[adegenet-forum] glPlot: which sample is used as the reference?

[Yan Hou]

Hi,
I managed to use glPlot( SNPs,posi="topleft" ) to present the position 
of SNPs in my concatenated and aligned RAD-seq data matrix. When looking 
at the figure, I wonder which sample was used as the reference? The 
first sample in the input file or the sample with most complete sequence 
data? My first sample has a large number of missing data, so I wonder?

Cheers,

Yan
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