[adegenet-forum] adegenet and Multispati

[Roman Luštrik]

Hi Anne, 

did you have something like this in mind? 

library(ade4) 

data(mafragh) 
maf.xy <- mafragh$xy 
maf.flo <- mafragh$flo 
maf.listw <- nb2listw(neig2nb(mafragh$neig)) 

s.label(maf.xy, neig = mafragh$neig, clab = 0.75) 

maf.coa <- dudi.coa(maf.flo,scannf = FALSE) 
maf.coa.ms <- multispati(maf.coa, maf.listw, scannf = FALSE, nfposi = 2, nfnega = 2) 

library(adegenet) 
colorplot(mafragh$xy, maf.coa.ms$li, cex = 3) 

Cheers, 
Roman 

---- 
In god we trust, all others bring data. 


From: "anne DaSilva" <anne_dasilva at hotmail.com> 
To: adegenet-forum at lists.r-forge.r-project.org 
Sent: Tuesday, June 14, 2016 3:07:42 PM 
Subject: [adegenet-forum] adegenet and Multispati 

Dear all, 
I analyse spatial population structuration by the consideration of phenotypic traits with Multispati (ade4). I was wondering if it was possible (or just a dream...) to use the wonderful "colorplot" function of adegenet, but with Multispati results, to otbain a cloud of colour points on the map? 
Thanks a lot, 
All the best, 
Anne 


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