[adegenet-forum] Help : DAPC and Supplementary individuals

[Emmanuel WICKER]

Thank you Thibaut, I will test that.
Cheers
Manu

Le 25/02/2015 17:02, Jombart, Thibaut a écrit :
>
> Hi there,
>
> the variables are alleles here, not only markers. To ensure that your 
> datasets have the same alleles, use the function repool to merge the 
> two datasets, run the DAPC on the chosen subset, and then use the rest 
> as supplementary individuals.
>
> Makes sense?
>
> Cheers
> Thibaut
>
>
> ------------------------------------------------------------------------
> *From:* adegenet-forum-bounces at lists.r-forge.r-project.org 
> [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of 
> Emmanuel WICKER [emmanuel.wicker at cirad.fr]
> *Sent:* 24 February 2015 10:54
> *To:* adegenet-forum at lists.r-forge.r-project.org
> *Subject:* [adegenet-forum] Help : DAPC and Supplementary individuals
>
> Dear all,
> I first performed a DAPC on a worlwide dataset genotyped using 8 
> microsat loci. Then I tried to inject in this analysis supplementary 
> individuals , genotyped with all same 8 loci. The error message says 
> that "the number of variables does not match original data". The loci 
> are the same in both datasets, can anyone help me find what is going 
> wrong ?
> Cheers
> Manu
> -- 
> *Emmanuel WICKER*, PhD
> Phytopathologiste / Plant Pathologist
> /CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical 
> (PVBMT)/
> Pôle de Protection des Plantes
> 7, chemin de l'IRAT
> F-97410 Saint Pierre
> La Réunion, France
> wicker at cirad.fr <UrlBlockedError.aspx>
> SITE WEB PVBMT <http://umr-pvbmt.cirad.fr/>
> *Tel* : +262 (0) 262 49 92 42
> *Fax* : +262 (0) 262 49 92 93

-- 
*Emmanuel WICKER*, PhD
Phytopathologiste / Plant Pathologist
/CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical 
(PVBMT)/
Pôle de Protection des Plantes
7, chemin de l'IRAT
F-97410 Saint Pierre
La Réunion, France
wicker at cirad.fr <wicker at cirad.fr>
SITE WEB PVBMT <http://umr-pvbmt.cirad.fr/>
*Tel* : +262 (0) 262 49 92 42
*Fax* : +262 (0) 262 49 92 93
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20150226/91b681d0/attachment.html>