[adegenet-forum] Adegenet 2.0.0 installation errors on OSX 10.8.2

Vikram Chhatre crypticlineage at gmail.com
Sat Apr 18 19:55:04 CEST 2015


I am having trouble installing adegenet devel version from github.
Transcript follows; would appreciate any feedback.

Thanks
Vikram


> devtools::install_github('thibautjombart/adegenet')
Installing github repo adegenet/master from thibautjombart
Downloading master.zip from
https://github.com/thibautjombart/adegenet/archive/master.zip
Installing package from
/var/folders/ds/qq5m0j2j7kq6dzp69rq4gk4c0000gn/T//RtmpRk8F3n/master.zip
arguments 'minimized' and 'invisible' are for Windows only
Installing adegenet
'/Library/Frameworks/R.framework/Resources/bin/R' --vanilla CMD INSTALL  \

'/private/var/folders/ds/qq5m0j2j7kq6dzp69rq4gk4c0000gn/T/RtmpRk8F3n/devtools7f3b62eab846/adegenet-master'
 \

--library='/Library/Frameworks/R.framework/Versions/3.0/Resources/library'
--install-tests

* installing *source* package 'adegenet' ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
 -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c GLfunctions.c -o
GLfunctions.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
 -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c adesub.c -o adesub.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
 -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c monmonier-utils.c
-o monmonier-utils.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
 -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c sharedAll.c -o
sharedAll.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
 -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c snpbin.c -o snpbin.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib
-Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module
-multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o adegenet.so
GLfunctions.o adesub.o monmonier-utils.o sharedAll.o snpbin.o
-F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation
installing to
/Library/Frameworks/R.framework/Versions/3.0/Resources/library/adegenet/libs
** R
** data
** inst
** tests
** preparing package for lazy loading
Error : object 'bind_rows' is not exported by 'namespace:dplyr'
ERROR: lazy loading failed for package 'adegenet'
* removing
'/Library/Frameworks/R.framework/Versions/3.0/Resources/library/adegenet'
* restoring previous
'/Library/Frameworks/R.framework/Versions/3.0/Resources/library/adegenet'
Error: Command failed (1)
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