[adegenet-forum] data input

[Vojtěch Zeisek]

Hello

Dne Pá 28. listopadu 2014 10:04:23, Mark Coulson napsal(a):
> Hello,
> 
> Apologies for the simple question but I have imported a genepop file into
> adegenet (although couldn't do this via 'read.genepop', instead had to use
> 'import2genind'. My individuals are labelled as POPNAME_1, POPNAME_2, and
> it correctly identifies both the population name as well as the individual
> identifier. However, how do I add in something to the @other slot. For
> example, I'd like to classify each of the populations as to which river
> they belong to.

Would something like
YourData$other <- YourSortingVariable
do the job?
YourSortingVariable should have length as number of individuals in YourData 
(genind object) and it should be a factor, e.g.:
YourSortingVariable <- c("Danube", "Danube", "Moldau", "Moldau", ...)
There is also slot pop (YourData$pop) which is used to store population 
information and some functions can directly use it.
HTH,
Vojtěch

-- 
Vojtěch Zeisek
http://trapa.cz/en/

Department of Botany, Faculty of Science
Charles University in Prague
Benátská 2, Prague, 12801, CZ
http://botany.natur.cuni.cz/en/

Institute of Botany, Academy of Science
Zámek 1, Průhonice, 25243, CZ
http://www.ibot.cas.cz/en/

Czech Republic
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