[adegenet-forum] error in hclust
Mark.Coulson.ic at uhi.ac.uk
Fri Aug 5 11:42:48 CEST 2016
There are but this should be taken care of by NA.method and again worked just fine yesterday!
From: Thibaut Jombart [mailto:thibautjombart at gmail.com]
Sent: 05 August 2016 10:41
To: Mark Coulson <Mark.Coulson.ic at uhi.ac.uk>
Cc: adegenet-forum at lists.r-forge.r-project.org
Subject: Re: [adegenet-forum] error in hclust
Odd indeed. Are there any NAs in 'X'?
Dr Thibaut Jombart
Lecturer, Department of Infectious Disease Epidemiology
Imperial College London
On 5 August 2016 at 10:34, Mark Coulson <Mark.Coulson.ic at uhi.ac.uk<mailto:Mark.Coulson.ic at uhi.ac.uk>> wrote:
Yesterday I ran the following code and everything worked just fine. Today I simply opened up my script and re-ran it and got the following
laidon <- import2genind("laidon_project_data_no_sibs.str")
X <- tab(laidon, freq=TRUE, NA.method="mean")
D <- dist(X)
D <- as.matrix(D)
h1 <- hclust(D, method="complete")
Error in if (is.na<http://is.na>(n) || n > 65536L) stop("size cannot be NA nor exceed 65536") :
missing value where TRUE/FALSE needed
Not sure what this error means but more confused as to why suddenly it isn’t working. Nothing else has changed
Inverness College UHI, a partner in the University of the Highlands and Islands www.inverness.uhi.ac.uk<http://www.inverness.uhi.ac.uk> Board of Management of Inverness College (known as Inverness College UHI), Scottish Charity No SC021197.
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