[adegenet-forum] population distances of genlight object
Gloria-Soria, Andrea
andrea.gloria-soria at yale.edu
Tue Dec 9 15:40:19 CET 2014
Hello,
I am trying to calculate the Reynold's distances between 4 populations of individuals with lots of SNPs (~150,000), I have the data as .vcf, plink, .stru files, and I have been reading them into adegenet as genlight objects (it seems that reading them as a genind object is not possible).
I also know that dist.genpop() can be used to calculate these distances when having a genpop object, but it seems that there is no command to convert a genlight to a genpop (is that true?).
Is there a way around it? or is there a way to get the Reynold's distances between the populations in any other way?
I appreciate your help,
Andrea
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