[adegenet-forum] allele frequency matrix

[Thibaut Jombart]

Hi Mark,

I am afraid genlights are meant for individual genotypes indeed,
although given the varying ploidy you might be able to use gene pools
- maybe worth a try.

Best
Thibaut

--
Dr Thibaut Jombart
Lecturer, Department of Infectious Disease Epidemiology, Imperial College London
Head of RECON: repidemicsconsortium.org
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github.com/thibautjombart
Twitter: @TeebzR
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On 17 May 2017 at 16:46, Mark Coulson <Mark.Coulson.ic at uhi.ac.uk> wrote:
> Hi
>
>
>
> I have allele frequency data for pools of individuals (no individual
> genotype data) for >500,000 SNPs. I know I can do a dapc on allele
> frequencies directly but given this many SNPs should I be using a ‘genlight’
> object or is this only for individual genotypes?
>
>
>
> Thanks,
>
>
>
> Mark
>
> Inverness College UHI, a partner in the University of the Highlands and
> Islands www.inverness.uhi.ac.uk Board of Management of Inverness College
> (known as Inverness College UHI), Scottish Charity No SC021197.
>
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