[adegenet-forum] Help: pbm conversion of a fasta alignement to Genlight

[Emmanuel WICKER]

Hi Thibaut
I already tested that, but still it doesn't work.
For that command, and also for read.snp of a DNAbin object (same error message)
Cheers
Manu

----- Mail original -----
De: "Thibaut Jombart" <t.jombart at imperial.ac.uk>
À: "Emmanuel WICKER" <emmanuel.wicker at cirad.fr>, adegenet-forum at lists.r-forge.r-project.org
Cc: wicker at cirad.fr
Envoyé: Lundi 9 Juin 2014 19:35:55
Objet: RE: [adegenet-forum] Help: pbm conversion of a fasta alignement to	Genlight


Hi

can you try  
parallel = FALSE

as argument?

Cheers
Thibaut

________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Emmanuel WICKER [emmanuel.wicker at cirad.fr]
Sent: 09 June 2014 16:23
To: adegenet-forum at lists.r-forge.r-project.org
Cc: wicker at cirad.fr
Subject: [adegenet-forum] Help: pbm conversion of a fasta alignement to Genlight

Hi all
I tried and convert a fasta alignment to a genlight object, and I had the following message:


> toto=fasta2genlight("EGL_ARB_originaux_160913_TRIM.fas")#my command

 Converting FASTA alignment into a genlight object...

Loading required package: parallel

 Looking for polymorphic positions...
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 ..........
Error in mclapply(txt, function(e) strsplit(paste(e[-1], collapse = ""),  :
  'mc.cores' > 1 is not supported on Windows

ANy help ?
I run R under Windows 7, adegenet version 1.4.2
Thank you
Manu
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