[adegenet-forum] read.genepop (adegenet 2.0.0)

[Chris Hollenbeck]

It's working fine now. Thanks!

Chris

On Fri, Aug 21, 2015 at 8:38 AM, Jombart, Thibaut <t.jombart at imperial.ac.uk>
wrote:

>
> Hi there,
>
> yes, this was a documented bug, fixed in the devel version. Check:
> https://github.com/thibautjombart/adegenet
>
> Cheers
> Thibaut
> ------------------------------
> *From:* adegenet-forum-bounces at lists.r-forge.r-project.org [
> adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Chris
> Hollenbeck [chollenbeck07 at tamu.edu]
> *Sent:* 21 August 2015 14:23
> *To:* adegenet-forum at lists.r-forge.r-project.org
> *Subject:* [adegenet-forum] read.genepop (adegenet 2.0.0)
>
> Hi,
>
> I've seen a similar question on another thread, but I wasn't sure if this
> exact issue has been addressed. It seems that the 'read.genepop' function
> in adegenet 2.0 no longer has the option to specify the missing data
> character string, with the result that missing data gets coded as an
> allele. Is this an intentional feature of the new package? If so, I'm not
> sure what is the best way to modify the genind object to change the missing
> data 'alleles' to NAs.
>
> Thank you in advance for your help.
>
> - Chris
>
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