[adegenet-forum] convert genind object in data frame (A:C A:T T:G...)

[Vojtěch Zeisek]

Hello

Dne Čt 26. června 2014 15:52:20, Sara Bonanomi napsal(a):
> Dear Thibaut,
> 
> I don´t get how you could convert genepop file or a genind object into a
> dataframe, so I could get for instance a csv table with my genotypes in
> bases (e.g A:G , A:C...).

Might be I miss something, but I'd guess You convert Your data from data frame 
to genind object, right? Then I'd just pick those original data. If this is 
not Your case, check functions genind2genotype and genind2df. I don't think 
there is way how to reconstruct genind back from genpop as genpop (as far as I 
know) doesn't store all information needed to correctly assign alleles to 
original individuals.

> Thank you,
> 
> Best regards
> 
> Sara

All the best,
Vojtěch

-- 
Vojtěch Zeisek
http://trapa.cz/en/

Department of Botany, Faculty of Science
Charles University in Prague
Benátská 2, Prague, 12801, CZ
http://botany.natur.cuni.cz/en/

Institute of Botany, Academy of Science
Zámek 1, Průhonice, 25243, CZ
http://www.ibot.cas.cz/en/

Czech Republic
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