[adegenet-forum] Sample Names in glPlot()

Luke Anderson-Trocme luke.anderson.trocme at gmail.com
Mon Nov 9 20:51:59 CET 2015


Hi Thibaut, 

Thank you for taking the time to respond to my question. 

I’ll see what I can do. If I find a way to add labels I’ll be sure to reply to this thread so others will be able to do the same. 

Thanks again, 

Luke Anderson-Trocmé
MSc Candidate
Biology Department, McGill University
luke.anderson.trocme at gmail.com

> On Nov 9, 2015, at 9:47 AM, Jombart, Thibaut <t.jombart at imperial.ac.uk> wrote:
> 
> Hi Luke, 
> 
> genlight are made for large datasets; the assumption is that there will typically be too many individuals to plot individual labels in glPlot. Patches welcome (you'll have to fork/pull request) but I am not sure I (or the rest of the team) will be able to spend time on this in the near future.
> 
> In most other plots (e.g. scatterplots) individual labels should be easier to add.
> 
> Cheers
> Thibaut
> 
> ________________________________________
> From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Luke Anderson-Trocme [luke.anderson.trocme at gmail.com]
> Sent: 30 October 2015 18:51
> To: adegenet-forum at lists.r-forge.r-project.org
> Subject: [adegenet-forum] Sample Names in glPlot()
> 
> Hi Adegenet Forum,
> 
> I have a question/comment regarding the Adegenet package.
> 
> I have been able to create a penlight object with my sequences, but am struggling to find a way to add the names of the samples to the glPlot and other similar types of plots. At the moment all I can see is the number of individuals on the y axis.
> 
> I have tried troubleshooting the problem myself but have not found a solution to my problem yet. Any help or advice is much appreciated.
> 
> Thank you for your time,
> 
> Luke Anderson-Trocmé
> MSc Candidate
> Biology Department, McGill University
> luke.anderson.trocme at gmail.com
> 
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