https://www.youtube.com/user/UCLMvideos>


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image001.jpg
Type: image/jpeg
Size: 6003 bytes
Desc: image001.jpg
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0014.jpg>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image002.jpg
Type: image/jpeg
Size: 17079 bytes
Desc: image002.jpg
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0015.jpg>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image003.png
Type: image/png
Size: 354 bytes
Desc: image003.png
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0004.png>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image004.jpg
Type: image/jpeg
Size: 798 bytes
Desc: image004.jpg
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0016.jpg>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image005.jpg
Type: image/jpeg
Size: 789 bytes
Desc: image005.jpg
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0017.jpg>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image006.jpg
Type: image/jpeg
Size: 784 bytes
Desc: image006.jpg
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0018.jpg>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image007.png
Type: image/png
Size: 320 bytes
Desc: image007.png
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0005.png>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image008.jpg
Type: image/jpeg
Size: 871 bytes
Desc: image008.jpg
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0019.jpg>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image009.jpg
Type: image/jpeg
Size: 945 bytes
Desc: image009.jpg
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0020.jpg>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image001.jpg
Type: image/jpeg
Size: 6003 bytes
Desc: image001.jpg
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0021.jpg>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image002.jpg
Type: image/jpeg
Size: 17079 bytes
Desc: image002.jpg
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0022.jpg>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image003.png
Type: image/png
Size: 354 bytes
Desc: image003.png
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0006.png>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image004.jpg
Type: image/jpeg
Size: 798 bytes
Desc: image004.jpg
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0023.jpg>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image005.jpg
Type: image/jpeg
Size: 789 bytes
Desc: image005.jpg
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0024.jpg>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image006.jpg
Type: image/jpeg
Size: 784 bytes
Desc: image006.jpg
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0025.jpg>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image007.png
Type: image/png
Size: 320 bytes
Desc: image007.png
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0007.png>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image008.jpg
Type: image/jpeg
Size: 871 bytes
Desc: image008.jpg
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0026.jpg>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: image009.jpg
Type: image/jpeg
Size: 945 bytes
Desc: image009.jpg
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20200305/6ed627c9/attachment-0027.jpg>


More information about the adegenet-forum mailing list