[adegenet-forum] glPlot: which sample is used as the reference?

Yan Hou yan.hou at nhm.uio.no
Mon Jan 12 22:26:04 CET 2015

I managed to use glPlot( SNPs,posi="topleft" ) to present the position 
of SNPs in my concatenated and aligned RAD-seq data matrix. When looking 
at the figure, I wonder which sample was used as the reference? The 
first sample in the input file or the sample with most complete sequence 
data? My first sample has a large number of missing data, so I wonder?


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