[adegenet-forum] convert genlight into genind

[Pauline OLIVIER]

Hello,

 i would like to convert a genlight object into a genind object.

I obtained a genlight object using "Mygenlihgt =read.PLINK("Myfile.raw")"
where Myfile.raw looks like this :

     IID      rs3934834_T  rs6687776_T  rs9651273_A rs9729550_C rs2887286_C
1 611518           0            0                      0                  
1                 0
2 611515           0            0                      1                  
1                 0
3 611514           1            0                      1                  
0                 0
4 611513           1            1                      0                  
1                 1
5 611512           0            0                      0                  
0                 1

then i try :

mydf<-do.call(rbind, lapply(Mygenlihgt at gen, as.integer))
mygenind<-df2genind(mydf)

But it does not work, i have this message :

Error in df2genind(mydf) :
  2 alleles cannot be coded by a total of 1 characters

Can you help me please.

Thank you, Pauline.