[adegenet-forum] Spatial Data with large DNA alignement

[Thibaut Jombart]

Hello,

by the sound if it base R will make your life easier - have a look at ?rep

For instance:
> rep(c("foo", "bar"), each = 10)
 [1] "foo" "foo" "foo" "foo" "foo" "foo" "foo" "foo" "foo" "foo" "bar" "bar"
[13] "bar" "bar" "bar" "bar" "bar" "bar" "bar" "bar"
>

Cheers
Thibaut


--
Dr Thibaut Jombart
Lecturer, Department of Infectious Disease Epidemiology, Imperial College
London
Head of RECON: repidemicsconsortium.org
WHO Consultant - outbreak analysis
https://thibautjombart.netlify.com
Twitter: @TeebzR
+44(0)20 7594 3658

On 22 February 2018 at 11:27, Arsalan Emami-Khoyi <arsalane at protonmail.com>
wrote:

> Hello Thibaut,
> I hope that you are fine and all goes well.
> A rapid question :
> When I import a large alignment of DNA sequences using the different
> tools, How  can  I efficiently assign  geographical location to each
>  individuals or population.
> e.g ,
> An alignment of 1000 sequences from 10 populations each sampled for 100
> animals.
> What I do at the moment  is to make a 1000  lines text file for x and Y
> coordinates for each individuals.
> Of course each 100 rows has exactly the same coordinates.
> I guess they should be a more efficient way of doing that, am I correct ?
> heaps of thanks in advance
> Regards
>
> Arsalan Emami-Khoyi
> Postdoctoral Research Fellow in Wildlife Genomics
> University of Johannesburg_Center for Ecological Genomics and Wildlife
> Conservation
> Auckland Park 2006
> South Africa
> Email : Arsalane at uj.ac.za
> Phone :+27 (0)11 559 3373 <+27%2011%20559%203373>
> Cellphone:+27 79 88 14 628
> Website :https://sites.google.com/site/drpeterteske/postdocs
> [image: EGWC-LOGO (1).png]
>
> Sent with ProtonMail <https://protonmail.com> Secure Email.
>
>
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