[adegenet-forum] redefining populations and excluding populations

[Thibaut Jombart]

Hi there,

most handling is documented:
adegenetTutorial("basics")

section 5.1. See also the manpage for most accessors:
?nLoc

For instance, to exclude the Salers from microbov:
x <- microbov[i=!as.character(pop(microbov)) %in% c("Salers")]

Cheers
Thibaut


--
Dr Thibaut Jombart
Lecturer, Department of Infectious Disease Epidemiology
Imperial College London
https://sites.google.com/site/thibautjombart/
https://github.com/thibautjombart
Twitter: @TeebzR <https://twitter.com/TeebzR>

On 5 August 2016 at 09:15, Mark Coulson <Mark.Coulson.ic at uhi.ac.uk> wrote:

> I have a genind file with an @pop factor however based on various cluster
> analysis I have redefined 4 groups (instead of the initial 12). I want to
> assign this grouping factor to my genind object and then eliminate one of
> the groups for subsequent analysis (presumably using the poppr package).
> How do I go about this?
>
>
> Inverness College UHI, a partner in the University of the Highlands and
> Islands www.inverness.uhi.ac.uk Board of Management of Inverness College
> (known as Inverness College UHI), Scottish Charity No SC021197.
>
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