[adegenet-forum] Question about the import SNP data to adegenet via read.PLINK
mbzandi at znu.ac.ir
mbzandi at znu.ac.ir
Thu Jan 12 23:25:58 CET 2017
Dear All,
I am trying to apply the Discriminant Analysis of Principal Components (DAPC ) for my SNP dataset.
Here I used the following command line to import data to adegenet R package, but I have a problem and I got the error.
I attached my data files include the PLINK.raw and map file.
> extract.PLINKmap(“phase.map”, x = NULL)
Error in factor(txt[ord, 1]) : object 'ord' not found
> x
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20170112/99a80693/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: phase-2.map
Type: application/octet-stream
Size: 65043 bytes
Desc: not available
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20170112/99a80693/attachment-0002.obj>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: phase-2.raw
Type: application/octet-stream
Size: 194377 bytes
Desc: not available
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20170112/99a80693/attachment-0003.obj>
More information about the adegenet-forum
mailing list