[adegenet-forum] Adegenet 2.0.0 installation errors on OSX 10.8.2

[Jombart, Thibaut]

Hi Vikram,

this really belong to the 'issue' system on github:
https://github.com/thibautjombart/adegenet/issues

Can you please post there so that we can discuss which R version, platform etc?
Cheers
Thibaut


________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Vikram Chhatre [crypticlineage at gmail.com]
Sent: 18 April 2015 18:55
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] Adegenet 2.0.0 installation errors on OSX 10.8.2

I am having trouble installing adegenet devel version from github.  Transcript follows; would appreciate any feedback.

Thanks
Vikram


> devtools::install_github('thibautjombart/adegenet')
Installing github repo adegenet/master from thibautjombart
Downloading master.zip from https://github.com/thibautjombart/adegenet/archive/master.zip
Installing package from /var/folders/ds/qq5m0j2j7kq6dzp69rq4gk4c0000gn/T//RtmpRk8F3n/master.zip
arguments 'minimized' and 'invisible' are for Windows only
Installing adegenet
'/Library/Frameworks/R.framework/Resources/bin/R' --vanilla CMD INSTALL  \
  '/private/var/folders/ds/qq5m0j2j7kq6dzp69rq4gk4c0000gn/T/RtmpRk8F3n/devtools7f3b62eab846/adegenet-master'  \
  --library='/Library/Frameworks/R.framework/Versions/3.0/Resources/library' --install-tests

* installing *source* package 'adegenet' ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c GLfunctions.c -o GLfunctions.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c adesub.c -o adesub.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c monmonier-utils.c -o monmonier-utils.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c sharedAll.c -o sharedAll.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c snpbin.c -o snpbin.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o adegenet.so GLfunctions.o adesub.o monmonier-utils.o sharedAll.o snpbin.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.0/Resources/library/adegenet/libs
** R
** data
** inst
** tests
** preparing package for lazy loading
Error : object 'bind_rows' is not exported by 'namespace:dplyr'
ERROR: lazy loading failed for package 'adegenet'
* removing '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/adegenet'
* restoring previous '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/adegenet'
Error: Command failed (1)

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